Wall clock time and date at job start Mon Mar 30 2020 04:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49050 * 2 1 4 4 C 1.53052 * 109.48231 * 239.95861 * 2 1 3 5 5 N 1.46961 * 109.36116 * 181.63198 * 4 2 1 6 6 C 1.46899 * 111.00115 * 183.18471 * 5 4 2 7 7 C 1.53001 * 109.46781 * 75.70853 * 6 5 4 8 8 O 1.42901 * 109.47451 * 64.65086 * 7 6 5 9 9 C 1.46967 * 110.87887 * 59.31998 * 5 4 2 10 10 C 1.53046 * 109.36474 * 300.67794 * 9 5 4 11 11 N 1.46958 * 109.48781 * 120.07000 * 2 1 3 12 12 C 1.46899 * 110.99687 * 303.14989 * 11 2 1 13 13 C 1.53005 * 109.47032 * 170.00294 * 12 11 2 14 14 C 1.50693 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99742 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99832 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00079 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47452 * 89.99922 * 18 16 14 20 20 H 1.48508 * 109.47073 * 210.00142 * 18 16 14 21 21 H 1.48499 * 109.47289 * 329.99699 * 18 16 14 22 22 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46967 * 300.04431 * 1 2 3 24 24 H 1.08997 * 109.47276 * 60.03861 * 1 2 3 25 25 H 1.08992 * 109.49631 * 61.66805 * 4 2 1 26 26 H 1.09000 * 109.50750 * 301.60297 * 4 2 1 27 27 H 1.09003 * 109.47445 * 195.70567 * 6 5 4 28 28 H 1.09003 * 109.47525 * 315.70833 * 6 5 4 29 29 H 1.08998 * 109.46726 * 184.65003 * 7 6 5 30 30 H 1.09002 * 109.47004 * 304.64617 * 7 6 5 31 31 H 0.96695 * 114.00300 * 179.97438 * 8 7 6 32 32 H 1.08996 * 109.48702 * 60.64674 * 9 5 4 33 33 H 1.09001 * 109.48576 * 180.71576 * 9 5 4 34 34 H 1.08999 * 109.49047 * 298.43961 * 10 9 5 35 35 H 1.08995 * 109.51021 * 178.37835 * 10 9 5 36 36 H 1.08997 * 109.47408 * 289.99914 * 12 11 2 37 37 H 1.09001 * 109.46970 * 50.00540 * 12 11 2 38 38 H 1.09006 * 109.46880 * 300.00192 * 13 12 11 39 39 H 1.08996 * 109.47037 * 59.99554 * 13 12 11 40 40 H 0.97005 * 120.00194 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2491 5 7 3.5096 -0.7551 -1.2268 6 6 4.0410 -1.3748 -2.4480 7 6 3.9309 -0.3864 -3.6108 8 8 4.7681 0.7434 -3.3566 9 6 3.9999 -1.4492 -0.0277 10 6 3.4894 -0.7269 1.2212 11 7 2.0203 -0.6942 1.1989 12 6 1.4889 -0.0745 2.4202 13 6 1.8117 -0.9617 3.6243 14 6 1.2660 -0.3263 4.8770 15 1 0.7418 0.6163 4.8203 16 6 1.4369 -0.9478 6.0959 17 7 0.9611 -0.3930 7.1893 18 14 2.3441 -2.5777 6.1942 19 1 3.7932 -2.3261 6.3993 20 1 1.8137 -3.3717 7.3315 21 1 2.1466 -3.3312 4.9299 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5145 0.8896 24 1 -0.3634 0.5132 -0.8903 25 1 1.7021 -0.1926 -2.1394 26 1 1.6543 -1.7415 -1.2635 27 1 5.0869 -1.6407 -2.2951 28 1 3.4678 -2.2727 -2.6789 29 1 4.2480 -0.8736 -4.5328 30 1 2.8966 -0.0571 -3.7110 31 1 4.7485 1.4124 -4.0544 32 1 3.6359 -2.4766 -0.0280 33 1 5.0899 -1.4492 -0.0278 34 1 3.8756 0.2923 1.2353 35 1 3.8278 -1.2563 2.1118 36 1 1.9452 0.9057 2.5585 37 1 0.4084 0.0372 2.3304 38 1 1.3553 -1.9419 3.4860 39 1 2.8922 -1.0734 3.7140 40 1 1.0816 -0.8301 8.0469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595522854.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:12 Heat of formation + Delta-G solvation = -40.352047 kcal Electronic energy + Delta-G solvation = -18260.524600 eV Core-core repulsion = 15496.242068 eV Total energy + Delta-G solvation = -2764.282533 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.43514 -37.18453 -35.40579 -33.14588 -32.17688 -30.78693 -28.91794 -27.05177 -25.86606 -23.61396 -22.15410 -21.26619 -20.12217 -19.31872 -17.61055 -16.85632 -16.10632 -15.50043 -15.03374 -14.53307 -14.39227 -14.28501 -13.86377 -13.50595 -13.35283 -12.87552 -12.59062 -12.38186 -11.97802 -11.94412 -11.65623 -11.42367 -11.29799 -10.99362 -10.81596 -10.67690 -10.36574 -10.10503 -9.84116 -9.71648 -9.60143 -9.15078 -8.49216 -8.27488 -7.76241 -6.01219 -3.98907 3.34218 3.41494 3.47672 3.83664 4.13287 4.34006 4.49260 4.88765 4.92845 5.10362 5.13519 5.25957 5.32446 5.35141 5.42288 5.52875 5.58976 5.62541 5.68467 5.77421 5.83081 6.02782 6.07405 6.22897 6.26431 6.31643 6.38337 6.51704 6.85646 7.02948 7.09153 7.24086 7.37502 7.53256 7.67048 7.70757 7.90086 8.57014 9.03269 9.61613 11.12265 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038056 B = 0.005134 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.581979 B = 5452.917915 C = 5833.420191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.083 3.917 3 H 0.044 0.956 4 C 0.064 3.936 5 N -0.532 5.532 6 C 0.053 3.947 7 C 0.083 3.917 8 O -0.558 6.558 9 C 0.060 3.940 10 C 0.056 3.944 11 N -0.539 5.539 12 C 0.067 3.933 13 C -0.006 4.006 14 C -0.520 4.520 15 H 0.070 0.930 16 C 0.067 3.933 17 N -0.905 5.905 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.263 1.263 22 H 0.061 0.939 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.372 0.628 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.038 0.962 35 H 0.086 0.914 36 H 0.025 0.975 37 H 0.073 0.927 38 H 0.023 0.977 39 H 0.010 0.990 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.605 -1.503 -21.996 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 H 0.062 0.938 4 C -0.064 4.064 5 N -0.256 5.256 6 C -0.075 4.075 7 C 0.005 3.995 8 O -0.362 6.362 9 C -0.068 4.068 10 C -0.072 4.072 11 N -0.265 5.265 12 C -0.060 4.060 13 C -0.044 4.044 14 C -0.558 4.558 15 H 0.088 0.912 16 C -0.133 4.133 17 N -0.544 5.544 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.188 1.188 22 H 0.081 0.919 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.089 0.911 26 H 0.057 0.943 27 H 0.097 0.903 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.217 0.783 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.104 0.896 36 H 0.043 0.957 37 H 0.091 0.909 38 H 0.041 0.959 39 H 0.028 0.972 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.716 -1.874 -21.252 21.849 hybrid contribution 0.322 -0.535 -0.304 0.695 sum 5.038 -2.410 -21.556 22.268 Atomic orbital electron populations 1.21886 0.94306 1.02531 1.01748 1.21570 0.95023 0.95931 0.90107 0.93814 1.22237 0.87049 0.99383 0.97733 1.62088 1.08403 1.53604 1.01543 1.22121 1.00900 0.94298 0.90172 1.22165 0.93660 0.87580 0.96108 1.86624 1.68043 1.32497 1.49040 1.22202 0.99273 0.95885 0.89465 1.22147 0.88327 0.99578 0.97158 1.62300 1.07662 1.53995 1.02506 1.22206 0.99487 0.96034 0.88257 1.19563 0.96137 0.96039 0.92670 1.21096 1.36404 1.08267 0.90061 0.91154 1.24990 0.95257 0.97475 0.95624 1.69919 1.46532 1.39479 0.98469 0.86773 0.80137 0.84498 0.77900 1.20370 1.21465 1.18794 0.91949 0.91491 0.92787 0.91077 0.94255 0.90289 0.93363 0.93806 0.93795 0.78288 0.94253 0.90675 0.94328 0.89609 0.95650 0.90864 0.95851 0.97175 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.89 37.16 0.33 -1.68 16 2 C 0.08 1.27 2.56 -67.65 -0.17 1.09 16 3 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 4 C 0.06 0.85 4.72 -3.76 -0.02 0.83 16 5 N -0.53 -7.19 4.58 -234.46 -1.07 -8.27 16 6 C 0.05 0.57 5.39 -3.82 -0.02 0.55 16 7 C 0.08 0.76 7.23 37.16 0.27 1.03 16 8 O -0.56 -5.95 13.60 -35.23 -0.48 -6.43 16 9 C 0.06 0.85 5.57 -3.76 -0.02 0.83 16 10 C 0.06 0.96 5.41 -3.77 -0.02 0.94 16 11 N -0.54 -9.73 4.53 -226.49 -1.03 -10.76 16 12 C 0.07 1.40 4.66 -3.82 -0.02 1.38 16 13 C -0.01 -0.16 3.97 -27.88 -0.11 -0.27 16 14 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 15 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 16 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 18 Si 0.88 22.17 27.47 -169.99 -4.67 17.50 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 21 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.07 0.99 6.15 -51.93 -0.32 0.67 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.82 6.72 -51.93 -0.35 0.47 16 26 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 28 H 0.05 0.46 8.00 -51.93 -0.42 0.05 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.38 6.74 -51.93 -0.35 0.03 16 31 H 0.37 2.20 9.12 45.56 0.42 2.62 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.98 8.00 -51.93 -0.42 0.56 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.54 6.34 -51.93 -0.33 1.21 16 36 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 37 H 0.07 1.52 5.73 -51.93 -0.30 1.22 16 38 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 39 H 0.01 0.25 5.92 -51.93 -0.31 -0.06 16 40 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 307.60 15.07 4.64 4.64 Total: -1.00 -32.84 307.60 -8.17 -41.01 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -6.12 Total: -1.35 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.21 Total: -8.82 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -1.33 Total: -46.55 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.48 Total: -6.43 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.67 Total: 17.50 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.84 -8.17 -41.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595522854.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.659 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds