Wall clock time and date at job start Mon Mar 30 2020 03:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.45636 * 2 1 4 4 C 1.53040 * 109.45928 * 240.02596 * 2 1 3 5 5 C 1.53121 * 109.27900 * 180.80708 * 4 2 1 6 6 C 1.53120 * 109.16305 * 57.65145 * 5 4 2 7 7 H 1.08996 * 109.50556 * 182.40663 * 6 5 4 8 8 N 1.46902 * 109.50102 * 62.28634 * 6 5 4 9 9 C 1.53039 * 109.27682 * 302.35036 * 6 5 4 10 10 N 1.46846 * 109.46311 * 119.97312 * 2 1 3 11 11 C 1.46897 * 111.00175 * 305.85627 * 10 2 1 12 12 C 1.53006 * 109.46573 * 301.83145 * 11 10 2 13 13 O 1.42901 * 109.46804 * 65.00294 * 12 11 10 14 14 C 1.42899 * 113.99607 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.46876 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72213 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 H 1.09002 * 109.47053 * 300.02920 * 1 2 3 24 24 H 1.08997 * 109.47354 * 60.02266 * 1 2 3 25 25 H 1.08995 * 109.47633 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.50416 * 60.86585 * 4 2 1 27 27 H 1.09001 * 109.53708 * 300.76395 * 4 2 1 28 28 H 1.09003 * 109.52090 * 297.75278 * 5 4 2 29 29 H 1.08998 * 109.52475 * 177.56151 * 5 4 2 30 30 H 1.00904 * 110.99780 * 60.19915 * 8 6 5 31 31 H 1.00896 * 111.00075 * 184.14893 * 8 6 5 32 32 H 1.08999 * 109.46346 * 299.15411 * 9 6 5 33 33 H 1.09004 * 109.45821 * 179.19520 * 9 6 5 34 34 H 1.08997 * 109.47142 * 181.83672 * 11 10 2 35 35 H 1.08995 * 109.47294 * 61.83279 * 11 10 2 36 36 H 1.08995 * 109.47721 * 304.99997 * 12 11 10 37 37 H 1.09001 * 109.46499 * 184.99873 * 12 11 10 38 38 H 1.09004 * 109.47206 * 60.00168 * 14 13 12 39 39 H 1.08994 * 109.47548 * 299.99825 * 14 13 12 40 40 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5709 -0.7362 -1.2357 6 6 4.0548 -1.4189 0.0466 7 1 5.1438 -1.3948 0.0830 8 7 3.5933 -2.8135 0.0639 9 6 3.4865 -0.6777 1.2590 10 7 2.0193 -0.6917 1.1994 11 6 1.4373 -0.1106 2.4165 12 6 1.7846 1.3779 2.4873 13 8 1.1574 2.0654 1.4029 14 6 1.4187 3.4700 1.3765 15 6 0.7128 4.0902 0.1983 16 1 0.1232 3.4734 -0.4639 17 6 0.8146 5.4460 -0.0308 18 7 1.5322 6.1971 0.7757 19 14 -0.0667 6.2159 -1.4868 20 1 -1.4286 6.6398 -1.0735 21 1 0.6976 7.3982 -1.9593 22 1 -0.1698 5.2219 -2.5852 23 1 -0.3633 0.5143 0.8897 24 1 -0.3634 0.5135 -0.8901 25 1 -0.3634 -1.0276 0.0005 26 1 1.6894 -0.1982 -2.1399 27 1 1.6658 -1.7447 -1.2583 28 1 3.9456 0.2869 -1.2673 29 1 3.9378 -1.2864 -2.1021 30 1 3.9556 -3.3240 -0.7275 31 1 3.8421 -3.2660 0.9307 32 1 3.8404 0.3532 1.2531 33 1 3.8175 -1.1699 2.1735 34 1 1.8413 -0.6199 3.2914 35 1 0.3542 -0.2303 2.3943 36 1 2.8653 1.5025 2.4201 37 1 1.4295 1.7892 3.4323 38 1 2.4919 3.6383 1.2863 39 1 1.0559 3.9245 2.2983 40 1 1.6041 7.1509 0.6143 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690879069.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:36 Heat of formation + Delta-G solvation = -46.843318 kcal Electronic energy + Delta-G solvation = -18971.478195 eV Core-core repulsion = 16206.914179 eV Total energy + Delta-G solvation = -2764.564015 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.43965 -36.69879 -34.47015 -32.78579 -32.35885 -29.62192 -28.64119 -26.85699 -25.67193 -23.73015 -22.42573 -21.61236 -20.34314 -18.63033 -16.40823 -16.04994 -15.81737 -15.41406 -15.19816 -14.52029 -14.33430 -14.15085 -13.81224 -13.15303 -12.79819 -12.50780 -12.25109 -11.92148 -11.85334 -11.49649 -11.29287 -11.15149 -10.89413 -10.84204 -10.78914 -10.58180 -10.22240 -10.08934 -10.08783 -9.73784 -9.10348 -8.77811 -8.43703 -8.18193 -7.49613 -6.11857 -4.13392 3.29233 3.34565 3.39538 4.27175 4.36244 4.69426 4.92140 4.94663 5.12809 5.24903 5.35880 5.52644 5.64305 5.69619 5.77229 5.85418 5.88823 5.99922 6.09713 6.13267 6.17574 6.27996 6.34031 6.42805 6.45644 6.63838 6.70044 6.96744 7.07905 7.13491 7.26931 7.41286 7.56444 7.66597 7.74048 7.78447 8.14474 8.55070 9.00070 9.51620 10.99692 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029495 B = 0.006473 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.084309 B = 4324.612830 C = 4624.511964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.078 3.922 3 H 0.083 0.917 4 C -0.103 4.103 5 C -0.114 4.114 6 C 0.097 3.903 7 H 0.029 0.971 8 N -0.825 5.825 9 C 0.059 3.941 10 N -0.510 5.510 11 C 0.054 3.946 12 C 0.022 3.978 13 O -0.378 6.378 14 C 0.191 3.809 15 C -0.510 4.510 16 H 0.067 0.933 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.271 1.271 23 H 0.067 0.933 24 H 0.050 0.950 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.331 0.669 31 H 0.336 0.664 32 H 0.038 0.962 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.034 0.966 37 H 0.037 0.963 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.325 -14.845 0.031 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.030 4.030 3 H 0.101 0.899 4 C -0.141 4.141 5 C -0.152 4.152 6 C -0.014 4.014 7 H 0.047 0.953 8 N -0.355 5.355 9 C -0.070 4.070 10 N -0.234 5.234 11 C -0.074 4.074 12 C -0.057 4.057 13 O -0.298 6.298 14 C 0.117 3.883 15 C -0.549 4.549 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.539 5.539 19 Si 0.733 3.267 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.196 1.196 23 H 0.086 0.914 24 H 0.069 0.931 25 H 0.060 0.940 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.143 0.857 31 H 0.148 0.852 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.052 0.948 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.020 0.980 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.379 -14.915 -0.182 15.294 hybrid contribution 1.200 1.424 -0.240 1.878 sum 4.580 -13.490 -0.422 14.253 Atomic orbital electron populations 1.21720 0.94717 0.99783 1.02491 1.21853 0.95624 0.97354 0.88126 0.89919 1.21529 0.93938 1.01432 0.97194 1.21606 0.97762 0.99868 0.96012 1.21328 0.94764 0.89386 0.95947 0.95325 1.58522 1.67967 1.02154 1.06865 1.22061 0.89678 0.98237 0.96988 1.62095 1.05145 1.54149 1.02024 1.22334 1.01421 0.90799 0.92832 1.23034 0.96551 0.94354 0.91755 1.88028 1.72838 1.23172 1.45787 1.20184 0.95390 0.75700 0.97036 1.21034 1.30555 0.92554 1.10708 0.91518 1.24947 0.95602 0.96865 0.97081 1.69968 1.40155 1.05981 1.37746 0.86375 0.79435 0.78687 0.82246 1.20483 1.21151 1.19594 0.91374 0.93123 0.94028 0.92660 0.90873 0.91883 0.92718 0.85728 0.85163 0.94352 0.91828 0.90839 0.89775 0.94833 0.94492 0.98160 0.97986 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.28 8.20 37.16 0.30 -1.97 16 2 C 0.08 1.35 1.77 -67.72 -0.12 1.23 16 3 H 0.08 1.76 5.58 -51.93 -0.29 1.47 16 4 C -0.10 -1.59 5.21 -26.65 -0.14 -1.72 16 5 C -0.11 -1.57 5.67 -26.61 -0.15 -1.72 16 6 C 0.10 1.21 3.60 -67.63 -0.24 0.97 16 7 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 8 N -0.83 -9.06 8.46 -4.60 -0.04 -9.10 16 9 C 0.06 0.84 4.65 -3.83 -0.02 0.82 16 10 N -0.51 -7.97 4.55 -226.69 -1.03 -9.00 16 11 C 0.05 0.85 5.51 -3.82 -0.02 0.82 16 12 C 0.02 0.41 5.75 37.16 0.21 0.63 16 13 O -0.38 -8.61 5.16 -35.23 -0.18 -8.79 16 14 C 0.19 5.15 5.69 36.01 0.20 5.36 16 15 C -0.51 -14.72 9.43 -34.44 -0.32 -15.05 16 16 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -26.89 13.29 55.43 0.74 -26.16 16 19 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 20 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H 0.07 1.29 5.18 -51.93 -0.27 1.02 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.07 1.13 7.73 -51.93 -0.40 0.73 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.33 3.08 9.04 -39.29 -0.36 2.72 16 31 H 0.34 3.26 8.99 -39.29 -0.35 2.90 16 32 H 0.04 0.61 6.65 -51.93 -0.35 0.27 16 33 H 0.06 0.80 8.06 -51.93 -0.42 0.38 16 34 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 35 H 0.08 1.34 6.32 -51.93 -0.33 1.01 16 36 H 0.03 0.62 6.46 -51.93 -0.34 0.29 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 39 H 0.00 0.07 8.14 -51.93 -0.42 -0.36 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -29.99 304.72 -8.20 -38.18 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.86 Total: 2.60 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -0.39 Total: -9.12 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: -0.33 Total: -44.25 kcal Atomic # 8 Polarization: -8.61 SS G_CDS: -0.18 Total: -8.79 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.99 -8.20 -38.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690879069.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.658 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds