Wall clock time and date at job start Mon Mar 30 2020 04:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00081 * 2 1 4 4 C 1.52998 * 109.47479 * 179.97438 * 3 2 1 5 5 N 1.46905 * 109.46891 * 65.93983 * 4 3 2 6 6 C 1.46903 * 110.99961 * 158.28308 * 5 4 3 7 7 C 1.50702 * 109.47255 * 202.15595 * 6 5 4 8 8 H 1.07994 * 119.99570 * 0.59556 * 7 6 5 9 9 C 1.37871 * 120.00000 * 180.60129 * 7 6 5 10 10 N 1.31513 * 120.00424 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99856 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47019 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.46963 * 119.99856 * 11 9 7 14 14 H 1.48496 * 109.47538 * 239.99807 * 11 9 7 15 15 C 1.46900 * 110.99802 * 282.23308 * 5 4 3 16 16 H 1.08997 * 109.46928 * 58.06777 * 15 5 4 17 17 C 1.53008 * 109.46760 * 178.06621 * 15 5 4 18 18 C 1.53000 * 109.47442 * 298.06114 * 15 5 4 19 19 C 1.53936 * 113.73693 * 269.83091 * 18 15 5 20 20 N 1.47962 * 86.18036 * 221.92227 * 19 18 15 21 21 C 1.47963 * 90.76244 * 24.68875 * 20 19 18 22 22 H 1.08996 * 109.47266 * 300.00386 * 1 2 3 23 23 H 1.09001 * 109.46576 * 60.00385 * 1 2 3 24 24 H 1.08999 * 109.46859 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47265 * 59.99677 * 3 2 1 26 26 H 1.08997 * 109.47578 * 299.99801 * 3 2 1 27 27 H 1.09002 * 109.47470 * 305.94635 * 4 3 2 28 28 H 1.09001 * 109.47967 * 185.94255 * 4 3 2 29 29 H 1.09007 * 109.46947 * 322.15484 * 6 5 4 30 30 H 1.08996 * 109.47156 * 82.15221 * 6 5 4 31 31 H 0.96998 * 120.00421 * 179.97438 * 10 9 7 32 32 H 1.08997 * 109.47162 * 62.16183 * 17 15 5 33 33 H 1.09001 * 109.46589 * 302.15783 * 17 15 5 34 34 H 1.08999 * 109.46943 * 182.16285 * 17 15 5 35 35 H 1.09005 * 112.93564 * 41.53850 * 18 15 5 36 36 H 1.08998 * 113.75560 * 336.23461 * 19 18 15 37 37 H 1.09000 * 113.76062 * 107.60306 * 19 18 15 38 38 H 1.00900 * 110.99809 * 271.79878 * 20 19 18 39 39 H 1.09003 * 113.75971 * 220.99494 * 21 20 19 40 40 H 1.08998 * 113.76333 * 89.63246 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9795 0.5829 -1.2638 6 6 5.3863 0.9070 -1.5356 7 6 5.6572 0.7700 -3.0117 8 1 4.8614 0.4813 -3.6822 9 6 6.9211 1.0130 -3.5061 10 7 7.8902 1.3650 -2.6897 11 14 7.2570 0.8425 -5.3357 12 1 6.0093 0.4391 -6.0326 13 1 7.7267 2.1435 -5.8761 14 1 8.3020 -0.1900 -5.5531 15 6 3.7656 -0.8704 -1.2588 16 1 2.7096 -1.0817 -1.0908 17 6 4.1943 -1.4536 -2.6069 18 6 4.5966 -1.5045 -0.1415 19 6 6.0094 -1.9267 -0.5834 20 7 5.7834 -3.1547 0.2105 21 6 4.3189 -3.0048 0.0620 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.6886 1.8464 0.8899 26 1 1.6887 1.8464 -0.8900 27 1 3.8497 0.5548 0.8328 28 1 3.9784 2.1749 0.1070 29 1 5.5903 1.9309 -1.2223 30 1 6.0301 0.2228 -0.9830 31 1 8.7794 1.5356 -3.0374 32 1 5.2590 -1.2759 -2.7575 33 1 3.6291 -0.9743 -3.4062 34 1 3.9998 -2.5261 -2.6171 35 1 4.5786 -0.9257 0.7820 36 1 6.0990 -2.1068 -1.6547 37 1 6.8014 -1.2892 -0.1904 38 1 6.0650 -3.0216 1.1703 39 1 3.7601 -3.2287 0.9707 40 1 3.9140 -3.5002 -0.8205 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686264038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:01 Heat of formation + Delta-G solvation = -9.918988 kcal Electronic energy + Delta-G solvation = -19206.599093 eV Core-core repulsion = 16443.636237 eV Total energy + Delta-G solvation = -2762.962856 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.31767 -38.92520 -37.43967 -34.60577 -32.48593 -30.47751 -28.46125 -27.14113 -26.86081 -26.80979 -24.32270 -23.21617 -21.77336 -19.56155 -18.42073 -17.74372 -17.31608 -17.19751 -16.47627 -16.17979 -15.91846 -15.43283 -15.10327 -14.57442 -14.37210 -13.77959 -13.48388 -13.38743 -13.08236 -12.92497 -12.76316 -12.73057 -12.55260 -12.33203 -12.19644 -12.00228 -11.88992 -11.72378 -11.49815 -11.05432 -10.92845 -10.45278 -10.33605 -9.52530 -8.62295 -8.07100 -6.08923 1.41435 1.44322 1.55279 2.46427 2.99279 3.16217 3.24981 3.39817 3.72158 3.90405 4.24980 4.29640 4.41896 4.51981 4.56650 4.61922 4.64514 4.65689 4.76395 4.81040 4.83279 4.90086 4.93851 5.07608 5.08475 5.13002 5.16953 5.31145 5.35321 5.51166 5.62636 5.82256 5.89114 6.24416 6.36668 6.45320 6.61473 6.80779 7.03092 7.54062 9.02101 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.020716 B = 0.008712 C = 0.007179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.302732 B = 3213.133468 C = 3899.575696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.402 6.402 3 C 0.079 3.921 4 C 0.047 3.953 5 N -0.537 5.537 6 C 0.194 3.806 7 C -0.490 4.490 8 H 0.066 0.934 9 C 0.002 3.998 10 N -0.935 5.935 11 Si 0.948 3.052 12 H -0.265 1.265 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.104 3.896 16 H 0.100 0.900 17 C -0.143 4.143 18 C -0.174 4.174 19 C 0.026 3.974 20 N -0.668 5.668 21 C 0.038 3.962 22 H 0.050 0.950 23 H 0.040 0.960 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.048 0.952 27 H 0.039 0.961 28 H 0.072 0.928 29 H -0.013 1.013 30 H 0.001 0.999 31 H 0.258 0.742 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.337 0.663 39 H 0.086 0.914 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.331 -4.517 6.951 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.322 6.322 3 C 0.002 3.998 4 C -0.082 4.082 5 N -0.260 5.260 6 C 0.067 3.933 7 C -0.529 4.529 8 H 0.084 0.916 9 C -0.195 4.195 10 N -0.577 5.577 11 Si 0.775 3.225 12 H -0.189 1.189 13 H -0.212 1.212 14 H -0.210 1.210 15 C -0.005 4.005 16 H 0.117 0.883 17 C -0.200 4.200 18 C -0.194 4.194 19 C -0.103 4.103 20 N -0.295 5.295 21 C -0.093 4.093 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.112 0.888 25 H 0.086 0.914 26 H 0.066 0.934 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.006 0.994 30 H 0.019 0.981 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.151 0.849 39 H 0.105 0.895 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.089 -5.099 6.082 14.462 hybrid contribution 0.777 1.187 0.294 1.449 sum -11.313 -3.912 6.376 13.562 Atomic orbital electron populations 1.22859 0.80334 1.03423 1.00356 1.87879 1.20751 1.28223 1.95320 1.22501 0.92332 0.84699 1.00296 1.22263 0.94734 0.99360 0.91827 1.62265 1.21938 1.10918 1.30908 1.19663 0.83962 0.93660 0.95966 1.21590 0.94579 1.42998 0.93713 0.91635 1.25671 0.96417 0.96031 1.01357 1.70071 1.02112 1.49437 1.36051 0.85642 0.78194 0.77367 0.81345 1.18879 1.21158 1.20983 1.21652 0.99425 0.86049 0.93336 0.88286 1.22229 1.03208 0.98087 0.96470 1.24649 0.96633 0.98153 1.00005 1.23730 0.96132 0.90357 1.00090 1.65111 1.10716 1.38743 1.14949 1.23590 0.90216 0.92762 1.02697 0.93110 0.94147 0.88763 0.91425 0.93393 0.94332 0.90939 0.99442 0.98094 0.93303 0.91021 0.94149 0.93003 0.90233 0.88965 0.93798 0.84904 0.89517 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 113.37 1.25 1.76 16 2 O -0.40 -11.16 7.91 -148.98 -1.18 -12.34 16 3 C 0.08 2.21 6.26 71.98 0.45 2.66 16 4 C 0.05 1.61 5.43 86.30 0.47 2.08 16 5 N -0.54 -22.33 4.43 -875.48 -3.87 -26.20 16 6 C 0.19 9.77 4.33 85.56 0.37 10.14 16 7 C -0.49 -26.55 6.47 25.60 0.17 -26.39 16 8 H 0.07 3.55 5.91 -2.91 -0.02 3.53 16 9 C 0.00 0.12 5.46 84.65 0.46 0.58 16 10 N -0.93 -55.28 13.29 21.45 0.28 -54.99 16 11 Si 0.95 44.41 29.54 68.60 2.03 46.44 16 12 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 14 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 15 C 0.10 3.87 2.37 44.92 0.11 3.97 16 16 H 0.10 3.51 5.45 -2.39 -0.01 3.50 16 17 C -0.14 -5.66 6.63 71.98 0.48 -5.18 16 18 C -0.17 -5.94 3.11 -10.15 -0.03 -5.97 16 19 C 0.03 1.01 6.26 86.41 0.54 1.55 16 20 N -0.67 -21.35 8.56 -524.12 -4.48 -25.84 16 21 C 0.04 1.07 8.30 86.41 0.72 1.79 16 22 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.31 5.59 -2.39 -0.01 1.30 16 28 H 0.07 2.57 7.53 -2.39 -0.02 2.55 16 29 H -0.01 -0.70 7.52 -2.38 -0.02 -0.72 16 30 H 0.00 0.07 4.36 -2.39 -0.01 0.06 16 31 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 32 H 0.07 3.29 3.47 -2.39 -0.01 3.28 16 33 H 0.04 1.65 7.25 -2.39 -0.02 1.64 16 34 H 0.05 1.77 6.93 -2.39 -0.02 1.76 16 35 H 0.08 2.76 5.87 -2.38 -0.01 2.74 16 36 H 0.09 3.98 5.32 -2.39 -0.01 3.97 16 37 H 0.04 1.88 7.31 -2.39 -0.02 1.87 16 38 H 0.34 9.50 8.89 -89.69 -0.80 8.71 16 39 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.10 2.74 6.90 -2.39 -0.02 2.73 16 Total: -1.00 -61.36 296.14 -2.00 -63.37 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.24 Total: 22.55 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 4.98 Total: -12.99 kcal Atomic # 7 Polarization: -98.95 SS G_CDS: -8.07 Total: -107.03 kcal Atomic # 8 Polarization: -11.16 SS G_CDS: -1.18 Total: -12.34 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -61.36 -2.00 -63.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686264038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.448 kcal (2) G-P(sol) polarization free energy of solvation -61.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds