Wall clock time and date at job start Mon Mar 30 2020 04:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46800 * 2 1 4 4 C 1.52998 * 109.47392 * 120.00205 * 2 1 3 5 5 C 1.50696 * 109.47409 * 185.00157 * 4 2 1 6 6 H 1.08000 * 119.99837 * 359.97438 * 5 4 2 7 7 C 1.37877 * 120.00612 * 180.02562 * 5 4 2 8 8 N 1.31519 * 119.99387 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00349 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46908 * 90.00302 * 9 7 5 11 11 H 1.48501 * 109.47021 * 209.99666 * 9 7 5 12 12 H 1.48498 * 109.47151 * 330.00010 * 9 7 5 13 13 N 1.46895 * 109.47254 * 240.00354 * 2 1 3 14 14 C 1.46966 * 110.99911 * 306.04371 * 13 2 1 15 15 C 1.53048 * 109.37873 * 183.19820 * 14 13 2 16 16 N 1.46956 * 109.36771 * 301.58579 * 15 14 13 17 17 C 1.46900 * 110.99918 * 183.19313 * 16 15 14 18 18 C 1.46953 * 110.87974 * 59.32150 * 16 15 14 19 19 H 1.09008 * 109.48790 * 60.67148 * 18 16 15 20 20 C 1.52996 * 109.48908 * 180.71144 * 18 16 15 21 21 O 1.42899 * 109.47380 * 293.06431 * 20 18 16 22 22 C 1.47003 * 111.03002 * 69.83069 * 13 2 1 23 23 H 1.09002 * 109.46940 * 299.99329 * 1 2 3 24 24 H 1.08994 * 109.47398 * 59.99849 * 1 2 3 25 25 H 1.09005 * 109.46952 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47335 * 305.00108 * 4 2 1 27 27 H 1.08996 * 109.47178 * 64.99640 * 4 2 1 28 28 H 0.97005 * 119.99721 * 180.02562 * 8 7 5 29 29 H 1.09004 * 109.48588 * 63.22195 * 14 13 2 30 30 H 1.08991 * 109.48896 * 303.17796 * 14 13 2 31 31 H 1.08997 * 109.48991 * 61.56167 * 15 14 13 32 32 H 1.09011 * 109.48408 * 181.59892 * 15 14 13 33 33 H 1.08995 * 109.47080 * 49.32067 * 17 16 15 34 34 H 1.09004 * 109.47002 * 169.31699 * 17 16 15 35 35 H 1.08998 * 109.46981 * 289.31767 * 17 16 15 36 36 H 1.08997 * 109.47195 * 53.06662 * 20 18 16 37 37 H 1.09006 * 109.46821 * 173.06656 * 20 18 16 38 38 H 0.96696 * 114.00342 * 180.02562 * 21 20 18 39 39 H 1.08994 * 109.48061 * 56.85675 * 22 13 2 40 40 H 1.08999 * 109.50113 * 296.80423 * 22 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 1 4.0790 -0.0861 0.5392 7 6 4.2306 -1.1935 2.3577 8 7 3.5766 -1.8379 3.2994 9 14 6.0923 -1.0622 2.4359 10 1 6.4710 0.1599 3.1897 11 1 6.6444 -2.2579 3.1221 12 1 6.6413 -0.9844 1.0584 13 7 2.0197 -0.6924 -1.1994 14 6 1.4341 -2.0360 -1.3079 15 6 2.0284 -2.7524 -2.5228 16 7 1.7582 -1.9645 -3.7335 17 6 2.2478 -2.6574 -4.9327 18 6 2.3437 -0.6210 -3.6256 19 1 3.4242 -0.7036 -3.5069 20 6 2.0289 0.1764 -4.8928 21 8 2.7154 -0.4040 -6.0037 22 6 1.7495 0.0956 -2.4107 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6055 -0.2618 2.1370 27 1 1.7517 -1.7715 1.2055 28 1 4.0610 -2.2447 4.0348 29 1 0.3538 -1.9532 -1.4269 30 1 1.6580 -2.6042 -0.4052 31 1 3.1051 -2.8593 -2.3912 32 1 1.5743 -3.7385 -2.6214 33 1 1.8967 -3.6893 -4.9248 34 1 1.8721 -2.1526 -5.8228 35 1 3.3376 -2.6445 -4.9403 36 1 0.9550 0.1551 -5.0781 37 1 2.3549 1.2084 -4.7631 38 1 2.5619 0.0516 -6.8426 39 1 2.2038 1.0814 -2.3118 40 1 0.6728 0.2028 -2.5424 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687590144.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:18 Heat of formation + Delta-G solvation = -61.623601 kcal Electronic energy + Delta-G solvation = -18816.387262 eV Core-core repulsion = 16051.182326 eV Total energy + Delta-G solvation = -2765.204937 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78904 -38.32328 -36.67291 -34.83880 -32.86699 -32.22404 -29.38961 -28.62593 -26.50310 -25.31432 -24.24250 -23.61590 -21.04759 -20.10689 -18.37356 -18.20727 -17.27585 -16.77210 -16.51484 -16.05079 -15.67772 -15.44864 -14.92939 -14.73201 -14.19264 -14.06224 -13.87509 -13.63633 -13.38703 -13.13800 -12.97596 -12.70600 -12.53308 -12.45702 -12.41209 -12.06716 -11.90724 -11.62291 -11.46782 -11.09976 -10.96609 -10.70439 -10.48092 -9.34640 -8.91991 -8.10890 -6.15240 1.39315 1.40404 1.51623 2.45904 2.93565 2.96452 3.23942 3.52191 3.91610 4.09588 4.16030 4.28093 4.35702 4.38570 4.42690 4.51898 4.53708 4.62969 4.67327 4.71436 4.72613 4.83539 4.96786 4.99945 5.07519 5.14619 5.22604 5.28482 5.31703 5.49338 5.69622 5.89393 6.06230 6.10683 6.32648 6.41495 6.52972 6.96566 6.98313 7.50259 9.01060 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025444 B = 0.006674 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.191166 B = 4194.393336 C = 4573.900068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 H 0.067 0.933 4 C 0.036 3.964 5 C -0.499 4.499 6 H 0.054 0.946 7 C -0.004 4.004 8 N -0.938 5.938 9 Si 0.954 3.046 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.536 5.536 14 C 0.064 3.936 15 C 0.062 3.938 16 N -0.536 5.536 17 C 0.035 3.965 18 C 0.086 3.914 19 H 0.024 0.976 20 C 0.093 3.907 21 O -0.582 6.582 22 C 0.066 3.934 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.050 0.950 26 H -0.006 1.006 27 H -0.003 1.003 28 H 0.259 0.741 29 H 0.046 0.954 30 H 0.058 0.942 31 H 0.017 0.983 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.008 0.992 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.395 0.605 39 H 0.080 0.920 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 3.283 -17.840 19.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 H 0.085 0.915 4 C -0.001 4.001 5 C -0.537 4.537 6 H 0.072 0.928 7 C -0.200 4.200 8 N -0.581 5.581 9 Si 0.780 3.220 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.197 1.197 13 N -0.260 5.260 14 C -0.064 4.064 15 C -0.066 4.066 16 N -0.261 5.261 17 C -0.113 4.113 18 C -0.023 4.023 19 H 0.042 0.958 20 C 0.015 3.985 21 O -0.391 6.391 22 C -0.063 4.063 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.012 0.988 27 H 0.015 0.985 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.109 0.891 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.026 0.974 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.245 0.755 39 H 0.098 0.902 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.572 2.787 -17.237 18.328 hybrid contribution 0.973 0.113 0.371 1.047 sum -4.599 2.900 -16.866 17.720 Atomic orbital electron populations 1.22363 0.96974 1.01676 1.02044 1.21612 0.92232 0.97182 0.90193 0.91521 1.19052 0.95074 0.94435 0.91552 1.21469 0.93375 1.32362 1.06525 0.92771 1.25820 1.02687 0.95687 0.95805 1.70089 1.36988 1.37970 1.13018 0.85614 0.80867 0.77513 0.78011 1.19909 1.21175 1.19671 1.62122 1.59293 1.02621 1.01927 1.22032 0.96736 0.90471 0.97146 1.22131 0.97973 0.97085 0.89449 1.62319 1.58269 1.02596 1.02911 1.22502 0.97030 0.98476 0.93280 1.21703 0.96176 0.89850 0.94584 0.95831 1.22012 0.96589 0.95183 0.84729 1.86567 1.73917 1.58501 1.20090 1.22075 0.99183 0.96563 0.88440 0.92308 0.91457 0.93088 0.98772 0.98491 0.93260 0.93608 0.92401 0.96500 0.89127 0.91878 0.88212 0.97366 0.91583 0.91505 0.75480 0.90161 0.93204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.75 8.44 71.98 0.61 -5.14 16 2 C 0.10 3.93 2.26 44.92 0.10 4.03 16 3 H 0.07 2.74 8.03 -2.39 -0.02 2.72 16 4 C 0.04 1.89 4.37 29.85 0.13 2.02 16 5 C -0.50 -28.78 8.84 25.60 0.23 -28.55 16 6 H 0.05 3.12 7.74 -2.91 -0.02 3.09 16 7 C 0.00 -0.23 5.46 84.65 0.46 0.23 16 8 N -0.94 -58.13 13.29 21.45 0.28 -57.84 16 9 Si 0.95 46.32 29.54 68.60 2.03 48.34 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.27 -12.96 7.11 99.48 0.71 -12.26 16 13 N -0.54 -20.71 4.38 -870.36 -3.81 -24.52 16 14 C 0.06 2.38 4.75 86.31 0.41 2.79 16 15 C 0.06 2.04 5.61 86.31 0.48 2.53 16 16 N -0.54 -15.51 4.78 -896.55 -4.29 -19.80 16 17 C 0.03 0.87 8.33 127.69 1.06 1.93 16 18 C 0.09 2.47 2.38 44.92 0.11 2.58 16 19 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 20 C 0.09 1.87 6.35 71.98 0.46 2.32 16 21 O -0.58 -10.87 10.26 -148.98 -1.53 -12.39 16 22 C 0.07 2.00 4.62 86.30 0.40 2.39 16 23 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 1.90 6.75 -2.39 -0.02 1.88 16 25 H 0.05 1.73 6.40 -2.38 -0.02 1.72 16 26 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 27 H 0.00 -0.18 6.28 -2.39 -0.01 -0.19 16 28 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 29 H 0.05 1.57 6.41 -2.39 -0.02 1.56 16 30 H 0.06 2.51 6.24 -2.39 -0.01 2.49 16 31 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 2.61 8.07 -2.38 -0.02 2.59 16 33 H 0.06 1.43 8.01 -2.39 -0.02 1.41 16 34 H 0.10 2.23 5.79 -2.38 -0.01 2.22 16 35 H 0.01 0.22 8.09 -2.39 -0.02 0.20 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.39 3.33 9.12 -74.06 -0.68 2.66 16 39 H 0.08 2.31 8.07 -2.39 -0.02 2.29 16 40 H 0.05 1.39 6.76 -2.39 -0.02 1.37 16 Total: -1.00 -68.14 303.88 -2.53 -70.67 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.33 Total: 8.41 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: 4.45 Total: -12.87 kcal Atomic # 7 Polarization: -94.35 SS G_CDS: -7.81 Total: -102.17 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.53 Total: -12.39 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.34 kcal Total: -68.14 -2.53 -70.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687590144.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.051 kcal (2) G-P(sol) polarization free energy of solvation -68.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds