Wall clock time and date at job start Mon Mar 30 2020 04:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 115.56016 * 2 1 4 4 C 1.53002 * 117.49979 * 214.30515 * 2 1 3 5 5 C 1.52997 * 59.99955 * 252.51212 * 4 2 1 6 6 H 1.08999 * 117.50231 * 107.51581 * 5 4 2 7 7 N 1.46905 * 117.49792 * 252.51136 * 5 4 2 8 8 C 1.46901 * 110.99870 * 223.61217 * 7 5 4 9 9 C 1.53004 * 109.46916 * 180.02562 * 8 7 5 10 10 H 1.08996 * 109.46939 * 60.00272 * 9 8 7 11 11 O 1.42891 * 109.46947 * 299.99729 * 9 8 7 12 12 C 1.52996 * 109.46700 * 179.97438 * 9 8 7 13 13 N 1.46898 * 109.46907 * 184.99598 * 12 9 8 14 14 C 1.46905 * 110.99866 * 66.05015 * 13 12 9 15 15 C 1.46899 * 111.00270 * 190.00207 * 13 12 9 16 16 C 1.50698 * 109.47400 * 170.00539 * 15 13 12 17 17 H 1.08004 * 119.99954 * 359.97438 * 16 15 13 18 18 C 1.37875 * 120.00279 * 179.97438 * 16 15 13 19 19 N 1.31516 * 119.99921 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00112 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46933 * 90.00189 * 20 18 16 22 22 H 1.48498 * 109.47243 * 209.99969 * 20 18 16 23 23 H 1.48499 * 109.47297 * 330.00399 * 20 18 16 24 24 H 1.09000 * 109.47185 * 274.31124 * 1 2 3 25 25 H 1.08996 * 109.47373 * 34.31545 * 1 2 3 26 26 H 1.09004 * 109.46854 * 154.31670 * 1 2 3 27 27 H 1.08998 * 117.49359 * 145.01991 * 4 2 1 28 28 H 1.08994 * 117.51598 * 359.97438 * 4 2 1 29 29 H 1.00901 * 110.99869 * 99.65928 * 7 5 4 30 30 H 1.09004 * 109.47031 * 299.99620 * 8 7 5 31 31 H 1.08995 * 109.47111 * 59.99900 * 8 7 5 32 32 H 0.96703 * 114.00376 * 300.00063 * 11 9 8 33 33 H 1.09002 * 109.47727 * 304.99917 * 12 9 8 34 34 H 1.08999 * 109.47587 * 65.00066 * 12 9 8 35 35 H 1.08997 * 109.47263 * 59.99694 * 14 13 12 36 36 H 1.09001 * 109.47102 * 179.97438 * 14 13 12 37 37 H 1.09004 * 109.46599 * 299.99738 * 14 13 12 38 38 H 1.09009 * 109.47139 * 290.00144 * 15 13 12 39 39 H 1.09000 * 109.47524 * 50.00256 * 15 13 12 40 40 H 0.97000 * 120.00143 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1211 -0.7649 5 6 2.2364 -1.1209 0.7651 6 1 1.6116 -1.8586 1.2685 7 7 3.4967 -0.7895 1.4434 8 6 3.7454 -1.7022 2.5673 9 6 5.0632 -1.3260 3.2477 10 1 5.0019 -0.3025 3.6175 11 8 6.1322 -1.4289 2.3051 12 6 5.3218 -2.2761 4.4186 13 7 6.5232 -1.8429 5.1446 14 6 6.3067 -0.5418 5.7915 15 6 6.9400 -2.8550 6.1243 16 6 8.2977 -2.4960 6.6708 17 1 8.8009 -1.6052 6.3246 18 6 8.8976 -3.3046 7.6127 19 7 8.2847 -4.3890 8.0346 20 14 10.5810 -2.8599 8.2896 21 1 10.4204 -2.0017 9.4909 22 1 11.3086 -4.1000 8.6609 23 1 11.3519 -2.1243 7.2553 24 1 -0.3633 0.0773 1.0247 25 1 -0.3634 0.8487 -0.5793 26 1 -0.3633 -0.9262 -0.4454 27 1 3.1716 -0.8752 -1.2682 28 1 1.6116 -1.8590 -1.2678 29 1 3.5002 0.1716 1.7504 30 1 2.9301 -1.6233 3.2866 31 1 3.8061 -2.7257 2.1976 32 1 6.2454 -2.3146 1.9338 33 1 4.4655 -2.2635 5.0929 34 1 5.4712 -3.2873 4.0400 35 1 5.4806 -0.6204 6.4982 36 1 7.2113 -0.2449 6.3222 37 1 6.0674 0.2050 5.0344 38 1 6.2178 -2.8903 6.9400 39 1 6.9895 -3.8304 5.6404 40 1 8.7069 -4.9581 8.6970 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591766445.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:01:55 Heat of formation + Delta-G solvation = -50.090666 kcal Electronic energy + Delta-G solvation = -17378.503034 eV Core-core repulsion = 14613.798203 eV Total energy + Delta-G solvation = -2764.704831 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.75810 -38.79579 -37.07363 -34.62207 -34.47779 -30.93223 -29.26003 -28.72242 -27.20831 -25.12392 -22.80445 -22.30003 -21.76127 -21.33242 -18.57445 -17.49840 -17.15506 -16.94035 -16.53973 -15.99982 -15.66821 -15.40097 -15.11574 -14.75540 -14.36350 -13.87376 -13.83666 -13.66222 -13.26463 -13.19688 -12.84747 -12.66314 -12.59959 -12.54492 -12.40009 -12.26957 -11.99734 -11.64449 -11.49400 -11.34596 -10.92911 -10.62727 -10.56702 -9.19369 -8.96535 -8.21492 -6.31443 1.40619 1.42197 1.54302 2.39853 2.82626 2.86746 3.10951 3.39160 3.71186 3.91751 3.93840 4.02268 4.12183 4.20600 4.33691 4.43790 4.49720 4.50461 4.63458 4.70093 4.72583 4.76907 4.92871 4.98427 5.05435 5.10716 5.14108 5.16669 5.18945 5.30452 5.43063 5.64135 6.03245 6.08974 6.31136 6.36977 6.63051 6.84678 7.02336 7.38367 8.89609 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.063859 B = 0.003499 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.363535 B = 7999.494273 C = 8042.647548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.160 4.160 3 H 0.103 0.897 4 C -0.167 4.167 5 C 0.008 3.992 6 H 0.101 0.899 7 N -0.657 5.657 8 C 0.041 3.959 9 C 0.129 3.871 10 H 0.092 0.908 11 O -0.554 6.554 12 C 0.025 3.975 13 N -0.541 5.541 14 C 0.039 3.961 15 C 0.207 3.793 16 C -0.524 4.524 17 H 0.061 0.939 18 C 0.001 3.999 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.266 1.266 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.344 0.656 30 H 0.047 0.953 31 H 0.079 0.921 32 H 0.378 0.622 33 H 0.033 0.967 34 H 0.068 0.932 35 H 0.012 0.988 36 H 0.055 0.945 37 H 0.076 0.924 38 H -0.039 1.039 39 H 0.004 0.996 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.770 7.463 -14.126 21.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.180 4.180 3 H 0.122 0.878 4 C -0.205 4.205 5 C -0.102 4.102 6 H 0.118 0.882 7 N -0.287 5.287 8 C -0.089 4.089 9 C 0.069 3.931 10 H 0.110 0.890 11 O -0.360 6.360 12 C -0.104 4.104 13 N -0.265 5.265 14 C -0.109 4.109 15 C 0.081 3.919 16 C -0.562 4.562 17 H 0.079 0.921 18 C -0.197 4.197 19 N -0.576 5.576 20 Si 0.794 3.206 21 H -0.197 1.197 22 H -0.206 1.206 23 H -0.191 1.191 24 H 0.078 0.922 25 H 0.087 0.913 26 H 0.079 0.921 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.164 0.836 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.226 0.774 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.030 0.970 36 H 0.074 0.926 37 H 0.095 0.905 38 H -0.021 1.021 39 H 0.022 0.978 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.906 7.645 -14.636 21.588 hybrid contribution -0.504 -0.631 1.811 1.983 sum -14.410 7.014 -12.825 20.526 Atomic orbital electron populations 1.21375 0.91680 1.02634 1.02094 1.22747 0.95990 0.94562 1.04675 0.87846 1.23329 1.02111 1.01046 0.94023 1.22566 0.91753 1.01881 0.94001 0.88168 1.60072 1.32667 1.07048 1.28946 1.22558 0.96473 0.97778 0.92086 1.21746 0.85700 0.98947 0.86730 0.89046 1.86545 1.53409 1.36001 1.60009 1.22827 0.91529 0.99563 0.96518 1.61932 1.32075 1.03708 1.28821 1.22242 0.99754 0.91483 0.97399 1.19398 0.94353 0.90139 0.88003 1.21475 1.03191 1.09379 1.22193 0.92098 1.25918 1.02204 0.94774 0.96784 1.70079 1.40337 1.15176 1.31987 0.85376 0.78819 0.77754 0.78643 1.19711 1.20589 1.19053 0.92204 0.91267 0.92068 0.89324 0.87894 0.83612 0.93530 0.90289 0.77397 0.94891 0.91368 0.96975 0.92614 0.90501 1.02087 0.97806 0.92643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.42 10.19 71.98 0.73 -0.68 16 2 C -0.16 -2.42 6.21 -10.79 -0.07 -2.48 16 3 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.17 -2.77 10.10 30.59 0.31 -2.46 16 5 C 0.01 0.15 5.98 44.91 0.27 0.42 16 6 H 0.10 1.72 7.90 -2.39 -0.02 1.70 16 7 N -0.66 -13.77 6.61 -491.56 -3.25 -17.02 16 8 C 0.04 0.90 5.20 86.30 0.45 1.35 16 9 C 0.13 3.59 3.13 30.59 0.10 3.69 16 10 H 0.09 2.57 6.33 -2.39 -0.02 2.55 16 11 O -0.55 -17.42 13.15 -148.98 -1.96 -19.38 16 12 C 0.02 0.86 4.60 86.30 0.40 1.26 16 13 N -0.54 -23.89 4.70 -927.04 -4.36 -28.25 16 14 C 0.04 1.56 9.14 127.69 1.17 2.73 16 15 C 0.21 11.29 4.72 85.56 0.40 11.69 16 16 C -0.52 -30.45 8.46 25.60 0.22 -30.23 16 17 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 18 C 0.00 0.06 5.46 84.65 0.46 0.52 16 19 N -0.94 -56.91 13.29 21.45 0.28 -56.62 16 20 Si 0.97 44.98 29.54 68.60 2.03 47.01 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.67 7.90 -2.39 -0.02 0.65 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.10 1.45 8.05 -2.39 -0.02 1.43 16 29 H 0.34 6.90 8.68 -89.69 -0.78 6.12 16 30 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.38 10.07 9.05 -74.06 -0.67 9.40 16 33 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.07 2.37 7.93 -2.39 -0.02 2.35 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.05 2.40 6.76 -2.39 -0.02 2.38 16 37 H 0.08 2.55 6.37 -2.38 -0.02 2.53 16 38 H -0.04 -2.26 8.12 -2.38 -0.02 -2.28 16 39 H 0.00 0.22 7.93 -2.39 -0.02 0.20 16 40 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -66.29 327.36 -3.26 -69.55 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -0.44 Total: 18.93 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: 4.44 Total: -14.21 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -7.32 Total: -101.90 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -1.96 Total: -19.38 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -66.29 -3.26 -69.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591766445.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.461 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds