Wall clock time and date at job start Mon Mar 30 2020 04:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49050 * 2 1 4 4 C 1.53052 * 109.48231 * 239.95861 * 2 1 3 5 5 N 1.46961 * 109.36116 * 181.63198 * 4 2 1 6 6 C 1.46899 * 111.00115 * 183.18471 * 5 4 2 7 7 C 1.53001 * 109.46781 * 75.70853 * 6 5 4 8 8 O 1.42901 * 109.47451 * 64.65086 * 7 6 5 9 9 C 1.46967 * 110.87887 * 59.31998 * 5 4 2 10 10 C 1.53046 * 109.36474 * 300.67794 * 9 5 4 11 11 N 1.46958 * 109.48781 * 120.07000 * 2 1 3 12 12 C 1.46899 * 110.99687 * 303.14989 * 11 2 1 13 13 C 1.53005 * 109.47032 * 170.00294 * 12 11 2 14 14 C 1.50693 * 109.47159 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00296 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99742 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99832 * 179.97438 * 16 14 13 18 18 Si 1.86795 * 120.00079 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47452 * 89.99922 * 18 16 14 20 20 H 1.48508 * 109.47073 * 210.00142 * 18 16 14 21 21 H 1.48499 * 109.47289 * 329.99699 * 18 16 14 22 22 H 1.09001 * 109.47204 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46967 * 300.04431 * 1 2 3 24 24 H 1.08997 * 109.47276 * 60.03861 * 1 2 3 25 25 H 1.08992 * 109.49631 * 61.66805 * 4 2 1 26 26 H 1.09000 * 109.50750 * 301.60297 * 4 2 1 27 27 H 1.09003 * 109.47445 * 195.70567 * 6 5 4 28 28 H 1.09003 * 109.47525 * 315.70833 * 6 5 4 29 29 H 1.08998 * 109.46726 * 184.65003 * 7 6 5 30 30 H 1.09002 * 109.47004 * 304.64617 * 7 6 5 31 31 H 0.96695 * 114.00300 * 179.97438 * 8 7 6 32 32 H 1.08996 * 109.48702 * 60.64674 * 9 5 4 33 33 H 1.09001 * 109.48576 * 180.71576 * 9 5 4 34 34 H 1.08999 * 109.49047 * 298.43961 * 10 9 5 35 35 H 1.08995 * 109.51021 * 178.37835 * 10 9 5 36 36 H 1.08997 * 109.47408 * 289.99914 * 12 11 2 37 37 H 1.09001 * 109.46970 * 50.00540 * 12 11 2 38 38 H 1.09006 * 109.46880 * 300.00192 * 13 12 11 39 39 H 1.08996 * 109.47037 * 59.99554 * 13 12 11 40 40 H 0.97005 * 120.00194 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7223 -1.2491 5 7 3.5096 -0.7551 -1.2268 6 6 4.0410 -1.3748 -2.4480 7 6 3.9309 -0.3864 -3.6108 8 8 4.7681 0.7434 -3.3566 9 6 3.9999 -1.4492 -0.0277 10 6 3.4894 -0.7269 1.2212 11 7 2.0203 -0.6942 1.1989 12 6 1.4889 -0.0745 2.4202 13 6 1.8117 -0.9617 3.6243 14 6 1.2660 -0.3263 4.8770 15 1 0.7418 0.6163 4.8203 16 6 1.4369 -0.9478 6.0959 17 7 0.9611 -0.3930 7.1893 18 14 2.3441 -2.5777 6.1942 19 1 3.7932 -2.3261 6.3993 20 1 1.8137 -3.3717 7.3315 21 1 2.1466 -3.3312 4.9299 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3633 0.5145 0.8896 24 1 -0.3634 0.5132 -0.8903 25 1 1.7021 -0.1926 -2.1394 26 1 1.6543 -1.7415 -1.2635 27 1 5.0869 -1.6407 -2.2951 28 1 3.4678 -2.2727 -2.6789 29 1 4.2480 -0.8736 -4.5328 30 1 2.8966 -0.0571 -3.7110 31 1 4.7485 1.4124 -4.0544 32 1 3.6359 -2.4766 -0.0280 33 1 5.0899 -1.4492 -0.0278 34 1 3.8756 0.2923 1.2353 35 1 3.8278 -1.2563 2.1118 36 1 1.9452 0.9057 2.5585 37 1 0.4084 0.0372 2.3304 38 1 1.3553 -1.9419 3.4860 39 1 2.8922 -1.0734 3.7140 40 1 1.0816 -0.8301 8.0469 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595522854.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:12 Heat of formation + Delta-G solvation = -67.386986 kcal Electronic energy + Delta-G solvation = -18261.696923 eV Core-core repulsion = 15496.242068 eV Total energy + Delta-G solvation = -2765.454856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.62672 -38.10683 -36.55685 -35.08866 -33.60369 -32.35488 -30.22835 -28.20344 -27.23474 -25.29447 -23.25629 -22.42837 -21.72968 -20.62431 -19.00565 -18.31677 -17.18032 -16.81156 -16.27129 -16.18583 -15.67080 -15.49037 -15.28167 -14.80880 -14.61733 -14.52942 -13.90647 -13.61380 -13.48373 -13.07929 -12.90854 -12.80485 -12.70909 -12.42353 -12.06479 -12.00022 -11.81626 -11.76568 -11.50554 -11.25092 -11.19374 -10.77758 -10.74918 -9.33524 -9.17969 -8.30570 -6.34743 1.35168 1.37294 1.50568 2.35997 2.87245 2.96032 3.05003 3.50599 3.83930 4.01254 4.02855 4.23265 4.30205 4.34728 4.40119 4.43230 4.49240 4.58352 4.62307 4.73940 4.75582 4.79249 4.82179 4.92964 4.94336 4.99098 5.02317 5.11074 5.31368 5.36253 5.46194 5.62559 6.02289 6.03600 6.21044 6.27648 6.32030 6.72589 7.04455 7.29996 8.86266 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038056 B = 0.005134 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.581979 B = 5452.917915 C = 5833.420191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.079 3.921 3 H 0.030 0.970 4 C 0.072 3.928 5 N -0.546 5.546 6 C 0.050 3.950 7 C 0.084 3.916 8 O -0.586 6.586 9 C 0.068 3.932 10 C 0.054 3.946 11 N -0.541 5.541 12 C 0.079 3.921 13 C 0.003 3.997 14 C -0.533 4.533 15 H 0.031 0.969 16 C 0.008 3.992 17 N -0.950 5.950 18 Si 0.951 3.049 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.249 1.249 22 H 0.062 0.938 23 H 0.048 0.952 24 H 0.083 0.917 25 H 0.094 0.906 26 H 0.041 0.959 27 H 0.077 0.923 28 H 0.063 0.937 29 H 0.070 0.930 30 H 0.049 0.951 31 H 0.390 0.610 32 H 0.041 0.959 33 H 0.087 0.913 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.010 0.990 37 H 0.072 0.928 38 H 0.021 0.979 39 H 0.015 0.985 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 -3.094 -24.443 25.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.029 4.029 3 H 0.048 0.952 4 C -0.056 4.056 5 N -0.271 5.271 6 C -0.078 4.078 7 C 0.006 3.994 8 O -0.393 6.393 9 C -0.060 4.060 10 C -0.074 4.074 11 N -0.267 5.267 12 C -0.048 4.048 13 C -0.035 4.035 14 C -0.572 4.572 15 H 0.050 0.950 16 C -0.189 4.189 17 N -0.591 5.591 18 Si 0.774 3.226 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.173 1.173 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.102 0.898 25 H 0.112 0.888 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.238 0.762 32 H 0.059 0.941 33 H 0.105 0.895 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.028 0.972 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.033 0.967 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.533 -3.451 -23.743 24.622 hybrid contribution 0.038 0.074 0.426 0.434 sum 5.571 -3.377 -23.316 24.209 Atomic orbital electron populations 1.21852 0.93121 1.02684 1.02329 1.21714 0.96047 0.95266 0.89882 0.95210 1.22181 0.87031 0.99336 0.97063 1.62093 1.08548 1.54228 1.02258 1.22252 1.00847 0.95310 0.89382 1.22226 0.93872 0.87090 0.96257 1.86564 1.68528 1.33588 1.50670 1.22084 0.99894 0.95375 0.88653 1.22171 0.87684 0.99088 0.98461 1.62282 1.08336 1.53864 1.02181 1.21898 0.99515 0.94631 0.88780 1.19413 0.95912 0.95999 0.92165 1.21405 1.36200 1.07230 0.92342 0.95033 1.25958 0.96157 1.01747 0.95019 1.70064 1.48145 1.41585 0.99295 0.85643 0.79010 0.79326 0.78590 1.19124 1.20725 1.17253 0.91921 0.93322 0.89827 0.88821 0.94105 0.90452 0.91869 0.91243 0.93263 0.76171 0.94120 0.89450 0.95631 0.90854 0.97195 0.90960 0.96040 0.96682 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.69 8.89 71.98 0.64 -3.05 16 2 C 0.08 2.33 2.56 44.92 0.12 2.45 16 3 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 4 C 0.07 1.70 4.72 86.31 0.41 2.11 16 5 N -0.55 -13.48 4.58 -895.69 -4.11 -17.59 16 6 C 0.05 0.91 5.39 86.30 0.46 1.38 16 7 C 0.08 1.24 7.23 71.98 0.52 1.76 16 8 O -0.59 -11.05 13.60 -148.98 -2.03 -13.08 16 9 C 0.07 1.83 5.57 86.31 0.48 2.31 16 10 C 0.05 1.82 5.41 86.31 0.47 2.29 16 11 N -0.54 -19.23 4.53 -870.48 -3.94 -23.17 16 12 C 0.08 3.37 4.66 86.31 0.40 3.78 16 13 C 0.00 0.14 3.97 29.85 0.12 0.26 16 14 C -0.53 -31.84 9.66 25.60 0.25 -31.60 16 15 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 16 C 0.01 0.49 5.47 84.66 0.46 0.95 16 17 N -0.95 -60.76 13.96 21.45 0.30 -60.46 16 18 Si 0.95 45.57 27.47 68.60 1.88 47.45 16 19 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.25 -11.26 6.54 99.48 0.65 -10.61 16 22 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.05 1.43 6.15 -2.39 -0.01 1.41 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.09 1.82 6.72 -2.39 -0.02 1.80 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 1.45 7.85 -2.39 -0.02 1.43 16 28 H 0.06 0.98 8.00 -2.39 -0.02 0.96 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.68 6.74 -2.39 -0.02 0.66 16 31 H 0.39 3.71 9.12 -74.06 -0.68 3.03 16 32 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.09 2.11 8.00 -2.39 -0.02 2.09 16 34 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.07 2.60 6.34 -2.39 -0.02 2.58 16 36 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 37 H 0.07 3.07 5.73 -2.39 -0.01 3.05 16 38 H 0.02 1.06 7.20 -2.38 -0.02 1.05 16 39 H 0.01 0.73 5.92 -2.39 -0.01 0.71 16 40 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 Total: -1.00 -71.35 307.60 -3.29 -74.63 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.28 Total: 9.58 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 4.33 Total: -17.36 kcal Atomic # 7 Polarization: -93.47 SS G_CDS: -7.75 Total: -101.22 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -2.03 Total: -13.08 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 1.88 Total: 47.45 kcal Total: -71.35 -3.29 -74.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595522854.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.244 kcal (2) G-P(sol) polarization free energy of solvation -71.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds