Wall clock time and date at job start Mon Mar 30 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47261 * 2 1 4 4 C 1.52993 * 109.46851 * 120.00022 * 2 1 3 5 5 O 1.42909 * 109.47062 * 294.99994 * 4 2 1 6 6 C 1.52995 * 109.46849 * 239.99664 * 2 1 3 7 7 N 1.46899 * 109.47238 * 65.24354 * 6 2 1 8 8 C 1.46958 * 111.00086 * 199.56814 * 7 6 2 9 9 C 1.53056 * 109.36393 * 176.81019 * 8 7 6 10 10 N 1.46955 * 109.36423 * 58.40501 * 9 8 7 11 11 C 1.46899 * 111.00029 * 176.80968 * 10 9 8 12 12 C 1.50702 * 109.47228 * 293.80247 * 11 10 9 13 13 H 1.07998 * 119.99902 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00019 * 179.97438 * 12 11 10 15 15 N 1.31526 * 120.00022 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00184 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47007 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47189 * 120.00021 * 16 14 12 19 19 H 1.48496 * 109.47486 * 240.00297 * 16 14 12 20 20 C 1.46958 * 110.87773 * 300.67689 * 10 9 8 21 21 C 1.46955 * 111.00029 * 75.77122 * 7 6 2 22 22 H 1.08997 * 109.47513 * 184.85526 * 1 2 3 23 23 H 1.09004 * 109.47245 * 304.85990 * 1 2 3 24 24 H 1.09004 * 109.46940 * 64.85722 * 1 2 3 25 25 H 1.09000 * 109.47069 * 175.00164 * 4 2 1 26 26 H 1.09002 * 109.47457 * 54.99510 * 4 2 1 27 27 H 0.96698 * 113.99939 * 180.02562 * 5 4 2 28 28 H 1.09005 * 109.46658 * 185.23653 * 6 2 1 29 29 H 1.08996 * 109.47675 * 305.23661 * 6 2 1 30 30 H 1.08996 * 109.49046 * 296.77894 * 8 7 6 31 31 H 1.09003 * 109.48585 * 56.84443 * 8 7 6 32 32 H 1.08998 * 109.48992 * 298.43589 * 9 8 7 33 33 H 1.08993 * 109.48654 * 178.37335 * 9 8 7 34 34 H 1.09006 * 109.47007 * 53.79872 * 11 10 9 35 35 H 1.09002 * 109.47171 * 173.79790 * 11 10 9 36 36 H 0.97000 * 119.99473 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.49046 * 299.35418 * 20 10 9 38 38 H 1.09003 * 109.48585 * 179.28868 * 20 10 9 39 39 H 1.09001 * 109.49072 * 303.15276 * 21 7 6 40 40 H 1.08997 * 109.49307 * 63.22591 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 8 1.6618 0.0168 2.4131 6 6 2.0399 -0.7213 -1.2492 7 7 1.6563 0.0403 -2.4453 8 6 1.7017 -0.8062 -3.6457 9 6 1.2202 0.0004 -4.8541 10 7 2.0709 1.1874 -5.0178 11 6 1.6873 1.9491 -6.2140 12 6 1.9785 1.1306 -7.4454 13 1 2.4061 0.1436 -7.3492 14 6 1.6989 1.6419 -8.6949 15 7 1.1776 2.8437 -8.8122 16 14 2.0604 0.6278 -10.2214 17 1 2.6410 -0.6791 -9.8213 18 1 0.8009 0.4007 -10.9745 19 1 3.0273 1.3557 -11.0819 20 6 2.0255 2.0340 -3.8174 21 6 2.5071 1.2273 -2.6091 22 1 -0.3634 -1.0239 0.0870 23 1 -0.3634 0.5874 0.8433 24 1 -0.3633 0.4367 -0.9303 25 1 3.1263 -0.7994 1.2056 26 1 1.6052 -1.7198 1.2952 27 1 1.9530 -0.3828 3.2440 28 1 3.1260 -0.8032 -1.2035 29 1 1.6021 -1.7183 -1.2973 30 1 2.7249 -1.1409 -3.8162 31 1 1.0544 -1.6718 -3.5049 32 1 0.1878 0.3120 -4.6953 33 1 1.2804 -0.6166 -5.7505 34 1 0.6223 2.1776 -6.1731 35 1 2.2570 2.8776 -6.2517 36 1 0.9813 3.2035 -9.6913 37 1 1.0023 2.3686 -3.6469 38 1 2.6729 2.8996 -3.9582 39 1 2.4468 1.8444 -1.7126 40 1 3.5394 0.9158 -2.7679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611236023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:31 Heat of formation + Delta-G solvation = -49.634918 kcal Electronic energy + Delta-G solvation = -18026.307977 eV Core-core repulsion = 15261.622909 eV Total energy + Delta-G solvation = -2764.685068 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.02935 -37.47936 -35.48933 -33.25012 -32.12484 -30.40148 -28.16523 -26.57264 -25.63188 -23.55614 -22.95581 -21.39872 -19.96974 -19.12806 -17.55843 -16.30253 -16.00014 -15.51181 -14.67215 -14.59554 -14.33713 -14.16091 -13.91088 -13.70127 -13.06328 -12.87883 -12.54411 -12.23290 -12.04249 -11.66056 -11.20168 -11.14359 -11.01422 -10.82611 -10.78177 -10.63677 -10.58265 -10.30971 -10.19395 -10.13410 -9.69358 -9.14014 -8.42731 -8.08857 -7.19515 -6.01215 -4.02574 3.31619 3.38912 3.43579 3.78766 4.39179 4.43678 4.75139 4.96546 4.98804 5.04072 5.24116 5.34373 5.35788 5.44968 5.51243 5.62019 5.65235 5.81786 5.84193 5.89758 5.94976 6.08906 6.12793 6.20438 6.31164 6.46299 6.48221 6.63218 6.71581 7.22531 7.27102 7.38267 7.41069 7.42214 7.82195 8.11616 8.23783 8.57748 9.05363 9.61658 11.09730 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.059384 B = 0.004232 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.392283 B = 6615.302317 C = 6790.292701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 H 0.077 0.923 4 C 0.080 3.920 5 O -0.572 6.572 6 C 0.062 3.938 7 N -0.536 5.536 8 C 0.059 3.941 9 C 0.068 3.932 10 N -0.539 5.539 11 C 0.193 3.807 12 C -0.506 4.506 13 H 0.063 0.937 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.284 1.284 20 C 0.056 3.944 21 C 0.060 3.940 22 H 0.044 0.956 23 H 0.051 0.949 24 H 0.069 0.931 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.376 0.624 28 H 0.033 0.967 29 H 0.071 0.929 30 H 0.037 0.963 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.086 0.914 34 H -0.008 1.008 35 H 0.029 0.971 36 H 0.260 0.740 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.366 -7.552 18.216 19.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 H 0.095 0.905 4 C 0.002 3.998 5 O -0.376 6.376 6 C -0.067 4.067 7 N -0.260 5.260 8 C -0.069 4.069 9 C -0.061 4.061 10 N -0.264 5.264 11 C 0.068 3.932 12 C -0.545 4.545 13 H 0.081 0.919 14 C -0.147 4.147 15 N -0.538 5.538 16 Si 0.725 3.275 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.210 1.210 20 C -0.073 4.073 21 C -0.068 4.068 22 H 0.063 0.937 23 H 0.070 0.930 24 H 0.088 0.912 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.222 0.778 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.047 0.953 33 H 0.104 0.896 34 H 0.009 0.991 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.041 -7.029 17.601 18.982 hybrid contribution 0.466 -0.809 -0.504 1.061 sum 1.506 -7.838 17.098 18.869 Atomic orbital electron populations 1.21636 0.93979 1.01092 1.02319 1.21076 0.97617 1.00330 0.91528 0.90463 1.22226 0.97667 0.94151 0.85745 1.86498 1.81528 1.53332 1.16279 1.21999 0.97739 0.96900 0.90045 1.62057 1.53587 1.07926 1.02472 1.22251 0.99792 0.95215 0.89618 1.21984 0.94354 0.93400 0.96367 1.62280 1.53368 1.07807 1.02948 1.19709 0.94215 0.93480 0.85826 1.21196 1.40824 1.02327 0.90115 0.91890 1.24999 0.95383 0.95130 0.99173 1.69979 1.44016 1.16170 1.23654 0.86449 0.77849 0.80298 0.82864 1.19692 1.21115 1.21045 1.22060 0.99336 0.95608 0.90254 1.22203 0.94589 0.91945 0.98046 0.93675 0.93000 0.91163 0.93973 0.93749 0.77776 0.94836 0.91064 0.94433 0.91228 0.95321 0.89608 0.99052 0.95252 0.93001 0.95147 0.91111 0.91189 0.94414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.98 37.16 0.33 -1.24 16 2 C -0.09 -0.97 2.68 -90.62 -0.24 -1.22 16 3 H 0.08 0.97 6.73 -51.93 -0.35 0.62 16 4 C 0.08 0.74 6.43 37.15 0.24 0.98 16 5 O -0.57 -5.49 13.28 -35.23 -0.47 -5.96 16 6 C 0.06 0.73 4.39 -3.83 -0.02 0.71 16 7 N -0.54 -7.95 4.02 -234.46 -0.94 -8.89 16 8 C 0.06 0.94 5.57 -3.76 -0.02 0.92 16 9 C 0.07 1.35 5.43 -3.76 -0.02 1.33 16 10 N -0.54 -11.91 4.70 -235.90 -1.11 -13.02 16 11 C 0.19 5.12 4.72 -4.98 -0.02 5.10 16 12 C -0.51 -14.32 8.47 -34.44 -0.29 -14.62 16 13 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 14 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 15 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 16 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 17 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.06 1.06 5.61 -3.76 -0.02 1.04 16 21 C 0.06 0.94 5.43 -3.76 -0.02 0.92 16 22 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.05 0.62 7.95 -51.93 -0.41 0.21 16 24 H 0.07 0.94 7.63 -51.93 -0.40 0.55 16 25 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 26 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.38 1.80 9.12 45.56 0.42 2.22 16 28 H 0.03 0.39 8.00 -51.93 -0.42 -0.03 16 29 H 0.07 0.78 7.84 -51.93 -0.41 0.37 16 30 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 35 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.31 8.07 -51.93 -0.42 0.89 16 39 H 0.07 0.97 6.71 -51.93 -0.35 0.62 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 314.74 15.07 4.74 4.74 Total: -1.00 -31.24 314.74 -8.65 -39.90 By element: Atomic # 1 Polarization: 3.77 SS G_CDS: -6.41 Total: -2.64 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: -0.18 Total: -4.62 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -1.32 Total: -48.13 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.47 Total: -5.96 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.24 -8.65 -39.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611236023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.738 kcal (2) G-P(sol) polarization free energy of solvation -31.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds