Wall clock time and date at job start Mon Mar 30 2020 04:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.50879 * 2 1 4 4 C 1.53052 * 109.49066 * 120.05775 * 2 1 3 5 5 N 1.46962 * 109.36280 * 178.36704 * 4 2 1 6 6 C 1.46906 * 110.99651 * 176.81185 * 5 4 2 7 7 C 1.52994 * 109.46883 * 57.75546 * 6 5 4 8 8 O 1.42900 * 109.47523 * 65.00072 * 7 6 5 9 9 C 1.46948 * 110.88044 * 300.67841 * 5 4 2 10 10 C 1.53052 * 109.36505 * 59.32652 * 9 5 4 11 11 N 1.46958 * 109.35970 * 301.59219 * 10 9 5 12 12 C 1.46906 * 110.99704 * 183.18961 * 11 10 9 13 13 C 1.52993 * 109.47378 * 66.05072 * 12 11 10 14 14 C 1.50696 * 109.47429 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99822 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00339 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99769 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00300 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47086 * 59.99960 * 18 16 14 20 20 H 1.48503 * 109.47151 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46879 * 299.99904 * 18 16 14 22 22 H 1.08998 * 109.47086 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46693 * 300.05014 * 1 2 3 24 24 H 1.08995 * 109.47127 * 60.04966 * 1 2 3 25 25 H 1.08997 * 109.48533 * 58.40278 * 4 2 1 26 26 H 1.08994 * 109.49023 * 298.33756 * 4 2 1 27 27 H 1.08996 * 109.46697 * 177.75345 * 6 5 4 28 28 H 1.09002 * 109.47246 * 297.75536 * 6 5 4 29 29 H 1.09008 * 109.46780 * 185.00135 * 7 6 5 30 30 H 1.09000 * 109.47259 * 304.99407 * 7 6 5 31 31 H 0.96696 * 114.00363 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.49614 * 299.35574 * 9 5 4 33 33 H 1.09007 * 109.50505 * 179.30134 * 9 5 4 34 34 H 1.09002 * 109.48862 * 181.63344 * 10 9 5 35 35 H 1.08990 * 109.51099 * 61.57358 * 10 9 5 36 36 H 1.09004 * 109.47040 * 186.04861 * 12 11 10 37 37 H 1.09000 * 109.47033 * 306.04813 * 12 11 10 38 38 H 1.09004 * 109.46862 * 299.99897 * 13 12 11 39 39 H 1.09004 * 109.46998 * 59.99419 * 13 12 11 40 40 H 0.97000 * 120.00540 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0407 -0.7227 1.2488 5 7 3.5098 -0.7553 1.2263 6 6 4.0412 -1.3753 2.4475 7 6 3.4760 -2.7900 2.5887 8 8 3.9521 -3.6027 1.5141 9 6 3.9999 -1.4491 0.0272 10 6 3.4894 -0.7263 -1.2216 11 7 2.0203 -0.6938 -1.1992 12 6 1.4889 -0.0738 -2.4203 13 6 1.8149 -0.9587 -3.6251 14 6 1.2691 -0.3230 -4.8777 15 1 0.7428 0.6183 -4.8203 16 6 1.4427 -0.9425 -6.0971 17 7 2.0841 -2.0885 -6.1671 18 14 0.7668 -0.1542 -7.6499 19 1 1.3853 1.1831 -7.8357 20 1 1.0832 -1.0132 -8.8192 21 1 -0.7058 -0.0061 -7.5292 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5146 0.8895 24 1 -0.3633 0.5130 -0.8904 25 1 1.6545 -1.7418 1.2625 26 1 1.7022 -0.1931 2.1393 27 1 5.1285 -1.4228 2.3872 28 1 3.7510 -0.7800 3.3132 29 1 3.7990 -3.2172 3.5381 30 1 2.3870 -2.7507 2.5598 31 1 3.6332 -4.5152 1.5399 32 1 3.6360 -2.4765 0.0271 33 1 5.0900 -1.4494 0.0270 34 1 3.8277 -1.2560 -2.1121 35 1 3.8755 0.2927 -1.2358 36 1 0.4079 0.0353 -2.3316 37 1 1.9431 0.9076 -2.5568 38 1 2.8958 -1.0678 -3.7138 39 1 1.3607 -1.9401 -3.4885 40 1 2.2059 -2.5246 -7.0249 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595522860.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:15 Heat of formation + Delta-G solvation = -65.148779 kcal Electronic energy + Delta-G solvation = -18490.810861 eV Core-core repulsion = 15725.453062 eV Total energy + Delta-G solvation = -2765.357800 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.74366 -38.32634 -36.30294 -35.08468 -33.48162 -32.08242 -29.89424 -28.13002 -27.05800 -25.50090 -23.57517 -22.56993 -21.71446 -20.42555 -18.59534 -18.40355 -16.98581 -16.70977 -16.49305 -16.32529 -16.08918 -15.23207 -15.12759 -14.77056 -14.32278 -14.10293 -13.94503 -13.28100 -13.19163 -13.16718 -12.89470 -12.72189 -12.69381 -12.54981 -12.31611 -12.02831 -11.94380 -11.80932 -11.43195 -11.17130 -11.10524 -10.74695 -10.52132 -9.24520 -9.04877 -8.19201 -6.31052 1.39894 1.43652 1.51531 2.40710 2.96033 3.05045 3.13812 3.47535 3.89086 4.06329 4.11120 4.22359 4.30827 4.35744 4.45883 4.48426 4.54531 4.58196 4.65303 4.80817 4.83412 4.84893 4.89005 4.98132 5.06435 5.13517 5.17138 5.27424 5.41137 5.46796 5.66592 5.79385 6.06514 6.07982 6.22068 6.37436 6.38088 6.85669 6.86409 7.37959 8.92914 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.036135 B = 0.005212 C = 0.004824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.677344 B = 5370.519866 C = 5802.749306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.076 3.924 3 H 0.033 0.967 4 C 0.069 3.931 5 N -0.547 5.547 6 C 0.053 3.947 7 C 0.036 3.964 8 O -0.584 6.584 9 C 0.066 3.934 10 C 0.058 3.942 11 N -0.542 5.542 12 C 0.076 3.924 13 C 0.040 3.960 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.002 3.998 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.268 1.268 20 H -0.282 1.282 21 H -0.265 1.265 22 H 0.057 0.943 23 H 0.086 0.914 24 H 0.050 0.950 25 H 0.040 0.960 26 H 0.100 0.900 27 H 0.077 0.923 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.387 0.613 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.021 0.979 36 H 0.074 0.926 37 H 0.011 0.989 38 H -0.011 1.011 39 H -0.009 1.009 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.602 0.703 19.743 19.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.032 4.032 3 H 0.051 0.949 4 C -0.059 4.059 5 N -0.270 5.270 6 C -0.075 4.075 7 C -0.043 4.043 8 O -0.393 6.393 9 C -0.062 4.062 10 C -0.070 4.070 11 N -0.267 5.267 12 C -0.051 4.051 13 C 0.002 3.998 14 C -0.584 4.584 15 H 0.078 0.922 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.192 1.192 20 H -0.207 1.207 21 H -0.190 1.190 22 H 0.076 0.924 23 H 0.105 0.895 24 H 0.069 0.931 25 H 0.058 0.942 26 H 0.118 0.882 27 H 0.095 0.905 28 H 0.129 0.871 29 H 0.087 0.913 30 H 0.067 0.933 31 H 0.237 0.763 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.092 0.908 37 H 0.029 0.971 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.962 1.136 19.481 19.538 hybrid contribution -0.295 -0.409 -1.091 1.202 sum 0.667 0.727 18.390 18.417 Atomic orbital electron populations 1.21840 0.93028 1.02450 1.02490 1.21774 0.96168 0.95303 0.89952 0.94922 1.22192 0.87208 0.99354 0.97165 1.62312 1.08780 1.53290 1.02659 1.22427 1.00619 0.91543 0.92931 1.23025 0.98298 0.92730 0.90229 1.86609 1.75877 1.26929 1.49839 1.22230 0.98898 0.97244 0.87802 1.22127 0.87940 0.98440 0.98492 1.62229 1.08096 1.54049 1.02348 1.22055 0.99305 0.94648 0.89135 1.18883 0.94729 0.94363 0.91806 1.21590 1.36391 1.07258 0.93178 0.92246 1.25972 0.95390 0.95365 1.02856 1.70112 1.42872 1.17863 1.26356 0.85474 0.79176 0.78381 0.77835 1.19250 1.20711 1.18980 0.92435 0.89495 0.93118 0.94176 0.88225 0.90464 0.87076 0.91319 0.93288 0.76338 0.91249 0.91213 0.92570 0.96075 0.90776 0.97119 0.99228 0.99071 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.76 8.89 71.98 0.64 -3.12 16 2 C 0.08 2.37 2.56 44.92 0.12 2.48 16 3 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 4 C 0.07 1.73 4.36 86.31 0.38 2.11 16 5 N -0.55 -14.49 4.92 -895.72 -4.40 -18.90 16 6 C 0.05 1.01 5.95 86.30 0.51 1.52 16 7 C 0.04 0.62 6.82 71.98 0.49 1.11 16 8 O -0.58 -12.70 10.29 -148.98 -1.53 -14.24 16 9 C 0.07 2.12 4.88 86.31 0.42 2.54 16 10 C 0.06 2.28 5.41 86.31 0.47 2.75 16 11 N -0.54 -21.35 4.53 -870.47 -3.94 -25.30 16 12 C 0.08 3.45 4.66 86.30 0.40 3.85 16 13 C 0.04 2.23 4.90 29.84 0.15 2.37 16 14 C -0.55 -32.27 9.11 25.60 0.23 -32.04 16 15 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 16 C 0.00 0.13 5.46 84.65 0.46 0.59 16 17 N -0.93 -58.44 13.29 21.45 0.28 -58.15 16 18 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 24 H 0.05 1.49 6.15 -2.39 -0.01 1.48 16 25 H 0.04 1.06 6.34 -2.39 -0.02 1.04 16 26 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 28 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.05 0.85 6.17 -2.39 -0.01 0.84 16 31 H 0.39 5.53 9.12 -74.06 -0.68 4.85 16 32 H 0.07 2.39 5.35 -2.39 -0.01 2.37 16 33 H 0.07 2.17 8.11 -2.38 -0.02 2.15 16 34 H 0.06 2.51 6.33 -2.39 -0.02 2.49 16 35 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.07 3.23 5.74 -2.38 -0.01 3.22 16 37 H 0.01 0.49 8.12 -2.39 -0.02 0.47 16 38 H -0.01 -0.64 6.49 -2.38 -0.02 -0.66 16 39 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 40 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -70.04 304.08 -2.96 -73.01 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 0.34 Total: 12.14 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 4.27 Total: -15.82 kcal Atomic # 7 Polarization: -94.29 SS G_CDS: -8.06 Total: -102.35 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: -1.53 Total: -14.24 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -70.04 -2.96 -73.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595522860.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.857 kcal (2) G-P(sol) polarization free energy of solvation -70.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds