Wall clock time and date at job start Mon Mar 30 2020 04:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 115.56016 * 2 1 4 4 C 1.53002 * 117.49979 * 214.30515 * 2 1 3 5 5 C 1.52997 * 59.99955 * 252.51212 * 4 2 1 6 6 H 1.08999 * 117.50231 * 107.51581 * 5 4 2 7 7 N 1.46905 * 117.49792 * 252.51136 * 5 4 2 8 8 C 1.46901 * 110.99870 * 223.61217 * 7 5 4 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 11 11 O 1.42891 * 109.46947 * 299.99729 * 9 8 7 12 12 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 13 13 N 1.46898 * 109.46907 * 184.99598 * 12 9 8 14 14 C 1.46905 * 110.99866 * 66.05015 * 13 12 9 15 15 C 1.46899 * 111.00270 * 190.00207 * 13 12 9 16 16 C 1.50698 * 109.47400 * 170.00539 * 15 13 12 17 17 H 1.08004 * 119.99954 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00279 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99921 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00112 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46933 * 90.00189 * 20 18 16 22 22 H 1.48498 * 109.47243 * 209.99969 * 20 18 16 23 23 H 1.48499 * 109.47297 * 330.00399 * 20 18 16 24 24 H 1.09000 * 109.47185 * 274.31124 * 1 2 3 25 25 H 1.08996 * 109.47373 * 34.31545 * 1 2 3 26 26 H 1.09004 * 109.46854 * 154.31670 * 1 2 3 27 27 H 1.08998 * 117.49359 * 145.01991 * 4 2 1 28 28 H 1.08994 * 117.51598 * 359.97438 * 4 2 1 29 29 H 1.00901 * 110.99869 * 99.65928 * 7 5 4 30 30 H 1.09004 * 109.47031 * 299.99620 * 8 7 5 31 31 H 1.08995 * 109.47111 * 59.99900 * 8 7 5 32 32 H 0.96703 * 114.00376 * 300.00063 * 11 9 8 33 33 H 1.09002 * 109.47727 * 304.99917 * 12 9 8 34 34 H 1.08999 * 109.47587 * 65.00066 * 12 9 8 35 35 H 1.08997 * 109.47263 * 59.99694 * 14 13 12 36 36 H 1.09001 * 109.47102 * 179.97438 * 14 13 12 37 37 H 1.09004 * 109.46599 * 299.99738 * 14 13 12 38 38 H 1.09009 * 109.47139 * 290.00144 * 15 13 12 39 39 H 1.09000 * 109.47524 * 50.00256 * 15 13 12 40 40 H 0.97000 * 120.00143 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 1.6116 -1.8586 1.2685 7 7 3.4967 -0.7895 1.4434 8 6 3.7454 -1.7022 2.5673 9 6 5.0632 -1.3260 3.2477 10 1 5.0019 -0.3025 3.6175 11 8 6.1322 -1.4289 2.3051 12 6 5.3218 -2.2761 4.4186 13 7 6.5232 -1.8429 5.1446 14 6 6.3067 -0.5418 5.7915 15 6 6.9400 -2.8550 6.1243 16 6 8.2977 -2.4960 6.6708 17 1 8.8009 -1.6052 6.3246 18 6 8.8976 -3.3046 7.6127 19 7 8.2847 -4.3890 8.0346 20 14 10.5810 -2.8599 8.2896 21 1 10.4204 -2.0017 9.4909 22 1 11.3086 -4.1000 8.6609 23 1 11.3519 -2.1243 7.2553 24 1 -0.3633 0.0773 1.0247 25 1 -0.3634 0.8487 -0.5793 26 1 -0.3633 -0.9262 -0.4454 27 1 3.1716 -0.8752 -1.2682 28 1 1.6116 -1.8590 -1.2678 29 1 3.5002 0.1716 1.7504 30 1 2.9301 -1.6233 3.2866 31 1 3.8061 -2.7257 2.1976 32 1 6.2454 -2.3146 1.9338 33 1 4.4655 -2.2635 5.0929 34 1 5.4712 -3.2873 4.0400 35 1 5.4806 -0.6204 6.4982 36 1 7.2113 -0.2449 6.3222 37 1 6.0674 0.2050 5.0344 38 1 6.2178 -2.8903 6.9400 39 1 6.9895 -3.8304 5.6404 40 1 8.7069 -4.9581 8.6970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591766445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:56 Heat of formation + Delta-G solvation = -25.628994 kcal Electronic energy + Delta-G solvation = -17377.442296 eV Core-core repulsion = 14613.798203 eV Total energy + Delta-G solvation = -2763.644093 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -38.72056 -37.67832 -35.51888 -33.53089 -32.49216 -29.62637 -28.25258 -27.03289 -25.70069 -23.51897 -21.51340 -21.41414 -20.64321 -20.10562 -16.53929 -16.45366 -15.93754 -15.63660 -14.94414 -14.54578 -14.36420 -14.15826 -13.85381 -13.48533 -13.16259 -12.87932 -12.68086 -12.39697 -11.93076 -11.80903 -11.62625 -11.33087 -11.10126 -10.87570 -10.75578 -10.70447 -10.66350 -10.25806 -10.18260 -9.94717 -9.52536 -9.07732 -8.42505 -8.36163 -7.18207 -6.01347 -4.02256 3.33390 3.39420 3.44907 3.56481 3.76296 4.44101 4.59217 4.70862 4.71870 4.87249 5.01169 5.05834 5.17060 5.27969 5.34278 5.42781 5.46546 5.56021 5.61916 5.65947 5.72147 5.73199 5.83780 6.05568 6.06526 6.19965 6.30979 6.42233 6.76975 6.91676 7.20753 7.28552 7.33695 7.82079 8.06611 8.16453 8.22895 8.57026 9.05837 9.61946 11.09696 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.063859 B = 0.003499 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.363535 B = 7999.494273 C = 8042.647548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.170 4.170 3 H 0.105 0.895 4 C -0.165 4.165 5 C 0.020 3.980 6 H 0.097 0.903 7 N -0.648 5.648 8 C 0.028 3.972 9 C 0.116 3.884 10 H 0.092 0.908 11 O -0.536 6.536 12 C 0.025 3.975 13 N -0.529 5.529 14 C 0.036 3.964 15 C 0.192 3.808 16 C -0.505 4.505 17 H 0.064 0.936 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.898 3.102 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.272 1.272 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.342 0.658 30 H 0.037 0.963 31 H 0.076 0.924 32 H 0.369 0.631 33 H 0.026 0.974 34 H 0.071 0.929 35 H 0.008 0.992 36 H 0.075 0.925 37 H 0.046 0.954 38 H -0.011 1.011 39 H 0.029 0.971 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.355 6.513 -13.452 20.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.190 4.190 3 H 0.123 0.877 4 C -0.203 4.203 5 C -0.091 4.091 6 H 0.115 0.885 7 N -0.278 5.278 8 C -0.102 4.102 9 C 0.056 3.944 10 H 0.110 0.890 11 O -0.340 6.340 12 C -0.105 4.105 13 N -0.254 5.254 14 C -0.113 4.113 15 C 0.067 3.933 16 C -0.544 4.544 17 H 0.082 0.918 18 C -0.147 4.147 19 N -0.541 5.541 20 Si 0.726 3.274 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.197 1.197 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.074 0.926 27 H 0.117 0.883 28 H 0.110 0.890 29 H 0.162 0.838 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.215 0.785 33 H 0.044 0.956 34 H 0.089 0.911 35 H 0.026 0.974 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.007 0.993 39 H 0.047 0.953 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.472 6.685 -13.940 20.506 hybrid contribution -0.579 -0.337 1.654 1.784 sum -14.051 6.347 -12.286 19.715 Atomic orbital electron populations 1.21363 0.92931 1.01943 1.01697 1.22698 0.95093 0.95058 1.06113 0.87714 1.23299 1.02173 1.00299 0.94517 1.22519 0.92024 1.00782 0.93785 0.88542 1.60110 1.31428 1.07046 1.29258 1.22779 0.98018 0.97579 0.91788 1.21880 0.84623 0.99976 0.87949 0.89004 1.86583 1.52591 1.34992 1.59816 1.22723 0.93152 0.98758 0.95843 1.62023 1.29261 1.04040 1.30028 1.22260 1.00563 0.91866 0.96567 1.19747 0.95433 0.89899 0.88185 1.21177 1.02185 1.09328 1.21666 0.91775 1.24997 0.98069 0.95027 0.96622 1.69961 1.38495 1.14183 1.31438 0.86489 0.83957 0.77767 0.79176 1.20780 1.21264 1.19689 0.92435 0.92154 0.92550 0.88264 0.89045 0.83804 0.94514 0.90527 0.78501 0.95556 0.91085 0.97395 0.90641 0.93524 0.99342 0.95335 0.92966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.85 10.19 37.16 0.38 -0.47 16 2 C -0.17 -1.44 6.21 -90.62 -0.56 -2.00 16 3 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 4 C -0.16 -1.50 10.10 -26.73 -0.27 -1.77 16 5 C 0.02 0.19 5.98 -67.71 -0.40 -0.21 16 6 H 0.10 0.93 7.90 -51.93 -0.41 0.52 16 7 N -0.65 -7.33 6.61 -106.72 -0.71 -8.04 16 8 C 0.03 0.34 5.20 -3.82 -0.02 0.32 16 9 C 0.12 1.70 3.13 -26.73 -0.08 1.62 16 10 H 0.09 1.38 6.33 -51.93 -0.33 1.05 16 11 O -0.54 -8.73 13.15 -35.23 -0.46 -9.20 16 12 C 0.03 0.44 4.60 -3.83 -0.02 0.42 16 13 N -0.53 -11.65 4.70 -244.37 -1.15 -12.80 16 14 C 0.04 0.72 9.14 60.07 0.55 1.27 16 15 C 0.19 5.10 4.72 -4.98 -0.02 5.08 16 16 C -0.50 -14.46 8.46 -34.44 -0.29 -14.75 16 17 H 0.06 1.83 7.12 -52.48 -0.37 1.46 16 18 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 20 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 24 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 27 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.09 0.73 8.05 -51.93 -0.42 0.31 16 29 H 0.34 3.72 8.68 -39.29 -0.34 3.38 16 30 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.37 5.06 9.05 45.56 0.41 5.48 16 33 H 0.03 0.45 8.12 -51.93 -0.42 0.03 16 34 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 35 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 36 H 0.07 1.63 6.76 -51.93 -0.35 1.27 16 37 H 0.05 0.81 6.37 -51.93 -0.33 0.48 16 38 H -0.01 -0.32 8.12 -51.92 -0.42 -0.74 16 39 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 327.36 15.07 4.93 4.93 Total: -1.00 -31.18 327.36 -8.83 -40.00 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.31 Total: 3.56 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -0.84 Total: -9.06 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -1.12 Total: -47.16 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.46 Total: -9.20 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.18 -8.83 -40.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591766445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.375 kcal (2) G-P(sol) polarization free energy of solvation -31.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds