Wall clock time and date at job start Mon Mar 30 2020 04:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42890 * 114.00123 * 2 1 4 4 C 1.52998 * 109.47666 * 184.95833 * 3 2 1 5 5 N 1.46903 * 109.46846 * 64.47406 * 4 3 2 6 6 C 1.46900 * 110.99685 * 76.14914 * 5 4 3 7 7 C 1.50699 * 109.47034 * 189.99657 * 6 5 4 8 8 H 1.08004 * 120.00084 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00253 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99804 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00201 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47116 * 90.00518 * 11 9 7 13 13 H 1.48501 * 109.47353 * 210.00243 * 11 9 7 14 14 H 1.48499 * 109.47496 * 330.00352 * 11 9 7 15 15 C 1.46899 * 111.00172 * 200.10405 * 5 4 3 16 16 H 1.09001 * 109.47228 * 190.25958 * 15 5 4 17 17 C 1.53000 * 109.47079 * 70.25367 * 15 5 4 18 18 C 1.53005 * 109.46921 * 310.25456 * 15 5 4 19 19 C 1.53933 * 113.73615 * 271.65279 * 18 15 5 20 20 N 1.48185 * 86.10020 * 221.95529 * 19 18 15 21 21 C 1.47961 * 90.80140 * 24.60037 * 20 19 18 22 22 H 1.08996 * 109.47168 * 60.00016 * 1 2 3 23 23 H 1.09012 * 109.47197 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47004 * 299.99313 * 1 2 3 25 25 H 1.09005 * 109.46952 * 64.95735 * 3 2 1 26 26 H 1.09001 * 109.47374 * 304.96395 * 3 2 1 27 27 H 1.08991 * 109.47481 * 184.47557 * 4 3 2 28 28 H 1.09001 * 109.46881 * 304.48239 * 4 3 2 29 29 H 1.08994 * 109.47223 * 309.99690 * 6 5 4 30 30 H 1.09004 * 109.47001 * 70.00036 * 6 5 4 31 31 H 0.97001 * 120.00091 * 179.97438 * 10 9 7 32 32 H 1.08995 * 109.46940 * 63.98140 * 17 15 5 33 33 H 1.09003 * 109.46520 * 183.97754 * 17 15 5 34 34 H 1.08997 * 109.47072 * 303.97648 * 17 15 5 35 35 H 1.09004 * 112.94024 * 43.21947 * 18 15 5 36 36 H 1.09002 * 113.75765 * 336.23849 * 19 18 15 37 37 H 1.09004 * 113.76109 * 107.60517 * 19 18 15 38 38 H 1.00908 * 111.07257 * 137.51731 * 20 19 18 39 39 H 1.09002 * 113.75868 * 221.08346 * 21 20 19 40 40 H 1.08997 * 113.85911 * 89.72641 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1869 -0.1247 5 7 3.8705 0.5982 -1.4269 6 6 3.7241 1.5852 -2.5051 7 6 3.8395 0.8930 -3.8387 8 1 4.0046 -0.1735 -3.8812 9 6 3.7331 1.6211 -5.0048 10 7 3.5315 2.9196 -4.9532 11 14 3.8754 0.7630 -6.6579 12 1 2.5296 0.3213 -7.1038 13 1 4.4436 1.7037 -7.6567 14 1 4.7661 -0.4180 -6.5277 15 6 5.2263 0.0329 -1.4113 16 1 5.5218 -0.2307 -2.4268 17 6 5.2465 -1.2196 -0.5328 18 6 6.2035 1.0668 -0.8479 19 6 6.7910 2.0092 -1.9138 20 7 8.0836 1.8339 -1.2108 21 6 7.6358 0.5321 -0.6684 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0278 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.7606 1.8142 0.9311 26 1 1.6200 1.8769 -0.8422 27 1 3.9799 2.1766 -0.0449 28 1 3.9118 0.5492 0.6729 29 1 2.7486 2.0653 -2.4281 30 1 4.5076 2.3379 -2.4174 31 1 3.4571 3.4319 -5.7735 32 1 4.6042 -1.9824 -0.9728 33 1 6.2662 -1.5987 -0.4640 34 1 4.8836 -0.9700 0.4642 35 1 5.8153 1.5844 0.0293 36 1 6.7793 1.5940 -2.9216 37 1 6.3983 3.0250 -1.8665 38 1 8.8400 1.7111 -1.8674 39 1 7.9168 0.3699 0.3722 40 1 7.8711 -0.3171 -1.3098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000686264040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:04 Heat of formation + Delta-G solvation = -7.556870 kcal Electronic energy + Delta-G solvation = -18869.034678 eV Core-core repulsion = 16106.174251 eV Total energy + Delta-G solvation = -2762.860427 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.60565 -37.52493 -35.98138 -32.69178 -31.01554 -29.10068 -26.48164 -26.38780 -25.54380 -25.19563 -22.55758 -21.99687 -19.81831 -18.51734 -16.64767 -16.03668 -15.87292 -15.48674 -15.10009 -14.67660 -14.32870 -13.93785 -13.70460 -13.22062 -12.69892 -12.42128 -12.13808 -12.01045 -11.85920 -11.59915 -11.31956 -11.15263 -11.01656 -10.72116 -10.67620 -10.43141 -10.25106 -10.12298 -9.90156 -9.60766 -9.14155 -9.08847 -8.62492 -8.40483 -7.04428 -6.01555 -4.01294 3.31116 3.37760 3.40638 4.30115 4.42583 4.49450 4.85219 5.06454 5.19357 5.34042 5.52314 5.62645 5.68851 5.75386 5.80249 5.83318 5.84726 5.92819 5.96381 6.02265 6.13666 6.19445 6.22348 6.23431 6.38925 6.43682 6.44811 6.60151 6.80776 6.93522 7.33585 7.43919 7.57001 7.67536 7.85251 8.15666 8.29894 8.61593 9.06828 9.62252 11.09015 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.010966 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.590047 B = 2552.825737 C = 4011.465497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.070 3.930 4 C 0.053 3.947 5 N -0.518 5.518 6 C 0.187 3.813 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.056 3.944 10 N -0.898 5.898 11 Si 0.892 3.108 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.095 3.905 16 H 0.092 0.908 17 C -0.138 4.138 18 C -0.142 4.142 19 C 0.023 3.977 20 N -0.646 5.646 21 C 0.012 3.988 22 H 0.039 0.961 23 H 0.078 0.922 24 H 0.029 0.971 25 H 0.037 0.963 26 H 0.054 0.946 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.026 0.974 30 H 0.002 0.998 31 H 0.260 0.740 32 H 0.058 0.942 33 H 0.046 0.954 34 H 0.049 0.951 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.310 0.690 39 H 0.077 0.923 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -4.007 9.158 10.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.007 4.007 4 C -0.075 4.075 5 N -0.241 5.241 6 C 0.062 3.938 7 C -0.539 4.539 8 H 0.079 0.921 9 C -0.145 4.145 10 N -0.538 5.538 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.200 1.200 15 C -0.015 4.015 16 H 0.110 0.890 17 C -0.195 4.195 18 C -0.162 4.162 19 C -0.107 4.107 20 N -0.271 5.271 21 C -0.119 4.119 22 H 0.058 0.942 23 H 0.097 0.903 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.019 0.981 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.549 -3.831 9.593 10.446 hybrid contribution 0.297 0.025 -1.645 1.671 sum 1.846 -3.807 7.949 9.004 Atomic orbital electron populations 1.22643 0.82582 1.01916 0.99246 1.87962 1.18164 1.27760 1.95138 1.22579 0.94553 0.84754 0.98853 1.22072 0.93282 0.97883 0.94293 1.62228 1.23070 1.36401 1.02394 1.19849 0.96356 0.89491 0.88118 1.21142 1.48186 0.94575 0.89985 0.92083 1.24942 0.95708 0.94782 0.99046 1.69950 1.50283 1.05771 1.27795 0.86599 0.78298 0.79266 0.83842 1.20728 1.21449 1.19961 1.21704 0.87524 0.92536 0.99729 0.89044 1.21810 1.00084 0.97992 0.99653 1.23724 0.95065 0.98118 0.99304 1.23764 0.89088 1.00892 0.96954 1.66965 1.05243 1.25134 1.29725 1.23637 0.95612 0.92080 1.00590 0.94227 0.90346 0.95223 0.94512 0.92791 0.94168 0.91225 0.95645 0.98076 0.93064 0.92251 0.93522 0.93234 0.89202 0.90451 0.89965 0.87834 0.90472 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.59 16 2 O -0.37 -6.76 10.64 -35.23 -0.37 -7.13 16 3 C 0.07 1.21 6.13 37.16 0.23 1.44 16 4 C 0.05 0.96 3.89 -3.82 -0.01 0.95 16 5 N -0.52 -10.81 4.28 -228.08 -0.98 -11.79 16 6 C 0.19 4.63 4.36 -4.98 -0.02 4.61 16 7 C -0.50 -13.55 8.31 -34.44 -0.29 -13.84 16 8 H 0.06 1.67 7.23 -52.48 -0.38 1.29 16 9 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 10 N -0.90 -25.97 13.29 55.43 0.74 -25.23 16 11 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.09 1.75 2.13 -67.71 -0.14 1.61 16 16 H 0.09 1.92 6.29 -51.93 -0.33 1.59 16 17 C -0.14 -2.18 9.11 37.16 0.34 -1.84 16 18 C -0.14 -2.39 2.87 -89.69 -0.26 -2.65 16 19 C 0.02 0.41 6.70 -2.64 -0.02 0.39 16 20 N -0.65 -10.20 8.53 -116.85 -1.00 -11.20 16 21 C 0.01 0.17 7.35 -2.76 -0.02 0.15 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 24 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 1.04 6.69 -51.93 -0.35 0.69 16 27 H 0.04 0.72 7.03 -51.93 -0.36 0.36 16 28 H 0.07 1.16 6.06 -51.93 -0.31 0.85 16 29 H 0.03 0.69 6.60 -51.93 -0.34 0.35 16 30 H 0.00 0.04 5.51 -51.93 -0.29 -0.25 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.63 6.97 -51.93 -0.36 0.27 16 34 H 0.05 0.76 6.34 -51.93 -0.33 0.43 16 35 H 0.09 1.54 6.12 -51.93 -0.32 1.22 16 36 H 0.08 1.54 7.89 -51.93 -0.41 1.13 16 37 H 0.08 1.63 7.69 -51.93 -0.40 1.23 16 38 H 0.31 4.38 8.92 -39.29 -0.35 4.03 16 39 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.87 7.80 -51.93 -0.40 0.46 16 LS Contribution 309.20 15.07 4.66 4.66 Total: -1.00 -29.17 309.20 -7.76 -36.93 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -6.61 Total: 3.53 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: 0.82 Total: -6.14 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -1.24 Total: -48.22 kcal Atomic # 8 Polarization: -6.76 SS G_CDS: -0.37 Total: -7.13 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.17 -7.76 -36.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686264040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.373 kcal (2) G-P(sol) polarization free energy of solvation -29.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds