Wall clock time and date at job start Mon Mar 30 2020 04:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46800 * 2 1 4 4 C 1.52998 * 109.47392 * 120.00205 * 2 1 3 5 5 C 1.50696 * 109.47409 * 185.00157 * 4 2 1 6 6 H 1.08000 * 119.99837 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00612 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99387 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00349 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46908 * 90.00302 * 9 7 5 11 11 H 1.48501 * 109.47021 * 209.99666 * 9 7 5 12 12 H 1.48498 * 109.47151 * 330.00010 * 9 7 5 13 13 N 1.46895 * 109.47254 * 240.00354 * 2 1 3 14 14 C 1.46966 * 110.99911 * 306.04371 * 13 2 1 15 15 C 1.53048 * 109.37873 * 183.19820 * 14 13 2 16 16 N 1.46956 * 109.36771 * 301.58579 * 15 14 13 17 17 C 1.46900 * 110.99918 * 183.19313 * 16 15 14 18 18 C 1.46953 * 110.87974 * 59.32150 * 16 15 14 19 19 H 1.09008 * 109.48790 * 60.67148 * 18 16 15 20 20 C 1.52996 * 109.48908 * 180.71144 * 18 16 15 21 21 O 1.42899 * 109.47380 * 293.06431 * 20 18 16 22 22 C 1.47003 * 111.03002 * 69.83069 * 13 2 1 23 23 H 1.09002 * 109.46940 * 299.99329 * 1 2 3 24 24 H 1.08994 * 109.47398 * 59.99849 * 1 2 3 25 25 H 1.09005 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47335 * 305.00108 * 4 2 1 27 27 H 1.08996 * 109.47178 * 64.99640 * 4 2 1 28 28 H 0.97005 * 119.99721 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.48588 * 63.22195 * 14 13 2 30 30 H 1.08991 * 109.48896 * 303.17796 * 14 13 2 31 31 H 1.08997 * 109.48991 * 61.56167 * 15 14 13 32 32 H 1.09011 * 109.48408 * 181.59892 * 15 14 13 33 33 H 1.08995 * 109.47080 * 49.32067 * 17 16 15 34 34 H 1.09004 * 109.47002 * 169.31699 * 17 16 15 35 35 H 1.08998 * 109.46981 * 289.31767 * 17 16 15 36 36 H 1.08997 * 109.47195 * 53.06662 * 20 18 16 37 37 H 1.09006 * 109.46821 * 173.06656 * 20 18 16 38 38 H 0.96696 * 114.00342 * 180.02562 * 21 20 18 39 39 H 1.08994 * 109.48061 * 56.85675 * 22 13 2 40 40 H 1.08999 * 109.50113 * 296.80423 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2306 -1.1935 2.3577 8 7 3.5766 -1.8379 3.2994 9 14 6.0923 -1.0622 2.4359 10 1 6.4710 0.1599 3.1897 11 1 6.6444 -2.2579 3.1221 12 1 6.6413 -0.9844 1.0584 13 7 2.0197 -0.6924 -1.1994 14 6 1.4341 -2.0360 -1.3079 15 6 2.0284 -2.7524 -2.5228 16 7 1.7582 -1.9645 -3.7335 17 6 2.2478 -2.6574 -4.9327 18 6 2.3437 -0.6210 -3.6256 19 1 3.4242 -0.7036 -3.5069 20 6 2.0289 0.1764 -4.8928 21 8 2.7154 -0.4040 -6.0037 22 6 1.7495 0.0956 -2.4107 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6055 -0.2618 2.1370 27 1 1.7517 -1.7715 1.2055 28 1 4.0610 -2.2447 4.0348 29 1 0.3538 -1.9532 -1.4269 30 1 1.6580 -2.6042 -0.4052 31 1 3.1051 -2.8593 -2.3912 32 1 1.5743 -3.7385 -2.6214 33 1 1.8967 -3.6893 -4.9248 34 1 1.8721 -2.1526 -5.8228 35 1 3.3376 -2.6445 -4.9403 36 1 0.9550 0.1551 -5.0781 37 1 2.3549 1.2084 -4.7631 38 1 2.5619 0.0516 -6.8426 39 1 2.2038 1.0814 -2.3118 40 1 0.6728 0.2028 -2.5424 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687590144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:19 Heat of formation + Delta-G solvation = -36.766346 kcal Electronic energy + Delta-G solvation = -18815.309371 eV Core-core repulsion = 16051.182326 eV Total energy + Delta-G solvation = -2764.127045 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.47518 -37.13274 -35.48512 -32.78588 -31.52620 -30.69563 -27.66417 -27.15449 -25.34408 -23.63609 -22.70623 -22.19953 -19.69298 -18.58725 -17.35175 -16.15974 -16.03893 -15.45815 -14.75307 -14.49991 -14.38271 -14.00317 -13.65314 -13.22784 -13.03124 -12.78464 -12.28123 -12.04751 -11.81752 -11.62112 -11.49580 -11.23062 -11.08994 -10.74335 -10.57901 -10.52328 -10.38593 -10.19595 -9.88651 -9.81650 -9.15486 -8.95458 -8.24410 -8.07998 -7.44287 -5.87455 -3.85020 3.39629 3.45857 3.51282 4.04879 4.16099 4.57451 4.69565 5.09940 5.26443 5.29701 5.45788 5.50130 5.56591 5.64000 5.77595 5.78357 5.80613 5.90049 5.92681 5.99852 6.02121 6.11181 6.27348 6.33687 6.42640 6.49613 6.63222 6.73156 7.00562 7.28586 7.32649 7.51462 7.56941 7.70175 7.92306 8.04249 8.14192 8.59896 9.20765 9.76562 11.24504 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.006674 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.191166 B = 4194.393336 C = 4573.900068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.069 0.931 4 C 0.030 3.970 5 C -0.489 4.489 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.290 1.290 12 H -0.275 1.275 13 N -0.511 5.511 14 C 0.057 3.943 15 C 0.056 3.944 16 N -0.539 5.539 17 C 0.030 3.970 18 C 0.088 3.912 19 H 0.056 0.944 20 C 0.083 3.917 21 O -0.567 6.567 22 C 0.062 3.938 23 H 0.055 0.945 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.257 0.743 29 H 0.034 0.966 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.023 0.977 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.371 0.629 39 H 0.073 0.927 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.487 2.407 -15.731 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.020 4.020 3 H 0.087 0.913 4 C -0.007 4.007 5 C -0.528 4.528 6 H 0.077 0.923 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.210 1.210 11 H -0.216 1.216 12 H -0.200 1.200 13 N -0.234 5.234 14 C -0.071 4.071 15 C -0.072 4.072 16 N -0.264 5.264 17 C -0.118 4.118 18 C -0.021 4.021 19 H 0.074 0.926 20 C 0.005 3.995 21 O -0.373 6.373 22 C -0.067 4.067 23 H 0.074 0.926 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.110 0.890 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.218 0.782 39 H 0.091 0.909 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.237 1.893 -15.093 16.087 hybrid contribution 0.870 0.395 -0.248 0.987 sum -4.367 2.288 -15.340 16.113 Atomic orbital electron populations 1.22512 0.99647 1.01450 1.00605 1.21912 0.90154 0.98277 0.91688 0.91302 1.19197 0.96329 0.95385 0.89786 1.21166 0.91826 1.32903 1.06895 0.92256 1.25000 0.97960 0.95893 0.96031 1.69966 1.35182 1.36974 1.12353 0.86647 0.86480 0.77213 0.77956 1.21003 1.21560 1.19983 1.62253 1.58333 1.01877 1.00959 1.22177 0.96081 0.91026 0.97808 1.22214 0.99643 0.96107 0.89197 1.62252 1.58517 1.02515 1.03145 1.22475 0.98003 0.97706 0.93620 1.21668 0.98221 0.89396 0.92821 0.92632 1.22186 0.95845 0.95376 0.86123 1.86641 1.73863 1.57728 1.19020 1.22044 0.98221 0.96710 0.89726 0.92581 0.94132 0.92732 0.96303 0.96248 0.93341 0.94761 0.89031 0.93908 0.90946 0.93022 0.89740 0.95831 0.92924 0.93162 0.78197 0.90886 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.18 8.44 37.16 0.31 -2.87 16 2 C 0.09 1.79 2.26 -67.72 -0.15 1.64 16 3 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 4 C 0.03 0.76 4.37 -27.89 -0.12 0.64 16 5 C -0.49 -13.79 8.84 -34.44 -0.30 -14.09 16 6 H 0.06 1.68 7.74 -52.49 -0.41 1.27 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 8 N -0.90 -27.34 13.29 55.43 0.74 -26.61 16 9 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 12 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.51 -9.91 4.38 -226.45 -0.99 -10.90 16 14 C 0.06 1.05 4.75 -3.76 -0.02 1.03 16 15 C 0.06 0.94 5.61 -3.77 -0.02 0.91 16 16 N -0.54 -8.26 4.78 -234.73 -1.12 -9.38 16 17 C 0.03 0.41 8.33 60.06 0.50 0.91 16 18 C 0.09 1.33 2.38 -67.66 -0.16 1.17 16 19 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 20 C 0.08 0.96 6.35 37.16 0.24 1.20 16 21 O -0.57 -6.16 10.26 -35.23 -0.36 -6.52 16 22 C 0.06 1.00 4.62 -3.74 -0.02 0.98 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.63 6.75 -51.93 -0.35 0.28 16 25 H 0.05 0.95 6.40 -51.93 -0.33 0.62 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.52 6.28 -51.93 -0.33 0.19 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.03 0.61 6.41 -51.93 -0.33 0.27 16 30 H 0.09 1.89 6.24 -51.93 -0.32 1.57 16 31 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 1.07 8.07 -51.92 -0.42 0.66 16 33 H 0.05 0.64 8.01 -51.93 -0.42 0.23 16 34 H 0.08 1.07 5.79 -51.93 -0.30 0.77 16 35 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.37 2.24 9.12 45.56 0.42 2.65 16 39 H 0.07 1.12 8.07 -51.93 -0.42 0.70 16 40 H 0.04 0.55 6.76 -51.93 -0.35 0.20 16 LS Contribution 303.88 15.07 4.58 4.58 Total: -1.00 -31.26 303.88 -8.10 -39.36 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.07 Total: -0.68 kcal Atomic # 6 Polarization: -7.27 SS G_CDS: 0.16 Total: -7.12 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -1.38 Total: -46.89 kcal Atomic # 8 Polarization: -6.16 SS G_CDS: -0.36 Total: -6.52 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.26 -8.10 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687590144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.593 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds