Wall clock time and date at job start Mon Mar 30 2020 04:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.50879 * 2 1 4 4 C 1.53052 * 109.49066 * 120.05775 * 2 1 3 5 5 N 1.46962 * 109.36280 * 178.36704 * 4 2 1 6 6 C 1.46906 * 110.99651 * 176.81185 * 5 4 2 7 7 C 1.52994 * 109.46883 * 57.75546 * 6 5 4 8 8 O 1.42900 * 109.47523 * 65.00072 * 7 6 5 9 9 C 1.46948 * 110.88044 * 300.67841 * 5 4 2 10 10 C 1.53052 * 109.36505 * 59.32652 * 9 5 4 11 11 N 1.46958 * 109.35970 * 301.59219 * 10 9 5 12 12 C 1.46906 * 110.99704 * 183.18961 * 11 10 9 13 13 C 1.52993 * 109.47378 * 66.05072 * 12 11 10 14 14 C 1.50696 * 109.47429 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99822 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00339 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47086 * 59.99960 * 18 16 14 20 20 H 1.48503 * 109.47151 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46879 * 299.99904 * 18 16 14 22 22 H 1.08998 * 109.47086 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46693 * 300.05014 * 1 2 3 24 24 H 1.08995 * 109.47127 * 60.04966 * 1 2 3 25 25 H 1.08997 * 109.48533 * 58.40278 * 4 2 1 26 26 H 1.08994 * 109.49023 * 298.33756 * 4 2 1 27 27 H 1.08996 * 109.46697 * 177.75345 * 6 5 4 28 28 H 1.09002 * 109.47246 * 297.75536 * 6 5 4 29 29 H 1.09008 * 109.46780 * 185.00135 * 7 6 5 30 30 H 1.09000 * 109.47259 * 304.99407 * 7 6 5 31 31 H 0.96696 * 114.00363 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.49614 * 299.35574 * 9 5 4 33 33 H 1.09007 * 109.50505 * 179.30134 * 9 5 4 34 34 H 1.09002 * 109.48862 * 181.63344 * 10 9 5 35 35 H 1.08990 * 109.51099 * 61.57358 * 10 9 5 36 36 H 1.09004 * 109.47040 * 186.04861 * 12 11 10 37 37 H 1.09000 * 109.47033 * 306.04813 * 12 11 10 38 38 H 1.09004 * 109.46862 * 299.99897 * 13 12 11 39 39 H 1.09004 * 109.46998 * 59.99419 * 13 12 11 40 40 H 0.97000 * 120.00540 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0407 -0.7227 1.2488 5 7 3.5098 -0.7553 1.2263 6 6 4.0412 -1.3753 2.4475 7 6 3.4760 -2.7900 2.5887 8 8 3.9521 -3.6027 1.5141 9 6 3.9999 -1.4491 0.0272 10 6 3.4894 -0.7263 -1.2216 11 7 2.0203 -0.6938 -1.1992 12 6 1.4889 -0.0738 -2.4203 13 6 1.8149 -0.9587 -3.6251 14 6 1.2691 -0.3230 -4.8777 15 1 0.7428 0.6183 -4.8203 16 6 1.4427 -0.9425 -6.0971 17 7 2.0841 -2.0885 -6.1671 18 14 0.7668 -0.1542 -7.6499 19 1 1.3853 1.1831 -7.8357 20 1 1.0832 -1.0132 -8.8192 21 1 -0.7058 -0.0061 -7.5292 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5146 0.8895 24 1 -0.3633 0.5130 -0.8904 25 1 1.6545 -1.7418 1.2625 26 1 1.7022 -0.1931 2.1393 27 1 5.1285 -1.4228 2.3872 28 1 3.7510 -0.7800 3.3132 29 1 3.7990 -3.2172 3.5381 30 1 2.3870 -2.7507 2.5598 31 1 3.6332 -4.5152 1.5399 32 1 3.6360 -2.4765 0.0271 33 1 5.0900 -1.4494 0.0270 34 1 3.8277 -1.2560 -2.1121 35 1 3.8755 0.2927 -1.2358 36 1 0.4079 0.0353 -2.3316 37 1 1.9431 0.9076 -2.5568 38 1 2.8958 -1.0678 -3.7138 39 1 1.3607 -1.9401 -3.4885 40 1 2.2059 -2.5246 -7.0249 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595522860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:16 Heat of formation + Delta-G solvation = -39.556875 kcal Electronic energy + Delta-G solvation = -18489.701113 eV Core-core repulsion = 15725.453062 eV Total energy + Delta-G solvation = -2764.248051 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.50997 -37.21003 -35.05873 -33.11629 -32.03504 -30.47574 -28.44199 -26.88369 -25.59328 -23.72520 -22.37047 -21.17909 -20.10846 -19.08286 -17.61271 -16.39257 -15.92556 -15.35700 -15.00044 -14.88566 -14.45631 -13.91202 -13.70030 -13.21513 -13.08077 -12.81966 -12.16550 -12.07246 -12.02669 -11.67752 -11.56843 -11.28242 -11.14742 -10.87975 -10.81662 -10.62884 -10.45171 -10.12582 -9.88344 -9.63584 -9.24557 -9.05070 -8.27197 -8.05048 -7.56584 -5.94309 -3.96475 3.36700 3.40825 3.43315 3.95671 4.27513 4.42651 4.59735 4.93597 5.02825 5.15086 5.22407 5.33444 5.41332 5.45561 5.55107 5.71281 5.78218 5.80127 5.88218 5.95189 6.03125 6.19653 6.28508 6.38550 6.46480 6.56502 6.58377 6.71889 7.08720 7.19808 7.26975 7.49957 7.63950 7.70783 7.88951 7.98930 8.16053 8.50241 9.10785 9.66722 11.17075 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.036135 B = 0.005212 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.677344 B = 5370.519866 C = 5802.749306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.081 3.919 3 H 0.039 0.961 4 C 0.062 3.938 5 N -0.538 5.538 6 C 0.055 3.945 7 C 0.035 3.965 8 O -0.559 6.559 9 C 0.052 3.948 10 C 0.056 3.944 11 N -0.533 5.533 12 C 0.059 3.941 13 C 0.029 3.971 14 C -0.521 4.521 15 H 0.052 0.948 16 C 0.059 3.941 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 H 0.061 0.939 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.372 0.628 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.028 0.972 36 H 0.066 0.934 37 H 0.017 0.983 38 H 0.016 0.984 39 H 0.023 0.977 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.493 -0.173 18.219 18.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 H 0.057 0.943 4 C -0.066 4.066 5 N -0.261 5.261 6 C -0.073 4.073 7 C -0.044 4.044 8 O -0.364 6.364 9 C -0.075 4.075 10 C -0.072 4.072 11 N -0.259 5.259 12 C -0.068 4.068 13 C -0.008 4.008 14 C -0.560 4.560 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 H 0.080 0.920 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.220 0.780 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.035 0.965 38 H 0.034 0.966 39 H 0.041 0.959 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.858 0.264 17.922 18.020 hybrid contribution -0.609 -0.102 -0.679 0.918 sum 1.248 0.163 17.243 17.289 Atomic orbital electron populations 1.21873 0.94540 1.02443 1.01497 1.21579 0.94893 0.95708 0.90607 0.94275 1.22205 0.87444 0.99487 0.97460 1.62338 1.08490 1.52968 1.02336 1.22282 1.00755 0.90506 0.93781 1.23004 0.98438 0.93396 0.89587 1.86675 1.75410 1.25562 1.48797 1.22459 0.98926 0.98112 0.87991 1.22204 0.88023 0.98985 0.98009 1.62278 1.07883 1.53602 1.02108 1.22409 0.98817 0.96178 0.89379 1.19073 0.96904 0.95087 0.89726 1.21170 1.35997 1.06767 0.92060 0.92928 1.24982 0.95352 0.94932 0.98989 1.69964 1.41793 1.16312 1.25229 0.86674 0.79459 0.79205 0.82730 1.20320 1.21304 1.20275 0.92000 0.92941 0.91677 0.93849 0.91396 0.90219 0.89729 0.93874 0.93305 0.78041 0.90345 0.91492 0.89363 0.95340 0.91593 0.96466 0.96570 0.95865 0.93002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.89 37.16 0.33 -1.76 16 2 C 0.08 1.31 2.56 -67.65 -0.17 1.14 16 3 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 4 C 0.06 0.86 4.36 -3.76 -0.02 0.84 16 5 N -0.54 -7.61 4.92 -234.47 -1.15 -8.76 16 6 C 0.06 0.61 5.95 -3.82 -0.02 0.59 16 7 C 0.04 0.35 6.82 37.15 0.25 0.60 16 8 O -0.56 -6.42 10.29 -35.23 -0.36 -6.78 16 9 C 0.05 0.84 4.88 -3.77 -0.02 0.82 16 10 C 0.06 1.05 5.41 -3.77 -0.02 1.03 16 11 N -0.53 -10.31 4.53 -226.49 -1.03 -11.33 16 12 C 0.06 1.30 4.66 -3.82 -0.02 1.28 16 13 C 0.03 0.79 4.90 -27.89 -0.14 0.65 16 14 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -27.33 13.29 55.43 0.74 -26.59 16 18 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 1.00 6.15 -51.93 -0.32 0.68 16 25 H 0.04 0.62 6.34 -51.93 -0.33 0.29 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.04 0.34 8.14 -51.92 -0.42 -0.08 16 30 H 0.05 0.49 6.17 -51.93 -0.32 0.17 16 31 H 0.37 2.86 9.12 45.56 0.42 3.27 16 32 H 0.08 1.34 5.35 -51.93 -0.28 1.06 16 33 H 0.07 1.03 8.11 -51.92 -0.42 0.61 16 34 H 0.09 1.82 6.33 -51.93 -0.33 1.49 16 35 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 1.42 5.74 -51.93 -0.30 1.12 16 37 H 0.02 0.39 8.12 -51.93 -0.42 -0.04 16 38 H 0.02 0.46 6.49 -51.93 -0.34 0.12 16 39 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 304.08 15.07 4.58 4.58 Total: -1.00 -31.84 304.08 -8.46 -40.29 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.98 Total: 0.20 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.23 Total: -8.58 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -1.44 Total: -46.68 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.36 Total: -6.78 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.84 -8.46 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595522860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.737 kcal (2) G-P(sol) polarization free energy of solvation -31.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds