Wall clock time and date at job start Mon Mar 30 2020 04:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00081 * 2 1 4 4 C 1.52998 * 109.47479 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46891 * 65.93983 * 4 3 2 6 6 C 1.46903 * 110.99961 * 158.28308 * 5 4 3 7 7 C 1.50702 * 109.47255 * 202.15595 * 6 5 4 8 8 H 1.07994 * 119.99570 * 0.59556 * 7 6 5 9 9 C 1.37871 * 120.00000 * 180.60129 * 7 6 5 10 10 N 1.31513 * 120.00424 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47019 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46963 * 119.99856 * 11 9 7 14 14 H 1.48496 * 109.47538 * 239.99807 * 11 9 7 15 15 C 1.46900 * 110.99802 * 282.23308 * 5 4 3 16 16 H 1.08997 * 109.46928 * 58.06777 * 15 5 4 17 17 C 1.53008 * 109.46760 * 178.06621 * 15 5 4 18 18 C 1.53000 * 109.47442 * 298.06114 * 15 5 4 19 19 C 1.53936 * 113.73693 * 269.83091 * 18 15 5 20 20 N 1.47962 * 86.18036 * 221.92227 * 19 18 15 21 21 C 1.47963 * 90.76244 * 24.68875 * 20 19 18 22 22 H 1.08996 * 109.47266 * 300.00386 * 1 2 3 23 23 H 1.09001 * 109.46576 * 60.00385 * 1 2 3 24 24 H 1.08999 * 109.46859 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47265 * 59.99677 * 3 2 1 26 26 H 1.08997 * 109.47578 * 299.99801 * 3 2 1 27 27 H 1.09002 * 109.47470 * 305.94635 * 4 3 2 28 28 H 1.09001 * 109.47967 * 185.94255 * 4 3 2 29 29 H 1.09007 * 109.46947 * 322.15484 * 6 5 4 30 30 H 1.08996 * 109.47156 * 82.15221 * 6 5 4 31 31 H 0.96998 * 120.00421 * 179.97438 * 10 9 7 32 32 H 1.08997 * 109.47162 * 62.16183 * 17 15 5 33 33 H 1.09001 * 109.46589 * 302.15783 * 17 15 5 34 34 H 1.08999 * 109.46943 * 182.16285 * 17 15 5 35 35 H 1.09005 * 112.93564 * 41.53850 * 18 15 5 36 36 H 1.08998 * 113.75560 * 336.23461 * 19 18 15 37 37 H 1.09000 * 113.76062 * 107.60306 * 19 18 15 38 38 H 1.00900 * 110.99809 * 271.79878 * 20 19 18 39 39 H 1.09003 * 113.75971 * 220.99494 * 21 20 19 40 40 H 1.08998 * 113.76333 * 89.63246 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9795 0.5829 -1.2638 6 6 5.3863 0.9070 -1.5356 7 6 5.6572 0.7700 -3.0117 8 1 4.8614 0.4813 -3.6822 9 6 6.9211 1.0130 -3.5061 10 7 7.8902 1.3650 -2.6897 11 14 7.2570 0.8425 -5.3357 12 1 6.0093 0.4391 -6.0326 13 1 7.7267 2.1435 -5.8761 14 1 8.3020 -0.1900 -5.5531 15 6 3.7656 -0.8704 -1.2588 16 1 2.7096 -1.0817 -1.0908 17 6 4.1943 -1.4536 -2.6069 18 6 4.5966 -1.5045 -0.1415 19 6 6.0094 -1.9267 -0.5834 20 7 5.7834 -3.1547 0.2105 21 6 4.3189 -3.0048 0.0620 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8464 -0.8900 27 1 3.8497 0.5548 0.8328 28 1 3.9784 2.1749 0.1070 29 1 5.5903 1.9309 -1.2223 30 1 6.0301 0.2228 -0.9830 31 1 8.7794 1.5356 -3.0374 32 1 5.2590 -1.2759 -2.7575 33 1 3.6291 -0.9743 -3.4062 34 1 3.9998 -2.5261 -2.6171 35 1 4.5786 -0.9257 0.7820 36 1 6.0990 -2.1068 -1.6547 37 1 6.8014 -1.2892 -0.1904 38 1 6.0650 -3.0216 1.1703 39 1 3.7601 -3.2287 0.9707 40 1 3.9140 -3.5002 -0.8205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686264038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:01 Heat of formation + Delta-G solvation = 12.118110 kcal Electronic energy + Delta-G solvation = -19205.643493 eV Core-core repulsion = 16443.636237 eV Total energy + Delta-G solvation = -2762.007256 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.83423 -37.72836 -35.94098 -32.58102 -31.01697 -28.80018 -26.90682 -25.83514 -25.46445 -25.39953 -22.47457 -21.83313 -20.20768 -18.03174 -16.45392 -16.31981 -16.08491 -15.91811 -14.84552 -14.53000 -14.50776 -14.11671 -13.54741 -13.20369 -12.52548 -12.28279 -12.13649 -11.89943 -11.62733 -11.36786 -11.18076 -11.11018 -10.90868 -10.67989 -10.58444 -10.53581 -10.26436 -10.12523 -9.85126 -9.54494 -9.07836 -8.98759 -8.33212 -8.08766 -6.98263 -5.96887 -3.92910 3.33671 3.42137 3.46463 4.06802 4.46101 4.56433 4.89913 5.17829 5.31120 5.34257 5.37165 5.44722 5.63323 5.66710 5.72549 5.73690 5.87094 5.98042 6.05426 6.18034 6.22306 6.31257 6.36695 6.49181 6.57200 6.63226 6.74493 6.89420 7.12239 7.27266 7.42110 7.48557 7.58958 7.76598 7.92075 8.20979 8.34296 8.63774 9.12253 9.66479 11.13203 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.008712 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.302732 B = 3213.133468 C = 3899.575696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.069 3.931 4 C 0.050 3.950 5 N -0.527 5.527 6 C 0.179 3.821 7 C -0.492 4.492 8 H 0.070 0.930 9 C 0.052 3.948 10 N -0.900 5.900 11 Si 0.889 3.111 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.286 1.286 15 C 0.100 3.900 16 H 0.087 0.913 17 C -0.150 4.150 18 C -0.180 4.180 19 C 0.027 3.973 20 N -0.670 5.670 21 C 0.024 3.976 22 H 0.033 0.967 23 H 0.038 0.962 24 H 0.079 0.921 25 H 0.039 0.961 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.018 0.982 30 H 0.012 0.988 31 H 0.258 0.742 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.029 0.971 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.069 0.931 38 H 0.325 0.675 39 H 0.059 0.941 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.446 -3.492 6.510 12.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.299 6.299 3 C -0.008 4.008 4 C -0.079 4.079 5 N -0.250 5.250 6 C 0.054 3.946 7 C -0.531 4.531 8 H 0.088 0.912 9 C -0.149 4.149 10 N -0.540 5.540 11 Si 0.717 3.283 12 H -0.197 1.197 13 H -0.213 1.213 14 H -0.212 1.212 15 C -0.009 4.009 16 H 0.105 0.895 17 C -0.207 4.207 18 C -0.201 4.201 19 C -0.101 4.101 20 N -0.296 5.296 21 C -0.106 4.106 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.037 0.963 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.118 0.882 33 H 0.071 0.929 34 H 0.048 0.952 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.087 0.913 38 H 0.138 0.862 39 H 0.077 0.923 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -10.174 -4.066 5.631 12.319 hybrid contribution 0.258 0.893 0.378 1.003 sum -9.916 -3.174 6.009 12.021 Atomic orbital electron populations 1.22663 0.82506 1.02045 0.99388 1.87959 1.18460 1.28403 1.95124 1.22678 0.94561 0.84271 0.99260 1.22189 0.92510 0.99942 0.93290 1.62329 1.24673 1.09390 1.28629 1.19985 0.81637 0.95834 0.97123 1.21370 0.94803 1.44221 0.92720 0.91230 1.24958 0.96423 0.95963 0.97513 1.69957 1.01798 1.47949 1.34330 0.86576 0.78256 0.77552 0.85913 1.19654 1.21276 1.21189 1.21648 0.98666 0.87142 0.93440 0.89491 1.22363 1.05446 0.96658 0.96191 1.24716 0.98051 0.96591 1.00747 1.23972 0.95798 0.89302 1.01072 1.65163 1.09689 1.40363 1.14341 1.23582 0.90768 0.95027 1.01232 0.94876 0.94346 0.90270 0.94301 0.92653 0.94675 0.90305 0.96346 0.97048 0.93192 0.88166 0.92928 0.95225 0.90198 0.86861 0.91299 0.86236 0.92262 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.46 16 2 O -0.38 -5.80 7.91 -35.23 -0.28 -6.08 16 3 C 0.07 1.04 6.26 37.16 0.23 1.28 16 4 C 0.05 0.88 5.43 -3.82 -0.02 0.86 16 5 N -0.53 -10.95 4.43 -228.07 -1.01 -11.96 16 6 C 0.18 4.39 4.33 -4.97 -0.02 4.37 16 7 C -0.49 -13.07 6.47 -34.44 -0.22 -13.29 16 8 H 0.07 1.86 5.91 -52.49 -0.31 1.55 16 9 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 10 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 11 Si 0.89 21.36 29.54 -169.99 -5.02 16.33 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.10 1.91 2.37 -67.71 -0.16 1.75 16 16 H 0.09 1.64 5.45 -51.93 -0.28 1.36 16 17 C -0.15 -3.00 6.63 37.16 0.25 -2.75 16 18 C -0.18 -3.19 3.11 -89.69 -0.28 -3.46 16 19 C 0.03 0.52 6.26 -2.76 -0.02 0.50 16 20 N -0.67 -11.21 8.56 -117.01 -1.00 -12.21 16 21 C 0.02 0.38 8.30 -2.77 -0.02 0.36 16 22 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 23 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.04 0.62 5.59 -51.93 -0.29 0.33 16 28 H 0.08 1.38 7.53 -51.93 -0.39 0.99 16 29 H 0.02 0.50 7.52 -51.92 -0.39 0.10 16 30 H 0.01 0.30 4.36 -51.93 -0.23 0.07 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.10 2.27 3.47 -51.93 -0.18 2.09 16 33 H 0.05 1.09 7.25 -51.93 -0.38 0.71 16 34 H 0.03 0.52 6.93 -51.93 -0.36 0.16 16 35 H 0.08 1.44 5.87 -51.93 -0.30 1.13 16 36 H 0.11 2.39 5.32 -51.93 -0.28 2.12 16 37 H 0.07 1.42 7.31 -51.93 -0.38 1.04 16 38 H 0.32 4.87 8.89 -39.29 -0.35 4.52 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.09 1.47 6.90 -51.93 -0.36 1.11 16 LS Contribution 296.14 15.07 4.46 4.46 Total: -1.00 -28.44 296.14 -7.51 -35.95 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -6.15 Total: 6.28 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 0.75 Total: -7.60 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -1.27 Total: -49.35 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.28 Total: -6.08 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.44 -7.51 -35.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686264038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.071 kcal (2) G-P(sol) polarization free energy of solvation -28.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds