Wall clock time and date at job start Mon Mar 30 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47158 * 2 1 4 4 C 1.52999 * 109.47157 * 240.00108 * 2 1 3 5 5 O 1.42903 * 109.47256 * 65.00201 * 4 2 1 6 6 C 1.52996 * 109.47324 * 120.00161 * 2 1 3 7 7 N 1.46903 * 109.47288 * 295.00215 * 6 2 1 8 8 C 1.46955 * 110.99695 * 293.80227 * 7 6 2 9 9 C 1.53051 * 109.36253 * 176.80959 * 8 7 6 10 10 N 1.46959 * 109.36577 * 58.39860 * 9 8 7 11 11 C 1.46904 * 110.99952 * 176.81182 * 10 9 8 12 12 C 1.50700 * 109.47151 * 293.79655 * 11 10 9 13 13 H 1.08001 * 119.99872 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00080 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99894 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00065 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47494 * 59.99856 * 16 14 12 18 18 H 1.48505 * 109.46991 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47133 * 299.99966 * 16 14 12 20 20 C 1.46953 * 110.87757 * 300.68083 * 10 9 8 21 21 C 1.46945 * 111.00165 * 169.99913 * 7 6 2 22 22 H 1.09001 * 109.46943 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47294 * 299.99780 * 1 2 3 24 24 H 1.08996 * 109.47473 * 60.00361 * 1 2 3 25 25 H 1.08997 * 109.47286 * 304.99761 * 4 2 1 26 26 H 1.09008 * 109.47201 * 184.99542 * 4 2 1 27 27 H 0.96700 * 114.00311 * 180.02562 * 5 4 2 28 28 H 1.08998 * 109.47199 * 54.99936 * 6 2 1 29 29 H 1.08997 * 109.47072 * 175.00220 * 6 2 1 30 30 H 1.09001 * 109.49030 * 296.77369 * 8 7 6 31 31 H 1.08994 * 109.49119 * 56.84175 * 8 7 6 32 32 H 1.08995 * 109.48885 * 298.43104 * 9 8 7 33 33 H 1.08999 * 109.50788 * 178.37534 * 9 8 7 34 34 H 1.08990 * 109.46916 * 53.79963 * 11 10 9 35 35 H 1.09000 * 109.46943 * 173.79732 * 11 10 9 36 36 H 0.97000 * 120.00061 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.48982 * 299.34726 * 20 10 9 38 38 H 1.09008 * 109.48925 * 179.29104 * 20 10 9 39 39 H 1.09001 * 109.49325 * 303.15320 * 21 7 6 40 40 H 1.09001 * 109.49310 * 63.21966 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0168 -2.4131 6 6 2.0400 -0.7213 1.2492 7 7 1.6514 0.0373 2.4456 8 6 2.3371 1.3363 2.4913 9 6 1.8465 2.1266 3.7068 10 7 2.1077 1.3531 4.9287 11 6 1.7191 2.1118 6.1251 12 6 2.6137 3.3160 6.2690 13 1 3.3927 3.4996 5.5439 14 6 2.4376 4.1832 7.3262 15 7 1.4892 3.9594 8.2094 16 14 3.5460 5.6762 7.5041 17 1 3.4086 6.5406 6.3044 18 1 3.1539 6.4424 8.7143 19 1 4.9570 5.2324 7.6354 20 6 1.4220 0.0542 4.8829 21 6 1.9126 -0.7361 3.6675 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.6054 -1.7198 -1.2952 26 1 3.1264 -0.7994 -1.2056 27 1 1.9526 -0.3832 -3.2441 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7994 1.2055 30 1 3.4125 1.1773 2.5709 31 1 2.1181 1.8953 1.5816 32 1 0.7760 2.3092 3.6139 33 1 2.3747 3.0786 3.7592 34 1 0.6836 2.4379 6.0280 35 1 1.8192 1.4775 7.0059 36 1 1.3655 4.5693 8.9535 37 1 0.3466 0.2132 4.8035 38 1 1.6409 -0.5049 5.7928 39 1 1.3841 -1.6880 3.6153 40 1 2.9831 -0.9188 3.7604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611236024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:34 Heat of formation + Delta-G solvation = -48.803411 kcal Electronic energy + Delta-G solvation = -18073.777081 eV Core-core repulsion = 15309.128070 eV Total energy + Delta-G solvation = -2764.649011 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.06116 -37.46735 -35.49683 -33.24617 -32.09595 -30.38576 -28.18903 -26.57616 -25.61732 -23.44518 -23.12167 -21.35927 -19.95909 -19.09764 -17.55330 -16.29352 -16.02887 -15.50642 -14.70745 -14.53733 -14.34655 -14.16850 -13.90245 -13.72593 -13.05444 -12.87811 -12.54767 -12.17925 -12.00331 -11.73546 -11.28251 -11.04481 -11.01859 -10.85692 -10.74173 -10.63767 -10.56002 -10.26576 -10.23569 -10.12217 -9.66345 -9.16352 -8.41300 -8.08458 -7.19246 -6.00343 -4.01833 3.35060 3.38899 3.41880 3.79732 4.38439 4.44378 4.75313 4.95947 4.99728 5.03685 5.24873 5.34991 5.36443 5.44395 5.51329 5.61466 5.65186 5.80967 5.86349 5.89187 5.95300 6.10173 6.12614 6.20621 6.31905 6.43750 6.48383 6.64105 6.73279 7.22436 7.27564 7.38246 7.41805 7.42852 7.82349 8.12131 8.24223 8.58385 9.05469 9.62296 11.10559 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038359 B = 0.004609 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.767427 B = 6073.038102 C = 6469.775044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.090 4.090 3 H 0.080 0.920 4 C 0.081 3.919 5 O -0.571 6.571 6 C 0.063 3.937 7 N -0.535 5.535 8 C 0.055 3.945 9 C 0.068 3.932 10 N -0.539 5.539 11 C 0.194 3.806 12 C -0.508 4.508 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C 0.057 3.943 21 C 0.062 3.938 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.042 0.958 27 H 0.376 0.624 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.028 0.972 33 H 0.085 0.915 34 H -0.009 1.009 35 H 0.029 0.971 36 H 0.262 0.738 37 H 0.030 0.970 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.457 -10.609 -16.564 19.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.109 4.109 3 H 0.098 0.902 4 C 0.003 3.997 5 O -0.376 6.376 6 C -0.066 4.066 7 N -0.260 5.260 8 C -0.073 4.073 9 C -0.061 4.061 10 N -0.264 5.264 11 C 0.069 3.931 12 C -0.546 4.546 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.072 4.072 21 C -0.066 4.066 22 H 0.064 0.936 23 H 0.087 0.913 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.222 0.778 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.104 0.896 34 H 0.009 0.991 35 H 0.047 0.953 36 H 0.071 0.929 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.109 -10.138 -15.912 18.867 hybrid contribution 0.840 0.376 -0.155 0.934 sum 0.949 -9.762 -16.066 18.824 Atomic orbital electron populations 1.21625 0.93904 1.01293 1.02139 1.21129 0.97692 1.00482 0.91600 0.90223 1.22205 0.97674 0.94115 0.85737 1.86498 1.81547 1.53297 1.16268 1.21997 0.97577 0.97099 0.89910 1.62097 1.58226 1.04180 1.01514 1.22305 0.96176 0.89960 0.98820 1.21982 0.98669 0.96934 0.88507 1.62283 1.57181 1.03216 1.03734 1.19694 0.94542 0.92626 0.86280 1.21122 1.16227 1.07409 1.09876 0.92005 1.24985 0.95608 0.98216 0.95766 1.69952 1.32135 1.37820 1.13959 0.86563 0.80944 0.82541 0.77370 1.20265 1.21357 1.20213 1.22057 0.96297 0.92539 0.96344 1.22143 0.99086 0.95909 0.89453 0.93583 0.91310 0.92908 0.93755 0.93949 0.77757 0.91016 0.95067 0.94466 0.90971 0.95333 0.89642 0.99069 0.95265 0.92884 0.95152 0.91081 0.91285 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.57 8.98 37.16 0.33 -1.24 16 2 C -0.09 -1.03 2.55 -90.62 -0.23 -1.26 16 3 H 0.08 1.03 6.28 -51.93 -0.33 0.70 16 4 C 0.08 0.75 6.43 37.16 0.24 0.99 16 5 O -0.57 -5.59 13.20 -35.23 -0.46 -6.06 16 6 C 0.06 0.74 4.35 -3.82 -0.02 0.73 16 7 N -0.54 -7.97 4.16 -234.48 -0.98 -8.95 16 8 C 0.06 0.90 5.42 -3.77 -0.02 0.88 16 9 C 0.07 1.37 5.43 -3.77 -0.02 1.35 16 10 N -0.54 -11.94 4.70 -235.91 -1.11 -13.05 16 11 C 0.19 5.15 4.72 -4.97 -0.02 5.13 16 12 C -0.51 -14.43 8.47 -34.44 -0.29 -14.72 16 13 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 14 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 16 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 21 C 0.06 0.95 5.61 -3.77 -0.02 0.93 16 22 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.07 0.93 7.75 -51.93 -0.40 0.53 16 24 H 0.05 0.64 7.82 -51.93 -0.41 0.23 16 25 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.04 0.36 8.14 -51.92 -0.42 -0.07 16 27 H 0.38 1.86 9.12 45.56 0.42 2.28 16 28 H 0.07 0.77 8.03 -51.93 -0.42 0.36 16 29 H 0.03 0.37 8.12 -51.93 -0.42 -0.06 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.08 6.25 -51.93 -0.32 0.75 16 32 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 1.84 6.79 -51.93 -0.35 1.49 16 34 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 35 H 0.03 0.83 8.03 -51.93 -0.42 0.41 16 36 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 1.29 8.07 -51.92 -0.42 0.87 16 39 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 314.09 15.07 4.73 4.73 Total: -1.00 -31.30 314.09 -8.65 -39.95 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.38 Total: -2.45 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -0.17 Total: -4.69 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: -1.35 Total: -48.28 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.46 Total: -6.06 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.30 -8.65 -39.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611236024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.856 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds