Wall clock time and date at job start Mon Mar 30 2020 05:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47158 * 2 1 4 4 C 1.52999 * 109.47157 * 240.00108 * 2 1 3 5 5 O 1.42903 * 109.47256 * 65.00201 * 4 2 1 6 6 C 1.52996 * 109.47324 * 120.00161 * 2 1 3 7 7 N 1.46903 * 109.47288 * 295.00215 * 6 2 1 8 8 C 1.46955 * 110.99695 * 293.80227 * 7 6 2 9 9 C 1.53051 * 109.36253 * 176.80959 * 8 7 6 10 10 N 1.46959 * 109.36577 * 58.39860 * 9 8 7 11 11 C 1.46904 * 110.99952 * 176.81182 * 10 9 8 12 12 C 1.50700 * 109.47151 * 293.79655 * 11 10 9 13 13 H 1.08001 * 119.99872 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00080 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99894 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00065 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47494 * 59.99856 * 16 14 12 18 18 H 1.48505 * 109.46991 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47133 * 299.99966 * 16 14 12 20 20 C 1.46953 * 110.87757 * 300.68083 * 10 9 8 21 21 C 1.46945 * 111.00165 * 169.99913 * 7 6 2 22 22 H 1.09001 * 109.46943 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47294 * 299.99780 * 1 2 3 24 24 H 1.08996 * 109.47473 * 60.00361 * 1 2 3 25 25 H 1.08997 * 109.47286 * 304.99761 * 4 2 1 26 26 H 1.09008 * 109.47201 * 184.99542 * 4 2 1 27 27 H 0.96700 * 114.00311 * 180.02562 * 5 4 2 28 28 H 1.08998 * 109.47199 * 54.99936 * 6 2 1 29 29 H 1.08997 * 109.47072 * 175.00220 * 6 2 1 30 30 H 1.09001 * 109.49030 * 296.77369 * 8 7 6 31 31 H 1.08994 * 109.49119 * 56.84175 * 8 7 6 32 32 H 1.08995 * 109.48885 * 298.43104 * 9 8 7 33 33 H 1.08999 * 109.50788 * 178.37534 * 9 8 7 34 34 H 1.08990 * 109.46916 * 53.79963 * 11 10 9 35 35 H 1.09000 * 109.46943 * 173.79732 * 11 10 9 36 36 H 0.97000 * 120.00061 * 179.97438 * 15 14 12 37 37 H 1.09004 * 109.48982 * 299.34726 * 20 10 9 38 38 H 1.09008 * 109.48925 * 179.29104 * 20 10 9 39 39 H 1.09001 * 109.49325 * 303.15320 * 21 7 6 40 40 H 1.09001 * 109.49310 * 63.21966 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 1.6620 0.0168 -2.4131 6 6 2.0400 -0.7213 1.2492 7 7 1.6514 0.0373 2.4456 8 6 2.3371 1.3363 2.4913 9 6 1.8465 2.1266 3.7068 10 7 2.1077 1.3531 4.9287 11 6 1.7191 2.1118 6.1251 12 6 2.6137 3.3160 6.2690 13 1 3.3927 3.4996 5.5439 14 6 2.4376 4.1832 7.3262 15 7 1.4892 3.9594 8.2094 16 14 3.5460 5.6762 7.5041 17 1 3.4086 6.5406 6.3044 18 1 3.1539 6.4424 8.7143 19 1 4.9570 5.2324 7.6354 20 6 1.4220 0.0542 4.8829 21 6 1.9126 -0.7361 3.6675 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.6054 -1.7198 -1.2952 26 1 3.1264 -0.7994 -1.2056 27 1 1.9526 -0.3832 -3.2441 28 1 1.6054 -1.7198 1.2951 29 1 3.1263 -0.7994 1.2055 30 1 3.4125 1.1773 2.5709 31 1 2.1181 1.8953 1.5816 32 1 0.7760 2.3092 3.6139 33 1 2.3747 3.0786 3.7592 34 1 0.6836 2.4379 6.0280 35 1 1.8192 1.4775 7.0059 36 1 1.3655 4.5693 8.9535 37 1 0.3466 0.2132 4.8035 38 1 1.6409 -0.5049 5.7928 39 1 1.3841 -1.6880 3.6153 40 1 2.9831 -0.9188 3.7604 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611236024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:34 Heat of formation + Delta-G solvation = -73.531493 kcal Electronic energy + Delta-G solvation = -18074.849371 eV Core-core repulsion = 15309.128070 eV Total energy + Delta-G solvation = -2765.721301 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36416 -38.43094 -36.80137 -34.90181 -33.69720 -31.83332 -29.92005 -27.65870 -27.03891 -24.87550 -24.53786 -23.17195 -20.96798 -20.51133 -18.49043 -18.28757 -17.29881 -16.59999 -16.34964 -15.84141 -15.72766 -15.59710 -15.25996 -15.13919 -14.36402 -14.26373 -13.85837 -13.51694 -13.40021 -13.14569 -12.94281 -12.69216 -12.50267 -12.30717 -12.19243 -12.05906 -11.96321 -11.78616 -11.51970 -11.29765 -11.16861 -10.80987 -10.62024 -9.28735 -9.03299 -8.21390 -6.32209 1.40519 1.44078 1.52033 2.39792 2.82082 3.10629 3.29601 3.52019 3.92107 3.97792 4.13068 4.20955 4.24438 4.37229 4.40560 4.48419 4.57700 4.62407 4.67017 4.72615 4.80982 4.87843 4.97071 4.99125 5.03352 5.08787 5.18324 5.21797 5.27277 5.38391 5.50228 5.62609 6.00762 6.08775 6.13206 6.34653 6.61988 6.83347 6.97196 7.37670 8.89822 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038359 B = 0.004609 C = 0.004327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.767427 B = 6073.038102 C = 6469.775044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 H 0.061 0.939 4 C 0.085 3.915 5 O -0.593 6.593 6 C 0.067 3.933 7 N -0.544 5.544 8 C 0.070 3.930 9 C 0.070 3.930 10 N -0.544 5.544 11 C 0.208 3.792 12 C -0.526 4.526 13 H 0.062 0.938 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.971 3.029 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.267 1.267 20 C 0.053 3.947 21 C 0.072 3.928 22 H 0.058 0.942 23 H 0.046 0.954 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.396 0.604 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.036 0.964 31 H 0.087 0.913 32 H 0.013 0.987 33 H 0.066 0.934 34 H -0.042 1.042 35 H 0.004 0.996 36 H 0.265 0.735 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.651 -11.506 -18.310 21.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.109 4.109 3 H 0.080 0.920 4 C 0.007 3.993 5 O -0.402 6.402 6 C -0.061 4.061 7 N -0.269 5.269 8 C -0.058 4.058 9 C -0.059 4.059 10 N -0.269 5.269 11 C 0.082 3.918 12 C -0.564 4.564 13 H 0.081 0.919 14 C -0.196 4.196 15 N -0.576 5.576 16 Si 0.795 3.205 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.075 4.075 21 C -0.056 4.056 22 H 0.077 0.923 23 H 0.065 0.935 24 H 0.065 0.935 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.246 0.754 28 H 0.110 0.890 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.106 0.894 32 H 0.031 0.969 33 H 0.084 0.916 34 H -0.024 1.024 35 H 0.023 0.977 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.119 0.881 40 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.311 -11.065 -17.701 20.916 hybrid contribution 0.406 0.608 0.355 0.812 sum 1.716 -10.457 -17.346 20.327 Atomic orbital electron populations 1.21552 0.94452 1.01648 1.00748 1.21107 0.97158 0.99830 0.92821 0.92049 1.22143 0.98370 0.94240 0.84592 1.86442 1.81972 1.54244 1.17500 1.22044 0.98288 0.97441 0.88302 1.62065 1.58337 1.03918 1.02620 1.22094 0.95887 0.90713 0.97126 1.21957 0.97578 0.96923 0.89426 1.62226 1.57620 1.04201 1.02862 1.19350 0.92513 0.92392 0.87530 1.21421 1.16507 1.08294 1.10174 0.91939 1.25937 0.97047 1.01453 0.95191 1.70086 1.33781 1.39149 1.14550 0.85410 0.78936 0.78419 0.77695 1.19207 1.20728 1.19229 1.22180 0.95537 0.91171 0.98647 1.22070 0.99374 0.96268 0.87875 0.92326 0.93470 0.93478 0.92027 0.92769 0.75387 0.89005 0.94155 0.94560 0.89449 0.96868 0.91557 1.02403 0.97749 0.92622 0.96218 0.91007 0.88129 0.94266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 8.98 71.98 0.65 -2.15 16 2 C -0.09 -1.85 2.55 -10.80 -0.03 -1.88 16 3 H 0.06 1.49 6.28 -2.39 -0.02 1.47 16 4 C 0.08 1.30 6.43 71.98 0.46 1.77 16 5 O -0.59 -10.13 13.20 -148.98 -1.97 -12.09 16 6 C 0.07 1.38 4.35 86.30 0.38 1.75 16 7 N -0.54 -15.20 4.16 -895.76 -3.73 -18.93 16 8 C 0.07 2.22 5.42 86.31 0.47 2.69 16 9 C 0.07 2.88 5.43 86.31 0.47 3.35 16 10 N -0.54 -24.72 4.70 -900.28 -4.23 -28.95 16 11 C 0.21 11.61 4.72 85.56 0.40 12.02 16 12 C -0.53 -30.65 8.47 25.60 0.22 -30.43 16 13 H 0.06 3.56 7.13 -2.91 -0.02 3.54 16 14 C 0.00 0.10 5.46 84.65 0.46 0.56 16 15 N -0.94 -57.50 13.29 21.45 0.28 -57.21 16 16 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 C 0.05 1.99 5.61 86.31 0.48 2.48 16 21 C 0.07 2.05 5.61 86.31 0.48 2.54 16 22 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 23 H 0.05 1.23 7.75 -2.39 -0.02 1.21 16 24 H 0.05 1.08 7.82 -2.39 -0.02 1.06 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.05 0.72 8.14 -2.38 -0.02 0.70 16 27 H 0.40 2.87 9.12 -74.06 -0.68 2.19 16 28 H 0.09 1.58 8.03 -2.39 -0.02 1.56 16 29 H 0.04 0.79 8.12 -2.39 -0.02 0.77 16 30 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 2.52 6.25 -2.39 -0.01 2.51 16 32 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.07 2.94 6.79 -2.39 -0.02 2.93 16 34 H -0.04 -2.54 8.12 -2.39 -0.02 -2.56 16 35 H 0.00 0.26 8.03 -2.39 -0.02 0.24 16 36 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 37 H 0.02 0.77 8.14 -2.39 -0.02 0.76 16 38 H 0.07 2.64 8.07 -2.38 -0.02 2.62 16 39 H 0.10 2.28 8.07 -2.39 -0.02 2.27 16 40 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -68.62 314.09 -2.85 -71.47 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: 0.32 Total: 6.05 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 4.44 Total: -7.31 kcal Atomic # 7 Polarization: -97.42 SS G_CDS: -7.68 Total: -105.09 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: -1.97 Total: -12.09 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -68.62 -2.85 -71.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611236024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.062 kcal (2) G-P(sol) polarization free energy of solvation -68.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds