Wall clock time and date at job start Mon Mar 30 2020 04:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42890 * 114.00123 * 2 1 4 4 C 1.52998 * 109.47666 * 184.95833 * 3 2 1 5 5 N 1.46903 * 109.46846 * 64.47406 * 4 3 2 6 6 C 1.46900 * 110.99685 * 76.14914 * 5 4 3 7 7 C 1.50699 * 109.47034 * 189.99657 * 6 5 4 8 8 H 1.08004 * 120.00084 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00253 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99804 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00201 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47116 * 90.00518 * 11 9 7 13 13 H 1.48501 * 109.47353 * 210.00243 * 11 9 7 14 14 H 1.48499 * 109.47496 * 330.00352 * 11 9 7 15 15 C 1.46899 * 111.00172 * 200.10405 * 5 4 3 16 16 H 1.09001 * 109.47228 * 190.25958 * 15 5 4 17 17 C 1.53000 * 109.47079 * 70.25367 * 15 5 4 18 18 C 1.53005 * 109.46921 * 310.25456 * 15 5 4 19 19 C 1.53933 * 113.73615 * 271.65279 * 18 15 5 20 20 N 1.48185 * 86.10020 * 221.95529 * 19 18 15 21 21 C 1.47961 * 90.80140 * 24.60037 * 20 19 18 22 22 H 1.08996 * 109.47168 * 60.00016 * 1 2 3 23 23 H 1.09012 * 109.47197 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47004 * 299.99313 * 1 2 3 25 25 H 1.09005 * 109.46952 * 64.95735 * 3 2 1 26 26 H 1.09001 * 109.47374 * 304.96395 * 3 2 1 27 27 H 1.08991 * 109.47481 * 184.47557 * 4 3 2 28 28 H 1.09001 * 109.46881 * 304.48239 * 4 3 2 29 29 H 1.08994 * 109.47223 * 309.99690 * 6 5 4 30 30 H 1.09004 * 109.47001 * 70.00036 * 6 5 4 31 31 H 0.97001 * 120.00091 * 179.97438 * 10 9 7 32 32 H 1.08995 * 109.46940 * 63.98140 * 17 15 5 33 33 H 1.09003 * 109.46520 * 183.97754 * 17 15 5 34 34 H 1.08997 * 109.47072 * 303.97648 * 17 15 5 35 35 H 1.09004 * 112.94024 * 43.21947 * 18 15 5 36 36 H 1.09002 * 113.75765 * 336.23849 * 19 18 15 37 37 H 1.09004 * 113.76109 * 107.60517 * 19 18 15 38 38 H 1.00908 * 111.07257 * 137.51731 * 20 19 18 39 39 H 1.09002 * 113.75868 * 221.08346 * 21 20 19 40 40 H 1.08997 * 113.85911 * 89.72641 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5305 1.1869 -0.1247 5 7 3.8705 0.5982 -1.4269 6 6 3.7241 1.5852 -2.5051 7 6 3.8395 0.8930 -3.8387 8 1 4.0046 -0.1735 -3.8812 9 6 3.7331 1.6211 -5.0048 10 7 3.5315 2.9196 -4.9532 11 14 3.8754 0.7630 -6.6579 12 1 2.5296 0.3213 -7.1038 13 1 4.4436 1.7037 -7.6567 14 1 4.7661 -0.4180 -6.5277 15 6 5.2263 0.0329 -1.4113 16 1 5.5218 -0.2307 -2.4268 17 6 5.2465 -1.2196 -0.5328 18 6 6.2035 1.0668 -0.8479 19 6 6.7910 2.0092 -1.9138 20 7 8.0836 1.8339 -1.2108 21 6 7.6358 0.5321 -0.6684 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3634 -1.0278 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 1.7606 1.8142 0.9311 26 1 1.6200 1.8769 -0.8422 27 1 3.9799 2.1766 -0.0449 28 1 3.9118 0.5492 0.6729 29 1 2.7486 2.0653 -2.4281 30 1 4.5076 2.3379 -2.4174 31 1 3.4571 3.4319 -5.7735 32 1 4.6042 -1.9824 -0.9728 33 1 6.2662 -1.5987 -0.4640 34 1 4.8836 -0.9700 0.4642 35 1 5.8153 1.5844 0.0293 36 1 6.7793 1.5940 -2.9216 37 1 6.3983 3.0250 -1.8665 38 1 8.8400 1.7111 -1.8674 39 1 7.9168 0.3699 0.3722 40 1 7.8711 -0.3171 -1.3098 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000686264040.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:04 Heat of formation + Delta-G solvation = -30.483703 kcal Electronic energy + Delta-G solvation = -18870.028861 eV Core-core repulsion = 16106.174251 eV Total energy + Delta-G solvation = -2763.854609 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02395 -38.89678 -37.48079 -34.76191 -32.45124 -30.78958 -28.04597 -27.82085 -26.89348 -26.56840 -24.42752 -23.44611 -21.34955 -19.95457 -18.54933 -17.44730 -17.28115 -17.08887 -16.67014 -16.27536 -15.75181 -15.44350 -15.16906 -14.73158 -14.27692 -13.91621 -13.73276 -13.51085 -13.34167 -13.09351 -12.82741 -12.67076 -12.55177 -12.43023 -12.38075 -11.99201 -11.77467 -11.60544 -11.50571 -11.19408 -11.05886 -10.56549 -10.41864 -9.94535 -8.71116 -8.15083 -6.21937 1.39043 1.40313 1.50199 2.41267 3.01832 3.14034 3.19299 3.38380 3.65708 3.83165 4.21872 4.32342 4.40715 4.45183 4.47287 4.56855 4.59290 4.62802 4.67019 4.74155 4.77144 4.86499 4.89175 4.91955 4.94404 5.03961 5.09960 5.22726 5.29796 5.40218 5.50532 5.56767 5.72439 6.16157 6.32832 6.38916 6.53869 6.79855 6.95285 7.46277 8.95007 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.013207 B = 0.010966 C = 0.006978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.590047 B = 2552.825737 C = 4011.465497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.396 6.396 3 C 0.072 3.928 4 C 0.054 3.946 5 N -0.529 5.529 6 C 0.206 3.794 7 C -0.508 4.508 8 H 0.054 0.946 9 C 0.007 3.993 10 N -0.931 5.931 11 Si 0.954 3.046 12 H -0.278 1.278 13 H -0.284 1.284 14 H -0.266 1.266 15 C 0.095 3.905 16 H 0.062 0.938 17 C -0.127 4.127 18 C -0.137 4.137 19 C 0.020 3.980 20 N -0.644 5.644 21 C 0.025 3.975 22 H 0.027 0.973 23 H 0.096 0.904 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.025 0.975 27 H 0.039 0.961 28 H 0.091 0.909 29 H -0.007 1.007 30 H -0.014 1.014 31 H 0.261 0.739 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.053 0.947 37 H 0.057 0.943 38 H 0.322 0.678 39 H 0.101 0.899 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.567 -5.496 10.412 12.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.315 6.315 3 C -0.005 4.005 4 C -0.074 4.074 5 N -0.252 5.252 6 C 0.080 3.920 7 C -0.547 4.547 8 H 0.072 0.928 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.780 3.220 12 H -0.204 1.204 13 H -0.210 1.210 14 H -0.190 1.190 15 C -0.015 4.015 16 H 0.080 0.920 17 C -0.185 4.185 18 C -0.158 4.158 19 C -0.110 4.110 20 N -0.269 5.269 21 C -0.105 4.105 22 H 0.046 0.954 23 H 0.114 0.886 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.109 0.891 29 H 0.012 0.988 30 H 0.004 0.996 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.119 0.881 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.332 -5.339 10.864 12.327 hybrid contribution 0.033 0.488 -1.989 2.048 sum 2.365 -4.850 8.875 10.387 Atomic orbital electron populations 1.22834 0.80695 1.03361 0.99915 1.87905 1.20322 1.27968 1.95309 1.22545 0.94001 0.84678 0.99258 1.22145 0.93986 0.98079 0.93186 1.62151 1.25007 1.35292 1.02780 1.19445 0.93907 0.89676 0.89020 1.21385 1.47677 0.94294 0.91320 0.92752 1.25718 0.95414 0.95367 1.02590 1.70069 1.51322 1.07141 1.28685 0.85605 0.78382 0.78452 0.79535 1.20402 1.20990 1.19015 1.21689 0.86607 0.94113 0.99052 0.91976 1.21723 1.01691 0.95953 0.99092 1.23646 0.96251 0.97398 0.98461 1.23539 0.91278 0.99669 0.96489 1.66918 1.04327 1.26336 1.29364 1.23675 0.92990 0.91676 1.02157 0.95390 0.88583 0.92671 0.91236 0.95686 0.94301 0.89096 0.98846 0.99637 0.93027 0.93438 0.90716 0.92238 0.89053 0.92825 0.92449 0.86551 0.88058 0.90550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.02 16 2 O -0.40 -14.00 10.64 -148.98 -1.59 -15.59 16 3 C 0.07 2.48 6.13 71.98 0.44 2.92 16 4 C 0.05 1.92 3.89 86.30 0.34 2.25 16 5 N -0.53 -22.34 4.28 -875.53 -3.75 -26.09 16 6 C 0.21 10.62 4.36 85.56 0.37 11.00 16 7 C -0.51 -28.36 8.31 25.60 0.21 -28.14 16 8 H 0.05 3.05 7.23 -2.91 -0.02 3.02 16 9 C 0.01 0.39 5.46 84.66 0.46 0.85 16 10 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 11 Si 0.95 44.45 29.54 68.60 2.03 46.48 16 12 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 13 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 14 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 15 C 0.09 3.45 2.13 44.92 0.10 3.55 16 16 H 0.06 2.63 6.29 -2.39 -0.02 2.62 16 17 C -0.13 -3.73 9.11 71.98 0.66 -3.07 16 18 C -0.14 -4.49 2.87 -10.15 -0.03 -4.52 16 19 C 0.02 0.76 6.70 86.37 0.58 1.34 16 20 N -0.64 -19.38 8.53 -523.60 -4.47 -23.85 16 21 C 0.03 0.67 7.35 86.41 0.64 1.30 16 22 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 23 H 0.10 2.23 8.14 -2.38 -0.02 2.21 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 26 H 0.02 0.99 6.69 -2.39 -0.02 0.98 16 27 H 0.04 1.39 7.03 -2.39 -0.02 1.37 16 28 H 0.09 2.83 6.06 -2.39 -0.01 2.82 16 29 H -0.01 -0.37 6.60 -2.39 -0.02 -0.39 16 30 H -0.01 -0.76 5.51 -2.38 -0.01 -0.77 16 31 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.07 1.77 6.97 -2.39 -0.02 1.75 16 34 H 0.06 1.63 6.34 -2.39 -0.02 1.61 16 35 H 0.09 3.00 6.12 -2.38 -0.01 2.98 16 36 H 0.05 2.22 7.89 -2.39 -0.02 2.20 16 37 H 0.06 2.38 7.69 -2.38 -0.02 2.36 16 38 H 0.32 8.57 8.92 -89.69 -0.80 7.77 16 39 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 40 H 0.08 1.84 7.80 -2.39 -0.02 1.82 16 Total: -1.00 -63.98 309.20 -2.26 -66.25 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.22 Total: 18.44 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: 5.01 Total: -10.50 kcal Atomic # 7 Polarization: -97.15 SS G_CDS: -7.93 Total: -105.08 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -1.59 Total: -15.59 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -63.98 -2.26 -66.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000686264040.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.763 kcal (2) G-P(sol) polarization free energy of solvation -63.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds