Wall clock time and date at job start Mon Mar 30 2020 04:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47211 * 2 1 4 4 C 1.53004 * 109.46687 * 119.99910 * 2 1 3 5 5 C 1.50700 * 109.46985 * 296.66746 * 4 2 1 6 6 H 1.07998 * 120.00282 * 4.89631 * 5 4 2 7 7 C 1.37876 * 120.00144 * 184.90002 * 5 4 2 8 8 N 1.31511 * 120.00061 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00311 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46951 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47868 * 119.99507 * 9 7 5 12 12 H 1.48507 * 109.47131 * 239.99650 * 9 7 5 13 13 N 1.46902 * 109.47118 * 239.99538 * 2 1 3 14 14 C 1.46965 * 110.99596 * 187.77882 * 13 2 1 15 15 C 1.53052 * 109.35975 * 176.80995 * 14 13 2 16 16 N 1.46961 * 109.36474 * 58.40241 * 15 14 13 17 17 C 1.46892 * 111.00056 * 176.80881 * 16 15 14 18 18 C 1.46955 * 110.87976 * 300.67818 * 16 15 14 19 19 H 1.08997 * 109.48782 * 299.35030 * 18 16 15 20 20 C 1.52999 * 109.50744 * 179.29516 * 18 16 15 21 21 O 1.42907 * 109.46883 * 66.66805 * 20 18 16 22 22 C 1.46947 * 110.99945 * 63.97869 * 13 2 1 23 23 H 1.08995 * 109.47238 * 300.00414 * 1 2 3 24 24 H 1.09002 * 109.46744 * 60.00009 * 1 2 3 25 25 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47726 * 56.66932 * 4 2 1 27 27 H 1.09005 * 109.46919 * 176.67670 * 4 2 1 28 28 H 0.97003 * 120.00700 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.48983 * 296.77966 * 14 13 2 30 30 H 1.08997 * 109.48794 * 56.84905 * 14 13 2 31 31 H 1.09000 * 109.49053 * 298.43110 * 15 14 13 32 32 H 1.09001 * 109.50753 * 178.38208 * 15 14 13 33 33 H 1.09006 * 109.47424 * 192.83059 * 17 16 15 34 34 H 1.09003 * 109.47124 * 312.83037 * 17 16 15 35 35 H 1.09004 * 109.47536 * 72.82958 * 17 16 15 36 36 H 1.08995 * 109.47534 * 186.66627 * 20 18 16 37 37 H 1.08999 * 109.47053 * 306.67460 * 20 18 16 38 38 H 0.96699 * 113.99682 * 179.97438 * 21 20 18 39 39 H 1.09000 * 109.49419 * 303.15570 * 22 13 2 40 40 H 1.09004 * 109.48909 * 63.22469 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6061 0.0353 2.4783 6 1 0.9592 0.8948 2.3831 7 6 2.0352 -0.3698 3.7245 8 7 2.8226 -1.4166 3.8406 9 14 1.4969 0.5675 5.2479 10 1 0.6186 1.6969 4.8497 11 1 0.7517 -0.3442 6.1527 12 1 2.6927 1.0956 5.9526 13 7 2.0197 -0.6926 -1.1994 14 6 3.4769 -0.8751 -1.1440 15 6 3.9359 -1.6682 -2.3699 16 7 3.5440 -0.9492 -3.5902 17 6 4.0336 -1.6417 -4.7895 18 6 2.0868 -0.7666 -3.6455 19 1 1.5983 -1.7410 -3.6521 20 6 1.7157 -0.0009 -4.9170 21 8 2.0049 -0.8078 -6.0605 22 6 1.6278 0.0264 -2.4196 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6287 -1.7302 1.2798 27 1 3.1284 -0.7732 1.2201 28 1 3.1242 -1.7019 4.7173 29 1 3.9654 0.0993 -1.1374 30 1 3.7409 -1.4208 -0.2382 31 1 3.4684 -2.6528 -2.3620 32 1 5.0198 -1.7802 -2.3461 33 1 3.9337 -0.9857 -5.6543 34 1 5.0823 -1.9064 -4.6536 35 1 3.4484 -2.5471 -4.9508 36 1 0.6523 0.2376 -4.9003 37 1 2.2943 0.9214 -4.9676 38 1 1.7936 -0.3848 -6.9040 39 1 0.5438 0.1381 -2.4437 40 1 2.0954 1.0110 -2.4275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687590142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:16 Heat of formation + Delta-G solvation = -39.294684 kcal Electronic energy + Delta-G solvation = -18527.661956 eV Core-core repulsion = 15763.425274 eV Total energy + Delta-G solvation = -2764.236682 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.48014 -37.08282 -35.53460 -32.99833 -31.56307 -31.02063 -27.87402 -26.75571 -25.50238 -23.90884 -22.50232 -21.96733 -19.60219 -19.00244 -17.41833 -16.66108 -15.96832 -15.40040 -14.74551 -14.59454 -14.34143 -13.84994 -13.69692 -13.50319 -13.10531 -12.92933 -12.17389 -12.15346 -11.80197 -11.66982 -11.31705 -11.29522 -11.02899 -10.85126 -10.74250 -10.62132 -10.28441 -10.16136 -9.96505 -9.85116 -9.16504 -8.99938 -8.32916 -8.15646 -7.67343 -5.99234 -4.00569 3.31404 3.39120 3.42577 3.98023 4.07820 4.44819 4.63340 5.01609 5.20383 5.23289 5.36836 5.39178 5.50260 5.58739 5.69617 5.71399 5.80026 5.86293 5.90853 6.05270 6.17828 6.20318 6.27301 6.34942 6.43359 6.49174 6.70946 6.92554 7.10941 7.22193 7.25168 7.46079 7.56923 7.63612 7.82506 7.88056 8.07963 8.44883 9.05621 9.62737 11.12301 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.047186 B = 0.005129 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.250994 B = 5457.891286 C = 5899.315971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.086 3.914 3 H 0.028 0.972 4 C 0.028 3.972 5 C -0.516 4.516 6 H 0.056 0.944 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.285 1.285 13 N -0.535 5.535 14 C 0.054 3.946 15 C 0.057 3.943 16 N -0.540 5.540 17 C 0.032 3.968 18 C 0.089 3.911 19 H 0.054 0.946 20 C 0.082 3.918 21 O -0.568 6.568 22 C 0.062 3.938 23 H 0.066 0.934 24 H 0.030 0.970 25 H 0.054 0.946 26 H 0.021 0.979 27 H 0.024 0.976 28 H 0.259 0.741 29 H 0.035 0.965 30 H 0.096 0.904 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.052 0.948 35 H 0.024 0.976 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.372 0.628 39 H 0.078 0.922 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 2.144 -17.074 17.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.021 4.021 3 H 0.046 0.954 4 C -0.009 4.009 5 C -0.555 4.555 6 H 0.075 0.925 7 C -0.143 4.143 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.211 1.211 13 N -0.260 5.260 14 C -0.074 4.074 15 C -0.071 4.071 16 N -0.265 5.265 17 C -0.116 4.116 18 C -0.020 4.020 19 H 0.072 0.928 20 C 0.004 3.996 21 O -0.373 6.373 22 C -0.067 4.067 23 H 0.085 0.915 24 H 0.049 0.951 25 H 0.073 0.927 26 H 0.039 0.961 27 H 0.042 0.958 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.219 0.781 39 H 0.096 0.904 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.428 1.620 -16.462 16.547 hybrid contribution -0.414 0.846 0.517 1.074 sum -0.842 2.466 -15.945 16.157 Atomic orbital electron populations 1.21750 0.95402 1.01536 1.00000 1.21829 0.94958 0.95389 0.89939 0.95365 1.19239 0.96555 0.95805 0.89288 1.21246 1.29763 1.13234 0.91217 0.92536 1.24986 0.95174 0.95140 0.99037 1.69972 1.34582 1.25177 1.23624 0.86568 0.78411 0.79923 0.83283 1.19781 1.21047 1.21096 1.62215 1.12085 1.49815 1.01927 1.22242 0.87975 0.99358 0.97844 1.22239 0.99806 0.95779 0.89257 1.62235 1.11638 1.49904 1.02748 1.22447 0.98335 0.97635 0.93166 1.21676 0.88506 0.98871 0.92969 0.92828 1.22184 0.98596 0.93548 0.85270 1.86632 1.87982 1.46286 1.16434 1.22057 1.00203 0.95106 0.89368 0.91530 0.95067 0.92723 0.96075 0.95787 0.93091 0.94627 0.88562 0.94245 0.90669 0.89903 0.92953 0.95756 0.93123 0.92798 0.78101 0.90357 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.49 8.86 37.16 0.33 -2.16 16 2 C 0.09 1.81 2.13 -67.71 -0.14 1.67 16 3 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.03 0.73 4.10 -27.88 -0.11 0.61 16 5 C -0.52 -14.33 8.48 -34.44 -0.29 -14.63 16 6 H 0.06 1.53 6.77 -52.49 -0.36 1.17 16 7 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 8 N -0.89 -26.68 13.29 55.43 0.74 -25.95 16 9 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.54 -10.06 4.58 -226.48 -1.04 -11.10 16 14 C 0.05 0.99 5.13 -3.76 -0.02 0.97 16 15 C 0.06 0.90 5.60 -3.76 -0.02 0.88 16 16 N -0.54 -7.98 4.78 -234.73 -1.12 -9.11 16 17 C 0.03 0.41 8.30 60.06 0.50 0.91 16 18 C 0.09 1.27 2.37 -67.66 -0.16 1.11 16 19 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 20 C 0.08 0.91 6.36 37.16 0.24 1.14 16 21 O -0.57 -5.77 10.24 -35.23 -0.36 -6.13 16 22 C 0.06 0.97 4.67 -3.77 -0.02 0.95 16 23 H 0.07 1.34 6.74 -51.93 -0.35 0.99 16 24 H 0.03 0.50 6.43 -51.93 -0.33 0.17 16 25 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 26 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.02 0.65 6.05 -51.93 -0.31 0.34 16 28 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 1.95 5.93 -51.93 -0.31 1.64 16 31 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.07 8.04 -51.93 -0.42 0.65 16 33 H 0.08 1.01 5.96 -51.93 -0.31 0.70 16 34 H 0.05 0.62 7.97 -51.93 -0.41 0.21 16 35 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.37 2.02 9.12 45.56 0.42 2.44 16 39 H 0.08 1.15 6.26 -51.93 -0.33 0.83 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 304.05 15.07 4.58 4.58 Total: -1.00 -30.71 304.05 -8.09 -38.80 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.07 Total: -0.65 kcal Atomic # 6 Polarization: -7.19 SS G_CDS: 0.20 Total: -6.99 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -1.42 Total: -46.15 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.36 Total: -6.13 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.71 -8.09 -38.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687590142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.490 kcal (2) G-P(sol) polarization free energy of solvation -30.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds