Wall clock time and date at job start Mon Mar 30 2020 05:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.47261 * 2 1 4 4 C 1.52993 * 109.46851 * 120.00022 * 2 1 3 5 5 O 1.42909 * 109.47062 * 294.99994 * 4 2 1 6 6 C 1.52995 * 109.46849 * 239.99664 * 2 1 3 7 7 N 1.46899 * 109.47238 * 65.24354 * 6 2 1 8 8 C 1.46958 * 111.00086 * 199.56814 * 7 6 2 9 9 C 1.53056 * 109.36393 * 176.81019 * 8 7 6 10 10 N 1.46955 * 109.36423 * 58.40501 * 9 8 7 11 11 C 1.46899 * 111.00029 * 176.80968 * 10 9 8 12 12 C 1.50702 * 109.47228 * 293.80247 * 11 10 9 13 13 H 1.07998 * 119.99902 * 359.97438 * 12 11 10 14 14 C 1.37870 * 120.00019 * 179.97438 * 12 11 10 15 15 N 1.31526 * 120.00022 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00184 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.47007 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47189 * 120.00021 * 16 14 12 19 19 H 1.48496 * 109.47486 * 240.00297 * 16 14 12 20 20 C 1.46958 * 110.87773 * 300.67689 * 10 9 8 21 21 C 1.46955 * 111.00029 * 75.77122 * 7 6 2 22 22 H 1.08997 * 109.47513 * 184.85526 * 1 2 3 23 23 H 1.09004 * 109.47245 * 304.85990 * 1 2 3 24 24 H 1.09004 * 109.46940 * 64.85722 * 1 2 3 25 25 H 1.09000 * 109.47069 * 175.00164 * 4 2 1 26 26 H 1.09002 * 109.47457 * 54.99510 * 4 2 1 27 27 H 0.96698 * 113.99939 * 180.02562 * 5 4 2 28 28 H 1.09005 * 109.46658 * 185.23653 * 6 2 1 29 29 H 1.08996 * 109.47675 * 305.23661 * 6 2 1 30 30 H 1.08996 * 109.49046 * 296.77894 * 8 7 6 31 31 H 1.09003 * 109.48585 * 56.84443 * 8 7 6 32 32 H 1.08998 * 109.48992 * 298.43589 * 9 8 7 33 33 H 1.08993 * 109.48654 * 178.37335 * 9 8 7 34 34 H 1.09006 * 109.47007 * 53.79872 * 11 10 9 35 35 H 1.09002 * 109.47171 * 173.79790 * 11 10 9 36 36 H 0.97000 * 119.99473 * 179.97438 * 15 14 12 37 37 H 1.08996 * 109.49046 * 299.35418 * 20 10 9 38 38 H 1.09003 * 109.48585 * 179.28868 * 20 10 9 39 39 H 1.09001 * 109.49072 * 303.15276 * 21 7 6 40 40 H 1.08997 * 109.49307 * 63.22591 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 1.2492 5 8 1.6618 0.0168 2.4131 6 6 2.0399 -0.7213 -1.2492 7 7 1.6563 0.0403 -2.4453 8 6 1.7017 -0.8062 -3.6457 9 6 1.2202 0.0004 -4.8541 10 7 2.0709 1.1874 -5.0178 11 6 1.6873 1.9491 -6.2140 12 6 1.9785 1.1306 -7.4454 13 1 2.4061 0.1436 -7.3492 14 6 1.6989 1.6419 -8.6949 15 7 1.1776 2.8437 -8.8122 16 14 2.0604 0.6278 -10.2214 17 1 2.6410 -0.6791 -9.8213 18 1 0.8009 0.4007 -10.9745 19 1 3.0273 1.3557 -11.0819 20 6 2.0255 2.0340 -3.8174 21 6 2.5071 1.2273 -2.6091 22 1 -0.3634 -1.0239 0.0870 23 1 -0.3634 0.5874 0.8433 24 1 -0.3633 0.4367 -0.9303 25 1 3.1263 -0.7994 1.2056 26 1 1.6052 -1.7198 1.2952 27 1 1.9530 -0.3828 3.2440 28 1 3.1260 -0.8032 -1.2035 29 1 1.6021 -1.7183 -1.2973 30 1 2.7249 -1.1409 -3.8162 31 1 1.0544 -1.6718 -3.5049 32 1 0.1878 0.3120 -4.6953 33 1 1.2804 -0.6166 -5.7505 34 1 0.6223 2.1776 -6.1731 35 1 2.2570 2.8776 -6.2517 36 1 0.9813 3.2035 -9.6913 37 1 1.0023 2.3686 -3.6469 38 1 2.6729 2.8996 -3.9582 39 1 2.4468 1.8444 -1.7126 40 1 3.5394 0.9158 -2.7679 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611236023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:30 Heat of formation + Delta-G solvation = -74.173905 kcal Electronic energy + Delta-G solvation = -18027.372067 eV Core-core repulsion = 15261.622909 eV Total energy + Delta-G solvation = -2765.749159 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.33457 -38.42348 -36.79149 -34.89049 -33.71825 -31.85420 -29.88713 -27.65023 -27.05493 -24.93053 -24.41346 -23.20406 -20.91552 -20.58993 -18.49291 -18.27150 -17.28174 -16.56822 -16.35924 -15.89050 -15.70860 -15.53953 -15.26414 -15.14260 -14.33966 -14.24433 -13.91996 -13.52575 -13.38698 -13.12918 -12.91271 -12.69371 -12.52217 -12.26379 -12.18893 -12.15040 -11.94853 -11.66336 -11.50466 -11.40470 -11.12282 -10.81105 -10.63263 -9.28527 -9.03302 -8.21410 -6.32138 1.40991 1.41629 1.55466 2.39929 2.81296 3.10795 3.29640 3.54712 3.92229 3.97434 4.15326 4.20782 4.25037 4.37366 4.40246 4.48842 4.57490 4.64621 4.67928 4.70246 4.80193 4.90098 4.95982 4.99894 5.03301 5.08773 5.18913 5.22649 5.27521 5.39045 5.51438 5.63348 6.01256 6.08002 6.14940 6.35123 6.61230 6.84133 6.97380 7.37866 8.90257 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.059384 B = 0.004232 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.392283 B = 6615.302317 C = 6790.292701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.085 4.085 3 H 0.061 0.939 4 C 0.084 3.916 5 O -0.593 6.593 6 C 0.066 3.934 7 N -0.545 5.545 8 C 0.072 3.928 9 C 0.068 3.932 10 N -0.544 5.544 11 C 0.208 3.792 12 C -0.522 4.522 13 H 0.064 0.936 14 C -0.001 4.001 15 N -0.936 5.936 16 Si 0.973 3.027 17 H -0.261 1.261 18 H -0.278 1.278 19 H -0.278 1.278 20 C 0.054 3.946 21 C 0.072 3.928 22 H 0.055 0.945 23 H 0.045 0.955 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.396 0.604 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.096 0.904 32 H 0.014 0.986 33 H 0.069 0.931 34 H -0.042 1.042 35 H 0.002 0.998 36 H 0.265 0.735 37 H 0.018 0.982 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.215 -9.669 19.304 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.104 4.104 3 H 0.080 0.920 4 C 0.006 3.994 5 O -0.401 6.401 6 C -0.062 4.062 7 N -0.270 5.270 8 C -0.056 4.056 9 C -0.060 4.060 10 N -0.269 5.269 11 C 0.081 3.919 12 C -0.560 4.560 13 H 0.082 0.918 14 C -0.198 4.198 15 N -0.577 5.577 16 Si 0.797 3.203 17 H -0.185 1.185 18 H -0.204 1.204 19 H -0.204 1.204 20 C -0.074 4.074 21 C -0.056 4.056 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.246 0.754 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.057 0.943 31 H 0.114 0.886 32 H 0.032 0.968 33 H 0.088 0.912 34 H -0.024 1.024 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.899 -9.165 18.738 20.945 hybrid contribution 0.164 -0.103 -0.762 0.786 sum 2.063 -9.268 17.976 20.329 Atomic orbital electron populations 1.21565 0.94622 1.01438 1.00882 1.21043 0.96995 0.99793 0.92614 0.92012 1.22160 0.98408 0.94199 0.84643 1.86441 1.81955 1.54242 1.17494 1.22037 0.98518 0.97144 0.88488 1.62022 1.53826 1.08005 1.03143 1.22107 1.00165 0.95122 0.88252 1.21990 0.93446 0.92628 0.97963 1.62227 1.53577 1.08364 1.02696 1.19365 0.91592 0.92925 0.87992 1.21474 1.40998 1.02518 0.91048 0.91754 1.25968 0.94862 0.96282 1.02736 1.70111 1.44842 1.17967 1.24741 0.85279 0.77896 0.78838 0.78263 1.18528 1.20375 1.20394 1.22151 0.98835 0.95992 0.90454 1.22068 0.94402 0.92272 0.96854 0.92549 0.93593 0.93255 0.92696 0.92217 0.75409 0.93783 0.89429 0.94323 0.88587 0.96804 0.91247 1.02389 0.97939 0.92666 0.96341 0.91304 0.89168 0.94295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.98 71.98 0.65 -2.15 16 2 C -0.09 -1.71 2.68 -10.80 -0.03 -1.74 16 3 H 0.06 1.43 6.73 -2.39 -0.02 1.42 16 4 C 0.08 1.27 6.43 71.98 0.46 1.73 16 5 O -0.59 -9.87 13.28 -148.98 -1.98 -11.85 16 6 C 0.07 1.35 4.39 86.30 0.38 1.73 16 7 N -0.54 -15.16 4.02 -895.71 -3.61 -18.77 16 8 C 0.07 2.15 5.57 86.31 0.48 2.63 16 9 C 0.07 2.74 5.43 86.31 0.47 3.21 16 10 N -0.54 -24.64 4.70 -900.26 -4.23 -28.87 16 11 C 0.21 11.55 4.72 85.56 0.40 11.96 16 12 C -0.52 -30.23 8.47 25.60 0.22 -30.01 16 13 H 0.06 3.63 7.13 -2.91 -0.02 3.61 16 14 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 15 N -0.94 -57.46 13.29 21.45 0.28 -57.18 16 16 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 17 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.05 2.08 5.61 86.31 0.48 2.57 16 21 C 0.07 2.15 5.43 86.31 0.47 2.62 16 22 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.04 1.04 7.95 -2.39 -0.02 1.03 16 24 H 0.05 1.28 7.63 -2.38 -0.02 1.26 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.40 2.72 9.12 -74.06 -0.68 2.05 16 28 H 0.04 0.85 8.00 -2.38 -0.02 0.83 16 29 H 0.09 1.56 7.84 -2.39 -0.02 1.54 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.10 2.41 8.00 -2.39 -0.02 2.39 16 32 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 2.98 6.79 -2.39 -0.02 2.96 16 34 H -0.04 -2.53 8.12 -2.38 -0.02 -2.55 16 35 H 0.00 0.15 8.03 -2.39 -0.02 0.13 16 36 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 38 H 0.07 2.62 8.07 -2.39 -0.02 2.60 16 39 H 0.09 2.36 6.71 -2.39 -0.02 2.34 16 40 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -68.36 314.74 -2.74 -71.11 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: 0.32 Total: 5.86 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 4.44 Total: -7.03 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -7.55 Total: -104.82 kcal Atomic # 8 Polarization: -9.87 SS G_CDS: -1.98 Total: -11.85 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -68.36 -2.74 -71.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611236023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.067 kcal (2) G-P(sol) polarization free energy of solvation -68.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds