Wall clock time and date at job start Mon Mar 30 2020 03:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.45319 * 2 1 4 4 C 1.53037 * 109.46392 * 240.02314 * 2 1 3 5 5 C 1.53120 * 109.27839 * 180.80376 * 4 2 1 6 6 C 1.53122 * 109.15747 * 57.65485 * 5 4 2 7 7 H 1.09003 * 109.50429 * 62.29063 * 6 5 4 8 8 N 1.46899 * 109.53382 * 182.37895 * 6 5 4 9 9 C 1.53028 * 109.28264 * 302.34500 * 6 5 4 10 10 N 1.46845 * 109.46138 * 119.97255 * 2 1 3 11 11 C 1.46908 * 110.99915 * 305.85555 * 10 2 1 12 12 C 1.52999 * 109.46776 * 301.83606 * 11 10 2 13 13 O 1.42898 * 109.47174 * 65.00267 * 12 11 10 14 14 C 1.42906 * 113.99824 * 179.97438 * 13 12 11 15 15 C 1.50706 * 109.46706 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 H 1.08999 * 109.47274 * 300.02997 * 1 2 3 24 24 H 1.09004 * 109.46746 * 60.02834 * 1 2 3 25 25 H 1.09000 * 109.47273 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.49853 * 60.86366 * 4 2 1 27 27 H 1.09003 * 109.53369 * 300.76576 * 4 2 1 28 28 H 1.08998 * 109.52530 * 297.75451 * 5 4 2 29 29 H 1.09000 * 109.57499 * 177.58967 * 5 4 2 30 30 H 1.00898 * 111.00601 * 299.82608 * 8 6 5 31 31 H 1.00900 * 110.99375 * 63.78065 * 8 6 5 32 32 H 1.09004 * 109.46171 * 299.16525 * 9 6 5 33 33 H 1.09002 * 109.46660 * 179.19467 * 9 6 5 34 34 H 1.09003 * 109.47076 * 181.83921 * 11 10 2 35 35 H 1.08993 * 109.47323 * 61.83376 * 11 10 2 36 36 H 1.09002 * 109.47561 * 304.99666 * 12 11 10 37 37 H 1.09008 * 109.47150 * 184.99785 * 12 11 10 38 38 H 1.09000 * 109.47141 * 60.00107 * 14 13 12 39 39 H 1.08993 * 109.47732 * 299.99746 * 14 13 12 40 40 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0400 -0.7209 -1.2499 5 6 3.5710 -0.7361 -1.2355 6 6 4.0548 -1.4187 0.0469 7 1 3.7125 -2.4536 0.0597 8 7 5.5226 -1.3872 0.0965 9 6 3.4865 -0.6777 1.2592 10 7 2.0193 -0.6917 1.1994 11 6 1.4372 -0.1105 2.4166 12 6 1.7844 1.3779 2.4873 13 8 1.1573 2.0654 1.4029 14 6 1.4186 3.4701 1.3764 15 6 0.7126 4.0902 0.1981 16 1 0.1231 3.4734 -0.4640 17 6 0.8195 5.4450 -0.0345 18 7 0.2030 5.9862 -1.0625 19 14 1.8397 6.5118 1.1102 20 1 0.9808 7.0202 2.2097 21 1 2.9486 5.7056 1.6808 22 1 2.4008 7.6575 0.3502 23 1 -0.3634 0.5143 0.8897 24 1 -0.3633 0.5134 -0.8903 25 1 -0.3634 -1.0277 0.0005 26 1 1.6895 -0.1982 -2.1399 27 1 1.6659 -1.7448 -1.2582 28 1 3.9457 0.2870 -1.2671 29 1 3.9390 -1.2857 -2.1019 30 1 5.9217 -1.8705 -0.6942 31 1 5.8622 -0.4385 0.1494 32 1 3.8403 0.3533 1.2532 33 1 3.8174 -1.1698 2.1737 34 1 1.8412 -0.6198 3.2915 35 1 0.3541 -0.2302 2.3943 36 1 2.8652 1.5026 2.4201 37 1 1.4293 1.7894 3.4322 38 1 2.4917 3.6385 1.2863 39 1 1.0556 3.9247 2.2981 40 1 0.2778 6.9395 -1.2260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690879067.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:32 Heat of formation + Delta-G solvation = -69.403564 kcal Electronic energy + Delta-G solvation = -18931.217746 eV Core-core repulsion = 16165.675445 eV Total energy + Delta-G solvation = -2765.542301 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.83749 -38.44518 -36.04150 -34.84091 -33.90958 -30.99502 -30.55532 -29.11232 -26.63498 -25.00662 -24.05690 -22.99744 -21.79428 -20.46770 -19.02337 -17.63429 -17.54525 -16.88415 -16.39318 -16.06426 -15.88801 -15.39542 -15.03614 -14.85163 -14.71332 -14.32633 -13.82724 -13.61039 -13.28314 -13.18420 -13.02746 -12.75587 -12.64184 -12.44757 -12.27188 -11.89414 -11.83565 -11.74782 -11.70896 -11.33256 -11.15508 -10.91768 -10.24813 -9.61162 -9.07354 -8.39380 -6.45957 1.28570 1.30419 1.40802 2.24996 2.83508 2.93191 3.15637 3.69350 3.83239 3.91935 4.09791 4.15544 4.26164 4.33623 4.41590 4.50436 4.55753 4.57926 4.68248 4.72359 4.76269 4.89308 4.93282 4.96827 5.03568 5.06775 5.08925 5.24934 5.28418 5.41885 5.47959 5.58408 5.91017 6.15249 6.20680 6.31190 6.57674 6.59012 6.70833 7.18119 8.77270 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025345 B = 0.006666 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.470935 B = 4199.474922 C = 4249.868568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.077 3.923 3 H 0.046 0.954 4 C -0.107 4.107 5 C -0.149 4.149 6 C 0.104 3.896 7 H 0.090 0.910 8 N -0.843 5.843 9 C 0.062 3.938 10 N -0.522 5.522 11 C 0.060 3.940 12 C 0.011 3.989 13 O -0.377 6.377 14 C 0.176 3.824 15 C -0.533 4.533 16 H 0.035 0.965 17 C 0.015 3.985 18 N -0.940 5.940 19 Si 0.949 3.051 20 H -0.260 1.260 21 H -0.252 1.252 22 H -0.274 1.274 23 H 0.053 0.947 24 H 0.033 0.967 25 H 0.062 0.938 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.077 0.923 30 H 0.352 0.648 31 H 0.340 0.660 32 H 0.015 0.985 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.040 0.960 37 H 0.054 0.946 38 H 0.000 1.000 39 H 0.005 0.995 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.469 -14.384 5.379 17.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.030 4.030 3 H 0.063 0.937 4 C -0.146 4.146 5 C -0.188 4.188 6 C -0.008 4.008 7 H 0.108 0.892 8 N -0.373 5.373 9 C -0.066 4.066 10 N -0.246 5.246 11 C -0.068 4.068 12 C -0.068 4.068 13 O -0.297 6.297 14 C 0.100 3.900 15 C -0.571 4.571 16 H 0.054 0.946 17 C -0.183 4.183 18 N -0.580 5.580 19 Si 0.771 3.229 20 H -0.185 1.185 21 H -0.175 1.175 22 H -0.199 1.199 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.081 0.919 26 H 0.071 0.929 27 H 0.095 0.905 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.166 0.834 31 H 0.153 0.847 32 H 0.034 0.966 33 H 0.107 0.893 34 H 0.131 0.869 35 H 0.103 0.897 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.018 0.982 39 H 0.023 0.977 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.104 -15.232 5.798 18.202 hybrid contribution 0.332 2.604 -0.714 2.721 sum 8.437 -12.628 5.084 16.015 Atomic orbital electron populations 1.21655 0.94849 1.00561 1.01151 1.21736 0.95500 0.96025 0.89776 0.93657 1.21559 0.95457 1.01039 0.96514 1.22409 0.96365 1.00285 0.99790 1.21305 0.87563 0.99738 0.92186 0.89181 1.58876 1.05707 1.22184 1.50510 1.22049 0.87287 0.97831 0.99478 1.62142 1.06698 1.53777 1.02028 1.22418 1.01717 0.89024 0.93638 1.23410 0.96737 0.95804 0.90811 1.88107 1.73381 1.20227 1.47958 1.20270 0.94332 0.80026 0.95364 1.21082 1.31227 0.93622 1.11201 0.94643 1.25753 0.96594 0.98933 0.97035 1.70025 1.44640 1.12994 1.30324 0.85702 0.79677 0.78479 0.79055 1.18503 1.17539 1.19916 0.92776 0.94770 0.91868 0.92873 0.90501 0.94060 0.90488 0.83408 0.84736 0.96646 0.89342 0.86948 0.89706 0.94215 0.92766 0.98211 0.97720 0.91923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.32 8.20 71.98 0.59 -3.73 16 2 C 0.08 2.60 1.77 44.94 0.08 2.67 16 3 H 0.05 1.93 5.58 -2.39 -0.01 1.92 16 4 C -0.11 -3.07 5.37 30.65 0.16 -2.91 16 5 C -0.15 -3.69 5.58 30.68 0.17 -3.52 16 6 C 0.10 2.34 3.41 44.97 0.15 2.49 16 7 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 8 N -0.84 -16.00 9.26 -168.47 -1.56 -17.56 16 9 C 0.06 1.59 4.60 86.32 0.40 1.98 16 10 N -0.52 -14.71 4.69 -871.10 -4.09 -18.80 16 11 C 0.06 1.62 5.51 86.30 0.48 2.10 16 12 C 0.01 0.35 5.75 71.98 0.41 0.77 16 13 O -0.38 -16.48 5.16 -148.98 -0.77 -17.25 16 14 C 0.18 8.71 4.76 71.24 0.34 9.05 16 15 C -0.53 -31.87 9.99 25.60 0.26 -31.61 16 16 H 0.04 2.38 8.06 -2.91 -0.02 2.35 16 17 C 0.01 0.88 5.47 84.66 0.46 1.34 16 18 N -0.94 -58.82 13.96 21.45 0.30 -58.52 16 19 Si 0.95 43.60 27.47 68.60 1.88 45.48 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.25 -10.82 6.54 99.48 0.65 -10.17 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H 0.05 2.02 5.18 -2.39 -0.01 2.01 16 24 H 0.03 1.28 8.14 -2.39 -0.02 1.27 16 25 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.35 5.35 9.04 -89.70 -0.81 4.54 16 31 H 0.34 6.45 8.98 -89.69 -0.81 5.64 16 32 H 0.02 0.45 6.65 -2.38 -0.02 0.44 16 33 H 0.09 2.05 8.06 -2.39 -0.02 2.03 16 34 H 0.11 2.33 8.06 -2.39 -0.02 2.31 16 35 H 0.08 2.36 6.32 -2.39 -0.02 2.34 16 36 H 0.04 1.30 6.46 -2.39 -0.02 1.28 16 37 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.00 0.01 7.20 -2.39 -0.02 -0.01 16 39 H 0.01 0.24 7.57 -2.39 -0.02 0.22 16 40 H 0.27 15.67 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -65.92 302.30 -1.38 -67.30 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -0.65 Total: 20.71 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: 3.50 Total: -21.36 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -5.35 Total: -94.88 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.77 Total: -17.25 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 1.88 Total: 45.48 kcal Total: -65.92 -1.38 -67.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690879067.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.106 kcal (2) G-P(sol) polarization free energy of solvation -65.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds