Wall clock time and date at job start Mon Mar 30 2020 04:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 C 1.53002 * 109.47347 * 240.00142 * 2 1 3 5 5 C 1.50697 * 109.47245 * 175.00239 * 4 2 1 6 6 H 1.08001 * 119.99985 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99885 * 179.72316 * 5 4 2 8 8 N 1.31517 * 120.00357 * 0.27540 * 7 5 4 9 9 Si 1.86806 * 120.00083 * 180.27285 * 7 5 4 10 10 H 1.48506 * 109.46911 * 60.00137 * 9 7 5 11 11 H 1.48499 * 109.47408 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47105 * 300.00303 * 9 7 5 13 13 N 1.46897 * 109.46958 * 119.99960 * 2 1 3 14 14 C 1.46959 * 110.99657 * 58.80287 * 13 2 1 15 15 C 1.53057 * 109.36085 * 176.81445 * 14 13 2 16 16 N 1.46954 * 109.36962 * 58.39852 * 15 14 13 17 17 C 1.46897 * 111.00275 * 176.81279 * 16 15 14 18 18 C 1.46955 * 110.87651 * 300.67906 * 16 15 14 19 19 H 1.09000 * 109.49451 * 299.35099 * 18 16 15 20 20 C 1.53008 * 109.50685 * 179.29583 * 18 16 15 21 21 O 1.42897 * 109.46657 * 66.81627 * 20 18 16 22 22 C 1.46954 * 111.00275 * 295.00200 * 13 2 1 23 23 H 1.08992 * 109.47040 * 179.97438 * 1 2 3 24 24 H 1.08988 * 109.47188 * 299.99963 * 1 2 3 25 25 H 1.09010 * 109.46706 * 60.00140 * 1 2 3 26 26 H 1.08997 * 109.46925 * 54.99683 * 4 2 1 27 27 H 1.09007 * 109.47112 * 295.00230 * 4 2 1 28 28 H 0.96996 * 120.00511 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.48870 * 296.77098 * 14 13 2 30 30 H 1.08996 * 109.49627 * 56.84537 * 14 13 2 31 31 H 1.09000 * 109.48397 * 298.42510 * 15 14 13 32 32 H 1.08999 * 109.50526 * 178.37745 * 15 14 13 33 33 H 1.08997 * 109.47368 * 192.81624 * 17 16 15 34 34 H 1.08997 * 109.46970 * 312.81279 * 17 16 15 35 35 H 1.09002 * 109.46859 * 72.81292 * 17 16 15 36 36 H 1.08996 * 109.46841 * 186.81699 * 20 18 16 37 37 H 1.08995 * 109.46925 * 306.82080 * 20 18 16 38 38 H 0.96702 * 114.00146 * 180.02562 * 21 20 18 39 39 H 1.09003 * 109.48751 * 303.15768 * 22 13 2 40 40 H 1.09003 * 109.48658 * 63.19763 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1979 -2.3550 8 7 3.5770 -1.8422 -3.2967 9 14 6.0933 -1.0727 -2.4296 10 1 6.6803 -1.6979 -1.2172 11 1 6.5888 -1.7779 -3.6389 12 1 6.4912 0.3566 -2.4915 13 7 2.0196 -0.6925 1.1994 14 6 1.5251 -2.0755 1.2477 15 6 2.1200 -2.7848 2.4666 16 7 1.7489 -2.0530 3.6857 17 6 2.2385 -2.7455 4.8851 18 6 2.2435 -0.6700 3.6372 19 1 3.3307 -0.6750 3.5602 20 6 1.8254 0.0670 4.9113 21 8 2.5050 -0.4990 6.0337 22 6 1.6485 0.0394 2.4185 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.6054 -0.2617 -2.1369 27 1 1.7517 -1.7715 -1.2057 28 1 4.0616 -2.2521 -4.0302 29 1 0.4378 -2.0705 1.3248 30 1 1.8232 -2.6003 0.3401 31 1 3.2059 -2.8140 2.3762 32 1 1.7322 -3.8021 2.5209 33 1 1.7655 -2.3187 5.7695 34 1 1.9937 -3.8055 4.8180 35 1 3.3195 -2.6260 4.9577 36 1 2.0857 1.1217 4.8229 37 1 0.7489 -0.0311 5.0511 38 1 2.2872 -0.0801 6.8776 39 1 2.0366 1.0565 2.3644 40 1 0.5626 0.0688 2.5086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687590141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:12 Heat of formation + Delta-G solvation = -36.684018 kcal Electronic energy + Delta-G solvation = -18826.344383 eV Core-core repulsion = 16062.220908 eV Total energy + Delta-G solvation = -2764.123475 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.47666 -37.13062 -35.48712 -32.78835 -31.50735 -30.69760 -27.69698 -27.12151 -25.34347 -23.65165 -22.65219 -22.22334 -19.71362 -18.56016 -17.34358 -16.16293 -16.01990 -15.45742 -14.75244 -14.49702 -14.38186 -13.99541 -13.64281 -13.23678 -13.02668 -12.79334 -12.27708 -12.08316 -11.81922 -11.60323 -11.49017 -11.22495 -11.05922 -10.73442 -10.58586 -10.55607 -10.35679 -10.18540 -9.89211 -9.81332 -9.13649 -8.97599 -8.24528 -8.07336 -7.44531 -5.87954 -3.85876 3.41446 3.45090 3.49045 4.05421 4.16503 4.56918 4.70569 5.10087 5.26617 5.29804 5.45886 5.49668 5.57194 5.64124 5.78303 5.78794 5.82046 5.90714 5.93282 6.00574 6.02148 6.12020 6.27298 6.33523 6.43781 6.50776 6.66267 6.74931 6.99313 7.29281 7.33496 7.51671 7.56784 7.70799 7.92412 8.03589 8.13786 8.58909 9.19927 9.75883 11.23887 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025997 B = 0.006649 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.791049 B = 4210.183181 C = 4585.200862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.029 3.971 5 C -0.491 4.491 6 H 0.059 0.941 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.511 5.511 14 C 0.057 3.943 15 C 0.056 3.944 16 N -0.539 5.539 17 C 0.032 3.968 18 C 0.088 3.912 19 H 0.055 0.945 20 C 0.083 3.917 21 O -0.568 6.568 22 C 0.061 3.939 23 H 0.053 0.947 24 H 0.040 0.960 25 H 0.055 0.945 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.258 0.742 29 H 0.033 0.967 30 H 0.095 0.905 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.024 0.976 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.371 0.629 39 H 0.072 0.928 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 2.136 15.607 16.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.020 4.020 3 H 0.088 0.912 4 C -0.008 4.008 5 C -0.530 4.530 6 H 0.077 0.923 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.235 5.235 14 C -0.071 4.071 15 C -0.071 4.071 16 N -0.265 5.265 17 C -0.116 4.116 18 C -0.021 4.021 19 H 0.073 0.927 20 C 0.005 3.995 21 O -0.373 6.373 22 C -0.068 4.068 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.070 0.930 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.218 0.782 39 H 0.091 0.909 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -5.381 1.652 14.959 15.983 hybrid contribution 0.825 0.375 0.281 0.949 sum -4.556 2.027 15.240 16.035 Atomic orbital electron populations 1.22511 0.99698 1.01410 1.00639 1.21910 0.90125 0.98378 0.91638 0.91241 1.19227 0.96337 0.95404 0.89860 1.21137 0.91791 1.32970 1.07097 0.92256 1.24996 0.97958 0.95863 0.95990 1.69950 1.35282 1.36789 1.12434 0.86705 0.86449 0.77992 0.77069 1.20445 1.21634 1.20504 1.62237 1.58974 1.01507 1.00758 1.22194 0.96682 0.90236 0.98020 1.22221 0.99130 0.96692 0.89102 1.62255 1.59465 1.01866 1.02866 1.22436 0.98331 0.97431 0.93392 1.21671 0.98596 0.89002 0.92825 0.92680 1.22184 0.95882 0.95615 0.85838 1.86643 1.70951 1.61946 1.17740 1.22044 0.97877 0.97147 0.89711 0.92832 0.94049 0.92583 0.96283 0.96154 0.93260 0.94876 0.88677 0.93934 0.90939 0.90016 0.93040 0.95727 0.93193 0.92935 0.78200 0.90941 0.94527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.49 37.16 0.32 -2.88 16 2 C 0.09 1.79 2.30 -67.71 -0.16 1.63 16 3 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 4 C 0.03 0.73 4.27 -27.88 -0.12 0.61 16 5 C -0.49 -13.81 8.84 -34.44 -0.30 -14.11 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.48 5.46 -17.82 -0.10 1.38 16 8 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 9 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 N -0.51 -9.93 4.41 -226.48 -1.00 -10.92 16 14 C 0.06 1.06 4.82 -3.76 -0.02 1.04 16 15 C 0.06 0.95 5.60 -3.77 -0.02 0.93 16 16 N -0.54 -8.30 4.78 -234.73 -1.12 -9.42 16 17 C 0.03 0.44 8.30 60.06 0.50 0.94 16 18 C 0.09 1.33 2.37 -67.65 -0.16 1.17 16 19 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 20 C 0.08 0.96 6.36 37.16 0.24 1.20 16 21 O -0.57 -6.16 10.26 -35.23 -0.36 -6.52 16 22 C 0.06 0.98 4.53 -3.77 -0.02 0.96 16 23 H 0.05 0.94 6.46 -51.93 -0.34 0.60 16 24 H 0.04 0.64 6.59 -51.94 -0.34 0.30 16 25 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.54 6.12 -51.93 -0.32 0.23 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.03 0.60 6.47 -51.93 -0.34 0.26 16 30 H 0.10 2.01 6.07 -51.93 -0.32 1.70 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.09 8.04 -51.93 -0.42 0.67 16 33 H 0.08 1.04 5.96 -51.93 -0.31 0.73 16 34 H 0.05 0.65 7.97 -51.93 -0.41 0.23 16 35 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16 36 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.37 2.24 9.12 45.56 0.42 2.66 16 39 H 0.07 1.10 8.12 -51.93 -0.42 0.68 16 40 H 0.04 0.57 6.60 -51.93 -0.34 0.23 16 LS Contribution 303.46 15.07 4.57 4.57 Total: -1.00 -31.07 303.46 -8.09 -39.16 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.05 Total: -0.46 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: 0.16 Total: -7.13 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -1.39 Total: -46.86 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.36 Total: -6.52 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -31.07 -8.09 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687590141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.476 kcal (2) G-P(sol) polarization free energy of solvation -31.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds