Wall clock time and date at job start Mon Mar 30 2020 03:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.45319 * 2 1 4 4 C 1.53037 * 109.46392 * 240.02314 * 2 1 3 5 5 C 1.53120 * 109.27839 * 180.80376 * 4 2 1 6 6 C 1.53122 * 109.15747 * 57.65485 * 5 4 2 7 7 H 1.09003 * 109.50429 * 62.29063 * 6 5 4 8 8 N 1.46899 * 109.53382 * 182.37895 * 6 5 4 9 9 C 1.53028 * 109.28264 * 302.34500 * 6 5 4 10 10 N 1.46845 * 109.46138 * 119.97255 * 2 1 3 11 11 C 1.46908 * 110.99915 * 305.85555 * 10 2 1 12 12 C 1.52999 * 109.46776 * 301.83606 * 11 10 2 13 13 O 1.42898 * 109.47174 * 65.00267 * 12 11 10 14 14 C 1.42906 * 113.99824 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46706 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 H 1.08999 * 109.47274 * 300.02997 * 1 2 3 24 24 H 1.09004 * 109.46746 * 60.02834 * 1 2 3 25 25 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.49853 * 60.86366 * 4 2 1 27 27 H 1.09003 * 109.53369 * 300.76576 * 4 2 1 28 28 H 1.08998 * 109.52530 * 297.75451 * 5 4 2 29 29 H 1.09000 * 109.57499 * 177.58967 * 5 4 2 30 30 H 1.00898 * 111.00601 * 299.82608 * 8 6 5 31 31 H 1.00900 * 110.99375 * 63.78065 * 8 6 5 32 32 H 1.09004 * 109.46171 * 299.16525 * 9 6 5 33 33 H 1.09002 * 109.46660 * 179.19467 * 9 6 5 34 34 H 1.09003 * 109.47076 * 181.83921 * 11 10 2 35 35 H 1.08993 * 109.47323 * 61.83376 * 11 10 2 36 36 H 1.09002 * 109.47561 * 304.99666 * 12 11 10 37 37 H 1.09008 * 109.47150 * 184.99785 * 12 11 10 38 38 H 1.09000 * 109.47141 * 60.00107 * 14 13 12 39 39 H 1.08993 * 109.47732 * 299.99746 * 14 13 12 40 40 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7209 -1.2499 5 6 3.5710 -0.7361 -1.2355 6 6 4.0548 -1.4187 0.0469 7 1 3.7125 -2.4536 0.0597 8 7 5.5226 -1.3872 0.0965 9 6 3.4865 -0.6777 1.2592 10 7 2.0193 -0.6917 1.1994 11 6 1.4372 -0.1105 2.4166 12 6 1.7844 1.3779 2.4873 13 8 1.1573 2.0654 1.4029 14 6 1.4186 3.4701 1.3764 15 6 0.7126 4.0902 0.1981 16 1 0.1231 3.4734 -0.4640 17 6 0.8195 5.4450 -0.0345 18 7 0.2030 5.9862 -1.0625 19 14 1.8397 6.5118 1.1102 20 1 0.9808 7.0202 2.2097 21 1 2.9486 5.7056 1.6808 22 1 2.4008 7.6575 0.3502 23 1 -0.3634 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8903 25 1 -0.3634 -1.0277 0.0005 26 1 1.6895 -0.1982 -2.1399 27 1 1.6659 -1.7448 -1.2582 28 1 3.9457 0.2870 -1.2671 29 1 3.9390 -1.2857 -2.1019 30 1 5.9217 -1.8705 -0.6942 31 1 5.8622 -0.4385 0.1494 32 1 3.8403 0.3533 1.2532 33 1 3.8174 -1.1698 2.1737 34 1 1.8412 -0.6198 3.2915 35 1 0.3541 -0.2302 2.3943 36 1 2.8652 1.5026 2.4201 37 1 1.4293 1.7894 3.4322 38 1 2.4917 3.6385 1.2863 39 1 1.0556 3.9247 2.2981 40 1 0.2778 6.9395 -1.2260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690879067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:33 Heat of formation + Delta-G solvation = -46.862855 kcal Electronic energy + Delta-G solvation = -18930.240307 eV Core-core repulsion = 16165.675445 eV Total energy + Delta-G solvation = -2764.564863 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.59616 -36.93231 -34.82104 -32.90649 -32.46444 -29.77536 -28.97311 -27.43827 -25.41856 -23.77457 -22.11182 -21.62670 -20.68124 -19.18481 -16.91801 -16.39216 -15.95332 -15.60064 -14.92991 -14.66791 -14.38037 -13.97035 -13.83056 -13.59738 -13.13310 -12.68598 -12.40095 -12.33397 -11.91381 -11.69446 -11.41840 -11.38855 -10.99481 -10.85860 -10.82988 -10.64611 -10.56633 -10.39178 -9.92869 -9.90369 -9.23360 -8.85967 -8.70208 -8.51907 -7.76861 -6.16758 -4.15819 3.19810 3.27323 3.28210 4.03845 4.30504 4.63100 4.68802 4.92893 5.00658 5.14827 5.25061 5.37257 5.50025 5.55592 5.61551 5.71818 5.78258 5.84079 5.92146 6.05193 6.08646 6.15117 6.20877 6.27694 6.29846 6.41895 6.51341 6.59408 6.86804 6.91731 6.96450 7.06955 7.33838 7.47534 7.51120 7.57038 7.93307 8.59017 8.94342 9.42862 10.96033 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.006666 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.470935 B = 4199.474922 C = 4249.868568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.073 3.927 3 H 0.088 0.912 4 C -0.109 4.109 5 C -0.154 4.154 6 C 0.095 3.905 7 H 0.085 0.915 8 N -0.847 5.847 9 C 0.061 3.939 10 N -0.529 5.529 11 C 0.058 3.942 12 C 0.018 3.982 13 O -0.365 6.365 14 C 0.164 3.836 15 C -0.516 4.516 16 H 0.083 0.917 17 C 0.073 3.927 18 N -0.894 5.894 19 Si 0.874 3.126 20 H -0.274 1.274 21 H -0.268 1.268 22 H -0.282 1.282 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.041 0.959 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.340 0.660 31 H 0.338 0.662 32 H 0.033 0.967 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.037 0.963 37 H 0.041 0.959 38 H -0.001 1.001 39 H -0.003 1.003 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -13.293 3.597 15.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.034 4.034 3 H 0.105 0.895 4 C -0.147 4.147 5 C -0.194 4.194 6 C -0.016 4.016 7 H 0.103 0.897 8 N -0.375 5.375 9 C -0.067 4.067 10 N -0.254 5.254 11 C -0.071 4.071 12 C -0.062 4.062 13 O -0.284 6.284 14 C 0.089 3.911 15 C -0.554 4.554 16 H 0.101 0.899 17 C -0.129 4.129 18 N -0.532 5.532 19 Si 0.701 3.299 20 H -0.199 1.199 21 H -0.193 1.193 22 H -0.208 1.208 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.152 0.848 31 H 0.150 0.850 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 6.370 -14.110 4.012 15.993 hybrid contribution 0.920 2.355 -0.111 2.531 sum 7.291 -11.756 3.901 14.372 Atomic orbital electron populations 1.21742 0.94255 0.99884 1.03003 1.21929 0.95988 0.97757 0.87748 0.89490 1.21595 0.94118 1.00854 0.98156 1.22433 0.97755 1.00924 0.98246 1.21428 0.86637 1.00075 0.93505 0.89677 1.58898 1.06860 1.21873 1.49831 1.21989 0.88208 0.98494 0.98048 1.62110 1.05859 1.54767 1.02651 1.22303 1.01527 0.90668 0.92569 1.23115 0.96770 0.94553 0.91717 1.88081 1.72685 1.21867 1.45808 1.20612 0.95143 0.78206 0.97166 1.20856 1.31067 0.93300 1.10184 0.89874 1.24762 0.95394 0.97472 0.95264 1.69872 1.42945 1.12234 1.28195 0.86883 0.81133 0.80613 0.81299 1.19943 1.19283 1.20791 0.91195 0.92617 0.94024 0.91640 0.91963 0.92168 0.92496 0.84763 0.84952 0.94866 0.90740 0.90320 0.89460 0.94478 0.94089 0.98366 0.98554 0.92371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.22 8.20 37.16 0.30 -1.91 16 2 C 0.07 1.21 1.77 -67.72 -0.12 1.09 16 3 H 0.09 1.78 5.58 -51.93 -0.29 1.49 16 4 C -0.11 -1.57 5.37 -26.65 -0.14 -1.72 16 5 C -0.15 -1.99 5.58 -26.61 -0.15 -2.14 16 6 C 0.10 1.17 3.41 -67.64 -0.23 0.94 16 7 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 8 N -0.85 -9.06 9.26 -4.60 -0.04 -9.10 16 9 C 0.06 0.84 4.60 -3.84 -0.02 0.83 16 10 N -0.53 -7.86 4.69 -226.69 -1.06 -8.92 16 11 C 0.06 0.83 5.51 -3.82 -0.02 0.81 16 12 C 0.02 0.30 5.75 37.16 0.21 0.51 16 13 O -0.37 -7.85 5.16 -35.23 -0.18 -8.03 16 14 C 0.16 4.04 4.76 36.01 0.17 4.21 16 15 C -0.52 -14.85 9.99 -34.44 -0.34 -15.19 16 16 H 0.08 2.60 8.06 -52.49 -0.42 2.18 16 17 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 18 N -0.89 -27.18 13.96 55.43 0.77 -26.40 16 19 Si 0.87 21.27 27.47 -169.99 -4.67 16.60 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H 0.07 1.27 5.18 -51.93 -0.27 1.00 16 24 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.34 3.05 9.04 -39.29 -0.36 2.69 16 31 H 0.34 3.53 8.98 -39.29 -0.35 3.17 16 32 H 0.03 0.51 6.65 -51.93 -0.35 0.17 16 33 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 34 H 0.08 0.96 8.06 -51.93 -0.42 0.54 16 35 H 0.09 1.28 6.32 -51.93 -0.33 0.95 16 36 H 0.04 0.63 6.46 -51.93 -0.34 0.30 16 37 H 0.04 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.00 -0.03 7.20 -51.93 -0.37 -0.41 16 39 H 0.00 -0.08 7.57 -51.93 -0.39 -0.47 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 302.30 15.07 4.56 4.56 Total: -1.00 -29.69 302.30 -7.91 -37.60 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -6.85 Total: 4.26 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: -0.43 Total: -10.56 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.33 Total: -44.43 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.18 Total: -8.03 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.69 -7.91 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690879067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.263 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds