Wall clock time and date at job start Mon Mar 30 2020 04:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 115.55064 * 2 1 4 4 C 1.53000 * 117.49920 * 214.33219 * 2 1 3 5 5 C 1.53002 * 60.02940 * 252.47484 * 4 2 1 6 6 H 1.09000 * 117.49996 * 107.50493 * 5 4 2 7 7 N 1.46909 * 117.49722 * 252.51823 * 5 4 2 8 8 C 1.46891 * 110.99938 * 223.61072 * 7 5 4 9 9 C 1.53008 * 109.47092 * 180.02562 * 8 7 5 10 10 H 1.08997 * 109.46903 * 304.99922 * 9 8 7 11 11 O 1.42900 * 109.46910 * 64.99626 * 9 8 7 12 12 C 1.52997 * 109.46946 * 184.99923 * 9 8 7 13 13 N 1.46904 * 109.46935 * 179.97438 * 12 9 8 14 14 C 1.46905 * 111.00121 * 293.95923 * 13 12 9 15 15 C 1.46901 * 111.00231 * 169.99971 * 13 12 9 16 16 C 1.50696 * 109.47193 * 189.99915 * 15 13 12 17 17 H 1.08005 * 120.00201 * 0.02562 * 16 15 13 18 18 C 1.37872 * 119.99901 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00316 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 120.00039 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47138 * 89.99978 * 20 18 16 22 22 H 1.48500 * 109.47101 * 210.00162 * 20 18 16 23 23 H 1.48503 * 109.47099 * 330.00097 * 20 18 16 24 24 H 1.09001 * 109.47296 * 154.27542 * 1 2 3 25 25 H 1.09007 * 109.46973 * 274.28028 * 1 2 3 26 26 H 1.09008 * 109.47059 * 34.27409 * 1 2 3 27 27 H 1.09002 * 117.49833 * 359.97438 * 4 2 1 28 28 H 1.09002 * 117.49953 * 144.97630 * 4 2 1 29 29 H 1.00897 * 110.99263 * 99.65507 * 7 5 4 30 30 H 1.09000 * 109.47235 * 300.00125 * 8 7 5 31 31 H 1.08998 * 109.47875 * 60.00329 * 8 7 5 32 32 H 0.96698 * 113.99691 * 60.00686 * 11 9 8 33 33 H 1.08997 * 109.47319 * 299.99744 * 12 9 8 34 34 H 1.08999 * 109.47529 * 60.00198 * 12 9 8 35 35 H 1.08991 * 109.47161 * 59.99365 * 14 13 12 36 36 H 1.08999 * 109.46834 * 180.02562 * 14 13 12 37 37 H 1.09003 * 109.46714 * 299.99507 * 14 13 12 38 38 H 1.09003 * 109.47006 * 310.00385 * 15 13 12 39 39 H 1.09001 * 109.46822 * 70.00370 * 15 13 12 40 40 H 0.96995 * 120.00020 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2364 -1.1207 -0.7654 5 6 2.2375 -1.1215 0.7646 6 1 1.6131 -1.8596 1.2680 7 7 3.4982 -0.7899 1.4422 8 6 3.7481 -1.7031 2.5653 9 6 5.0663 -1.3268 3.2449 10 1 5.8669 -1.3182 2.5053 11 8 4.9462 -0.0294 3.8318 12 6 5.3892 -2.3515 4.3342 13 7 6.6551 -1.9906 4.9862 14 6 7.7815 -2.1082 4.0506 15 6 6.8804 -2.8067 6.1868 16 6 8.0483 -2.2510 6.9600 17 1 8.5708 -1.3785 6.5963 18 6 8.4493 -2.8557 8.1324 19 7 7.8128 -3.9178 8.5756 20 14 9.8967 -2.1664 9.0914 21 1 9.4090 -1.1600 10.0684 22 1 10.5806 -3.2681 9.8151 23 1 10.8511 -1.5232 8.1529 24 1 -0.3634 -0.9258 -0.4461 25 1 -0.3633 0.0767 1.0249 26 1 -0.3633 0.8493 -0.5788 27 1 1.6112 -1.8583 -1.2686 28 1 3.1711 -0.8745 -1.2692 29 1 3.5014 0.1710 1.7497 30 1 2.9334 -1.6251 3.2852 31 1 3.8091 -2.7264 2.1951 32 1 4.2512 0.0367 4.5009 33 1 4.5886 -2.3601 5.0738 34 1 5.4808 -3.3411 3.8865 35 1 7.6218 -1.4408 3.2039 36 1 8.7062 -1.8357 4.5593 37 1 7.8524 -3.1361 3.6948 38 1 5.9879 -2.7868 6.8123 39 1 7.0952 -3.8340 5.8926 40 1 8.0952 -4.3434 9.4002 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591766444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:52 Heat of formation + Delta-G solvation = -51.834215 kcal Electronic energy + Delta-G solvation = -17386.381705 eV Core-core repulsion = 14621.601268 eV Total energy + Delta-G solvation = -2764.780437 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.80354 -38.79413 -37.12005 -34.62450 -34.44454 -30.97984 -29.26316 -28.72895 -27.20969 -25.11813 -22.77096 -22.28486 -21.75658 -21.36452 -18.57744 -17.43180 -17.24515 -16.91555 -16.72226 -16.02981 -15.55533 -15.47030 -15.01546 -14.81680 -14.35066 -13.92386 -13.80772 -13.54100 -13.41097 -13.20623 -12.86184 -12.70582 -12.55483 -12.51885 -12.37949 -12.27601 -12.02550 -11.67602 -11.47693 -11.35240 -10.98498 -10.62401 -10.60592 -9.23217 -8.97399 -8.21426 -6.31336 1.40905 1.42431 1.53712 2.39821 2.82727 2.86912 3.11039 3.37264 3.68407 3.92482 3.95829 4.01800 4.12767 4.22270 4.26179 4.44218 4.47071 4.56620 4.62899 4.70261 4.73669 4.79863 4.93276 4.98004 5.05266 5.07956 5.15462 5.17043 5.19225 5.31362 5.42807 5.64246 6.03060 6.08709 6.31276 6.38528 6.62401 6.84733 6.94082 7.38486 8.89681 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.061958 B = 0.003510 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.812735 B = 7976.367254 C = 8013.960419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.161 4.161 3 H 0.103 0.897 4 C -0.167 4.167 5 C 0.007 3.993 6 H 0.101 0.899 7 N -0.663 5.663 8 C 0.042 3.958 9 C 0.128 3.872 10 H 0.094 0.906 11 O -0.560 6.560 12 C 0.025 3.975 13 N -0.539 5.539 14 C 0.041 3.959 15 C 0.207 3.793 16 C -0.524 4.524 17 H 0.061 0.939 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.265 1.265 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.089 0.911 29 H 0.349 0.651 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.380 0.620 33 H 0.069 0.931 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.011 0.989 38 H 0.005 0.995 39 H -0.039 1.039 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.181 5.848 -15.959 21.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.180 4.180 3 H 0.121 0.879 4 C -0.205 4.205 5 C -0.103 4.103 6 H 0.119 0.881 7 N -0.294 5.294 8 C -0.088 4.088 9 C 0.068 3.932 10 H 0.112 0.888 11 O -0.366 6.366 12 C -0.105 4.105 13 N -0.263 5.263 14 C -0.107 4.107 15 C 0.081 3.919 16 C -0.562 4.562 17 H 0.079 0.921 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.794 3.206 21 H -0.198 1.198 22 H -0.206 1.206 23 H -0.190 1.190 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.122 0.878 28 H 0.108 0.892 29 H 0.169 0.831 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.228 0.772 33 H 0.088 0.912 34 H 0.051 0.949 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.029 0.971 38 H 0.023 0.977 39 H -0.022 1.022 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.323 5.988 -16.504 21.450 hybrid contribution -0.237 -0.863 1.534 1.776 sum -12.560 5.125 -14.969 20.201 Atomic orbital electron populations 1.21375 0.91649 1.02646 1.02108 1.22755 0.96027 0.94541 1.04675 0.87924 1.23347 1.02166 1.01064 0.93942 1.22578 0.91797 1.01900 0.94006 0.88096 1.60106 1.32815 1.07657 1.28840 1.22528 0.96385 0.97689 0.92169 1.21769 0.96786 0.82274 0.92325 0.88846 1.86559 1.60858 1.30420 1.58737 1.22811 0.93200 0.97195 0.97260 1.61934 1.01988 1.55710 1.06644 1.22217 0.94668 0.98323 0.95541 1.19405 0.95720 0.89302 0.87508 1.21472 1.14697 1.12823 1.07213 0.92094 1.25913 1.00074 0.95206 0.98470 1.70077 1.42680 1.21897 1.22927 0.85379 0.78799 0.77931 0.78488 1.19779 1.20645 1.18966 0.92018 0.92213 0.91266 0.87802 0.89243 0.83079 0.93701 0.90048 0.77228 0.91230 0.94944 0.90674 0.92646 0.97096 0.97700 1.02152 0.92647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.44 10.19 71.98 0.73 -0.71 16 2 C -0.16 -2.46 6.21 -10.77 -0.07 -2.52 16 3 H 0.10 1.63 8.14 -2.38 -0.02 1.61 16 4 C -0.17 -2.75 10.10 30.60 0.31 -2.44 16 5 C 0.01 0.13 5.98 44.94 0.27 0.40 16 6 H 0.10 1.75 7.90 -2.39 -0.02 1.73 16 7 N -0.66 -14.10 6.75 -491.44 -3.32 -17.41 16 8 C 0.04 0.94 5.21 86.31 0.45 1.39 16 9 C 0.13 3.59 3.08 30.60 0.09 3.69 16 10 H 0.09 2.82 6.55 -2.39 -0.02 2.81 16 11 O -0.56 -16.44 12.72 -148.98 -1.90 -18.34 16 12 C 0.02 0.85 4.62 86.30 0.40 1.25 16 13 N -0.54 -23.79 4.62 -927.05 -4.28 -28.07 16 14 C 0.04 1.65 9.14 127.69 1.17 2.82 16 15 C 0.21 11.25 4.72 85.56 0.40 11.65 16 16 C -0.52 -30.37 8.46 25.60 0.22 -30.16 16 17 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 18 C 0.00 0.07 5.46 84.65 0.46 0.53 16 19 N -0.94 -56.83 13.29 21.45 0.28 -56.55 16 20 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 24 H 0.06 0.67 7.90 -2.39 -0.02 0.66 16 25 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 27 H 0.10 1.44 8.05 -2.39 -0.02 1.42 16 28 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.35 7.42 8.24 -89.70 -0.74 6.68 16 30 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.38 8.99 9.04 -74.06 -0.67 8.32 16 33 H 0.07 2.37 7.93 -2.39 -0.02 2.36 16 34 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 35 H 0.07 2.61 6.47 -2.39 -0.02 2.60 16 36 H 0.05 2.43 6.76 -2.39 -0.02 2.41 16 37 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.00 0.28 7.93 -2.39 -0.02 0.26 16 39 H -0.04 -2.30 8.12 -2.39 -0.02 -2.32 16 40 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 Total: -1.00 -65.52 326.85 -3.14 -68.66 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.40 Total: 18.86 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.44 Total: -14.11 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -7.31 Total: -102.03 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.90 Total: -18.34 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.52 -3.14 -68.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591766444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.829 kcal (2) G-P(sol) polarization free energy of solvation -65.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds