Wall clock time and date at job start Mon Mar 30 2020 04:54:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08993 * 109.47211 * 2 1 4 4 C 1.53004 * 109.46687 * 119.99910 * 2 1 3 5 5 C 1.50700 * 109.46985 * 296.66746 * 4 2 1 6 6 H 1.07998 * 120.00282 * 4.89631 * 5 4 2 7 7 C 1.37876 * 120.00144 * 184.90002 * 5 4 2 8 8 N 1.31511 * 120.00061 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00311 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46951 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.47868 * 119.99507 * 9 7 5 12 12 H 1.48507 * 109.47131 * 239.99650 * 9 7 5 13 13 N 1.46902 * 109.47118 * 239.99538 * 2 1 3 14 14 C 1.46965 * 110.99596 * 187.77882 * 13 2 1 15 15 C 1.53052 * 109.35975 * 176.80995 * 14 13 2 16 16 N 1.46961 * 109.36474 * 58.40241 * 15 14 13 17 17 C 1.46892 * 111.00056 * 176.80881 * 16 15 14 18 18 C 1.46955 * 110.87976 * 300.67818 * 16 15 14 19 19 H 1.08997 * 109.48782 * 299.35030 * 18 16 15 20 20 C 1.52999 * 109.50744 * 179.29516 * 18 16 15 21 21 O 1.42907 * 109.46883 * 66.66805 * 20 18 16 22 22 C 1.46947 * 110.99945 * 63.97869 * 13 2 1 23 23 H 1.08995 * 109.47238 * 300.00414 * 1 2 3 24 24 H 1.09002 * 109.46744 * 60.00009 * 1 2 3 25 25 H 1.09001 * 109.47087 * 180.02562 * 1 2 3 26 26 H 1.08992 * 109.47726 * 56.66932 * 4 2 1 27 27 H 1.09005 * 109.46919 * 176.67670 * 4 2 1 28 28 H 0.97003 * 120.00700 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.48983 * 296.77966 * 14 13 2 30 30 H 1.08997 * 109.48794 * 56.84905 * 14 13 2 31 31 H 1.09000 * 109.49053 * 298.43110 * 15 14 13 32 32 H 1.09001 * 109.50753 * 178.38208 * 15 14 13 33 33 H 1.09006 * 109.47424 * 192.83059 * 17 16 15 34 34 H 1.09003 * 109.47124 * 312.83037 * 17 16 15 35 35 H 1.09004 * 109.47536 * 72.82958 * 17 16 15 36 36 H 1.08995 * 109.47534 * 186.66627 * 20 18 16 37 37 H 1.08999 * 109.47053 * 306.67460 * 20 18 16 38 38 H 0.96699 * 113.99682 * 179.97438 * 21 20 18 39 39 H 1.09000 * 109.49419 * 303.15570 * 22 13 2 40 40 H 1.09004 * 109.48909 * 63.22469 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6061 0.0353 2.4783 6 1 0.9592 0.8948 2.3831 7 6 2.0352 -0.3698 3.7245 8 7 2.8226 -1.4166 3.8406 9 14 1.4969 0.5675 5.2479 10 1 0.6186 1.6969 4.8497 11 1 0.7517 -0.3442 6.1527 12 1 2.6927 1.0956 5.9526 13 7 2.0197 -0.6926 -1.1994 14 6 3.4769 -0.8751 -1.1440 15 6 3.9359 -1.6682 -2.3699 16 7 3.5440 -0.9492 -3.5902 17 6 4.0336 -1.6417 -4.7895 18 6 2.0868 -0.7666 -3.6455 19 1 1.5983 -1.7410 -3.6521 20 6 1.7157 -0.0009 -4.9170 21 8 2.0049 -0.8078 -6.0605 22 6 1.6278 0.0264 -2.4196 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6287 -1.7302 1.2798 27 1 3.1284 -0.7732 1.2201 28 1 3.1242 -1.7019 4.7173 29 1 3.9654 0.0993 -1.1374 30 1 3.7409 -1.4208 -0.2382 31 1 3.4684 -2.6528 -2.3620 32 1 5.0198 -1.7802 -2.3461 33 1 3.9337 -0.9857 -5.6543 34 1 5.0823 -1.9064 -4.6536 35 1 3.4484 -2.5471 -4.9508 36 1 0.6523 0.2376 -4.9003 37 1 2.2943 0.9214 -4.9676 38 1 1.7936 -0.3848 -6.9040 39 1 0.5438 0.1381 -2.4437 40 1 2.0954 1.0110 -2.4275 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687590142.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:15 Heat of formation + Delta-G solvation = -63.775999 kcal Electronic energy + Delta-G solvation = -18528.723545 eV Core-core repulsion = 15763.425274 eV Total energy + Delta-G solvation = -2765.298271 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.76024 -38.26844 -36.72824 -34.96342 -32.85445 -32.63843 -29.48712 -28.26988 -26.83887 -25.38917 -24.14137 -23.24334 -20.89274 -20.65530 -18.71175 -18.20900 -17.11740 -16.82044 -16.58605 -15.90189 -15.78017 -15.33238 -15.21020 -14.64203 -14.38072 -14.16079 -13.95742 -13.52089 -13.33452 -13.08325 -12.90168 -12.76439 -12.69598 -12.45694 -12.32685 -12.08201 -11.85255 -11.64684 -11.55986 -11.13135 -10.93159 -10.72063 -10.51318 -9.37014 -9.18138 -8.17732 -6.27139 1.40721 1.41158 1.53969 2.41220 2.87995 2.92633 3.16367 3.46557 3.86682 4.04797 4.18582 4.25405 4.27465 4.33859 4.41399 4.50598 4.59689 4.64408 4.67820 4.70911 4.72444 4.83058 4.94034 5.00131 5.06038 5.15093 5.21808 5.27438 5.40987 5.49993 5.69584 5.79466 6.02934 6.05751 6.17156 6.30910 6.37942 6.88807 6.95871 7.41172 8.94758 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.047186 B = 0.005129 C = 0.004745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 593.250994 B = 5457.891286 C = 5899.315971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.095 3.905 3 H 0.021 0.979 4 C 0.038 3.962 5 C -0.531 4.531 6 H 0.063 0.937 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.260 1.260 11 H -0.280 1.280 12 H -0.280 1.280 13 N -0.545 5.545 14 C 0.058 3.942 15 C 0.066 3.934 16 N -0.545 5.545 17 C 0.038 3.962 18 C 0.088 3.912 19 H 0.035 0.965 20 C 0.092 3.908 21 O -0.581 6.581 22 C 0.063 3.937 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.046 0.954 26 H -0.012 1.012 27 H -0.001 1.001 28 H 0.262 0.738 29 H 0.028 0.972 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.015 0.985 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.395 0.605 39 H 0.093 0.907 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 3.573 -18.513 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.012 4.012 3 H 0.039 0.961 4 C 0.000 4.000 5 C -0.570 4.570 6 H 0.082 0.918 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.206 1.206 13 N -0.270 5.270 14 C -0.070 4.070 15 C -0.063 4.063 16 N -0.270 5.270 17 C -0.110 4.110 18 C -0.021 4.021 19 H 0.053 0.947 20 C 0.014 3.986 21 O -0.390 6.390 22 C -0.065 4.065 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.065 0.935 26 H 0.006 0.994 27 H 0.017 0.983 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.034 0.966 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.246 0.754 39 H 0.112 0.888 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.319 3.062 -17.944 18.252 hybrid contribution -0.109 0.362 0.896 0.973 sum -1.429 3.424 -17.048 17.447 Atomic orbital electron populations 1.21653 0.93590 1.01394 1.01232 1.21560 0.96303 0.94212 0.89151 0.96065 1.19055 0.94877 0.94452 0.91573 1.21637 1.29698 1.13456 0.92168 0.91848 1.25921 0.95135 0.96033 1.02583 1.70113 1.35851 1.26890 1.24546 0.85437 0.78175 0.78760 0.78908 1.18417 1.20569 1.20624 1.62175 1.12204 1.50220 1.02387 1.22116 0.87983 0.98890 0.98007 1.22116 1.00551 0.94715 0.88895 1.62279 1.12127 1.49814 1.02786 1.22454 0.98603 0.97332 0.92578 1.21698 0.87980 0.98213 0.94224 0.94725 1.22006 0.99793 0.92804 0.84032 1.86559 1.88182 1.46798 1.17412 1.22134 1.01120 0.94932 0.88288 0.92575 0.91493 0.93511 0.99372 0.98275 0.92930 0.95324 0.91629 0.95312 0.89171 0.88635 0.92019 0.96633 0.91173 0.92152 0.75443 0.88844 0.94493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.55 8.86 71.98 0.64 -3.91 16 2 C 0.10 4.07 2.13 44.92 0.10 4.17 16 3 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 4 C 0.04 2.02 4.10 29.85 0.12 2.14 16 5 C -0.53 -30.05 8.48 25.60 0.22 -29.84 16 6 H 0.06 3.43 6.77 -2.91 -0.02 3.41 16 7 C 0.00 0.05 5.46 84.65 0.46 0.51 16 8 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 9 Si 0.96 44.41 29.54 68.60 2.03 46.43 16 10 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 13 N -0.54 -20.62 4.58 -870.46 -3.98 -24.61 16 14 C 0.06 2.21 5.13 86.31 0.44 2.65 16 15 C 0.07 2.06 5.60 86.31 0.48 2.54 16 16 N -0.54 -15.34 4.78 -896.54 -4.29 -19.63 16 17 C 0.04 0.89 8.30 127.69 1.06 1.95 16 18 C 0.09 2.37 2.37 44.92 0.11 2.47 16 19 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 20 C 0.09 1.74 6.36 71.98 0.46 2.20 16 21 O -0.58 -9.95 10.24 -148.98 -1.53 -11.47 16 22 C 0.06 1.89 4.67 86.31 0.40 2.29 16 23 H 0.06 2.21 6.74 -2.39 -0.02 2.19 16 24 H 0.07 2.01 6.43 -2.39 -0.02 2.00 16 25 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 26 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 27 H 0.00 -0.06 6.05 -2.38 -0.01 -0.07 16 28 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 29 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.07 2.85 5.93 -2.39 -0.01 2.84 16 31 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 2.53 8.04 -2.39 -0.02 2.51 16 33 H 0.10 2.05 5.96 -2.38 -0.01 2.04 16 34 H 0.06 1.34 7.97 -2.39 -0.02 1.32 16 35 H 0.01 0.39 8.00 -2.38 -0.02 0.37 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.40 2.86 9.12 -74.06 -0.68 2.18 16 39 H 0.09 2.49 6.26 -2.39 -0.01 2.47 16 40 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 Total: -1.00 -67.12 304.05 -2.67 -69.79 By element: Atomic # 1 Polarization: 8.91 SS G_CDS: 0.33 Total: 9.25 kcal Atomic # 6 Polarization: -17.30 SS G_CDS: 4.49 Total: -12.81 kcal Atomic # 7 Polarization: -93.20 SS G_CDS: -7.99 Total: -101.18 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -1.53 Total: -11.47 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -67.12 -2.67 -69.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687590142.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.010 kcal (2) G-P(sol) polarization free energy of solvation -67.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds