Wall clock time and date at job start Mon Mar 30 2020 04:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47213 * 2 1 4 4 C 1.53002 * 109.47347 * 240.00142 * 2 1 3 5 5 C 1.50697 * 109.47245 * 175.00239 * 4 2 1 6 6 H 1.08001 * 119.99985 * 0.02562 * 5 4 2 7 7 C 1.37872 * 119.99885 * 179.72316 * 5 4 2 8 8 N 1.31517 * 120.00357 * 0.27540 * 7 5 4 9 9 Si 1.86806 * 120.00083 * 180.27285 * 7 5 4 10 10 H 1.48506 * 109.46911 * 60.00137 * 9 7 5 11 11 H 1.48499 * 109.47408 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47105 * 300.00303 * 9 7 5 13 13 N 1.46897 * 109.46958 * 119.99960 * 2 1 3 14 14 C 1.46959 * 110.99657 * 58.80287 * 13 2 1 15 15 C 1.53057 * 109.36085 * 176.81445 * 14 13 2 16 16 N 1.46954 * 109.36962 * 58.39852 * 15 14 13 17 17 C 1.46897 * 111.00275 * 176.81279 * 16 15 14 18 18 C 1.46955 * 110.87651 * 300.67906 * 16 15 14 19 19 H 1.09000 * 109.49451 * 299.35099 * 18 16 15 20 20 C 1.53008 * 109.50685 * 179.29583 * 18 16 15 21 21 O 1.42897 * 109.46657 * 66.81627 * 20 18 16 22 22 C 1.46954 * 111.00275 * 295.00200 * 13 2 1 23 23 H 1.08992 * 109.47040 * 179.97438 * 1 2 3 24 24 H 1.08988 * 109.47188 * 299.99963 * 1 2 3 25 25 H 1.09010 * 109.46706 * 60.00140 * 1 2 3 26 26 H 1.08997 * 109.46925 * 54.99683 * 4 2 1 27 27 H 1.09007 * 109.47112 * 295.00230 * 4 2 1 28 28 H 0.96996 * 120.00511 * 179.97438 * 8 7 5 29 29 H 1.09006 * 109.48870 * 296.77098 * 14 13 2 30 30 H 1.08996 * 109.49627 * 56.84537 * 14 13 2 31 31 H 1.09000 * 109.48397 * 298.42510 * 15 14 13 32 32 H 1.08999 * 109.50526 * 178.37745 * 15 14 13 33 33 H 1.08997 * 109.47368 * 192.81624 * 17 16 15 34 34 H 1.08997 * 109.46970 * 312.81279 * 17 16 15 35 35 H 1.09002 * 109.46859 * 72.81292 * 17 16 15 36 36 H 1.08996 * 109.46841 * 186.81699 * 20 18 16 37 37 H 1.08995 * 109.46925 * 306.82080 * 20 18 16 38 38 H 0.96702 * 114.00146 * 180.02562 * 21 20 18 39 39 H 1.09003 * 109.48751 * 303.15768 * 22 13 2 40 40 H 1.09003 * 109.48658 * 63.19763 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3127 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1979 -2.3550 8 7 3.5770 -1.8422 -3.2967 9 14 6.0933 -1.0727 -2.4296 10 1 6.6803 -1.6979 -1.2172 11 1 6.5888 -1.7779 -3.6389 12 1 6.4912 0.3566 -2.4915 13 7 2.0196 -0.6925 1.1994 14 6 1.5251 -2.0755 1.2477 15 6 2.1200 -2.7848 2.4666 16 7 1.7489 -2.0530 3.6857 17 6 2.2385 -2.7455 4.8851 18 6 2.2435 -0.6700 3.6372 19 1 3.3307 -0.6750 3.5602 20 6 1.8254 0.0670 4.9113 21 8 2.5050 -0.4990 6.0337 22 6 1.6485 0.0394 2.4185 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 1.6054 -0.2617 -2.1369 27 1 1.7517 -1.7715 -1.2057 28 1 4.0616 -2.2521 -4.0302 29 1 0.4378 -2.0705 1.3248 30 1 1.8232 -2.6003 0.3401 31 1 3.2059 -2.8140 2.3762 32 1 1.7322 -3.8021 2.5209 33 1 1.7655 -2.3187 5.7695 34 1 1.9937 -3.8055 4.8180 35 1 3.3195 -2.6260 4.9577 36 1 2.0857 1.1217 4.8229 37 1 0.7489 -0.0311 5.0511 38 1 2.2872 -0.0801 6.8776 39 1 2.0366 1.0565 2.3644 40 1 0.5626 0.0688 2.5086 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687590141.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:12 Heat of formation + Delta-G solvation = -61.397097 kcal Electronic energy + Delta-G solvation = -18827.416023 eV Core-core repulsion = 16062.220908 eV Total energy + Delta-G solvation = -2765.195115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.79710 -38.32338 -36.67243 -34.83671 -32.85264 -32.22598 -29.42853 -28.58379 -26.52064 -25.30971 -24.21791 -23.62730 -21.06710 -20.08472 -18.36487 -18.20246 -17.26799 -16.77581 -16.51468 -16.05329 -15.67078 -15.45241 -14.90357 -14.75670 -14.18669 -14.05702 -13.88881 -13.65080 -13.40704 -13.11993 -12.95717 -12.70141 -12.53655 -12.47275 -12.39792 -12.05375 -11.90004 -11.62046 -11.45820 -11.11089 -10.95457 -10.71636 -10.47486 -9.34276 -8.92633 -8.10794 -6.15413 1.39680 1.42140 1.49645 2.45869 2.93964 2.96707 3.23955 3.52604 3.91769 4.09832 4.16061 4.28826 4.35556 4.39102 4.42263 4.52374 4.53842 4.63054 4.67622 4.71755 4.72508 4.83861 4.97449 4.99776 5.08527 5.15018 5.21897 5.27381 5.31927 5.49596 5.70060 5.89502 6.06350 6.10828 6.32634 6.41062 6.52925 6.96873 6.97986 7.50197 9.00877 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025997 B = 0.006649 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.791049 B = 4210.183181 C = 4585.200862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.095 3.905 3 H 0.067 0.933 4 C 0.035 3.965 5 C -0.501 4.501 6 H 0.054 0.946 7 C -0.003 4.003 8 N -0.938 5.938 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.269 1.269 13 N -0.535 5.535 14 C 0.065 3.935 15 C 0.062 3.938 16 N -0.536 5.536 17 C 0.037 3.963 18 C 0.086 3.914 19 H 0.025 0.975 20 C 0.093 3.907 21 O -0.582 6.582 22 C 0.065 3.935 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.058 0.942 26 H -0.006 1.006 27 H -0.001 1.001 28 H 0.259 0.741 29 H 0.043 0.957 30 H 0.059 0.941 31 H 0.017 0.983 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.009 0.991 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.395 0.605 39 H 0.081 0.919 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.047 2.971 17.733 18.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 H 0.085 0.915 4 C -0.003 4.003 5 C -0.539 4.539 6 H 0.072 0.928 7 C -0.199 4.199 8 N -0.580 5.580 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.259 5.259 14 C -0.064 4.064 15 C -0.066 4.066 16 N -0.262 5.262 17 C -0.110 4.110 18 C -0.023 4.023 19 H 0.043 0.957 20 C 0.015 3.985 21 O -0.391 6.391 22 C -0.063 4.063 23 H 0.068 0.932 24 H 0.087 0.913 25 H 0.077 0.923 26 H 0.012 0.988 27 H 0.017 0.983 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.028 0.972 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.245 0.755 39 H 0.100 0.900 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.756 2.505 17.122 18.236 hybrid contribution 0.937 0.108 -0.341 1.003 sum -4.819 2.613 16.781 17.653 Atomic orbital electron populations 1.22364 0.97026 1.01603 1.02109 1.21616 0.92200 0.97278 0.90162 0.91510 1.19083 0.95080 0.94531 0.91559 1.21441 0.93342 1.32419 1.06722 0.92758 1.25808 1.02646 0.95655 0.95762 1.70074 1.37052 1.37783 1.13084 0.85683 0.80892 0.78403 0.77084 1.20191 1.21107 1.19431 1.62119 1.59983 1.02056 1.01726 1.22026 0.97173 0.89867 0.97303 1.22127 0.97437 0.97647 0.89377 1.62318 1.59161 1.02065 1.02624 1.22457 0.97460 0.98086 0.93042 1.21711 0.96727 0.89275 0.94602 0.95738 1.22011 0.96385 0.95697 0.84409 1.86570 1.71106 1.62613 1.18820 1.22082 0.98712 0.97204 0.88345 0.93244 0.91322 0.92309 0.98786 0.98262 0.93232 0.93894 0.92272 0.96444 0.89237 0.88470 0.91988 0.97183 0.91459 0.91666 0.75493 0.90034 0.93186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.77 8.49 71.98 0.61 -5.15 16 2 C 0.10 3.91 2.30 44.92 0.10 4.01 16 3 H 0.07 2.75 8.11 -2.39 -0.02 2.73 16 4 C 0.03 1.81 4.27 29.85 0.13 1.94 16 5 C -0.50 -28.81 8.84 25.60 0.23 -28.59 16 6 H 0.05 3.12 7.74 -2.91 -0.02 3.09 16 7 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 8 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 9 Si 0.95 46.21 29.54 68.60 2.03 48.24 16 10 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 11 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.53 -20.67 4.41 -870.44 -3.84 -24.52 16 14 C 0.06 2.42 4.82 86.31 0.42 2.84 16 15 C 0.06 2.08 5.60 86.31 0.48 2.56 16 16 N -0.54 -15.61 4.78 -896.54 -4.29 -19.90 16 17 C 0.04 0.94 8.30 127.69 1.06 2.00 16 18 C 0.09 2.46 2.37 44.92 0.11 2.57 16 19 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 20 C 0.09 1.86 6.36 71.98 0.46 2.32 16 21 O -0.58 -10.84 10.26 -148.98 -1.53 -12.37 16 22 C 0.06 1.96 4.53 86.31 0.39 2.35 16 23 H 0.05 1.68 6.46 -2.39 -0.02 1.67 16 24 H 0.07 1.93 6.59 -2.39 -0.02 1.91 16 25 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 26 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.00 -0.05 6.12 -2.38 -0.01 -0.06 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H 0.04 1.51 6.47 -2.38 -0.02 1.50 16 30 H 0.06 2.63 6.07 -2.39 -0.01 2.61 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 2.63 8.04 -2.39 -0.02 2.61 16 33 H 0.10 2.18 5.96 -2.39 -0.01 2.16 16 34 H 0.06 1.42 7.97 -2.39 -0.02 1.40 16 35 H 0.01 0.27 8.00 -2.39 -0.02 0.25 16 36 H 0.07 1.12 8.14 -2.39 -0.02 1.11 16 37 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.39 3.33 9.12 -74.06 -0.68 2.65 16 39 H 0.08 2.30 8.12 -2.39 -0.02 2.28 16 40 H 0.05 1.40 6.60 -2.39 -0.02 1.38 16 Total: -1.00 -67.73 303.46 -2.57 -70.30 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.33 Total: 8.74 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.44 Total: -12.84 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -7.85 Total: -102.06 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -1.53 Total: -12.37 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -67.73 -2.57 -70.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687590141.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.899 kcal (2) G-P(sol) polarization free energy of solvation -67.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds