Wall clock time and date at job start Mon Mar 30 2020 03:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46378 * 2 1 4 4 C 1.53039 * 109.45774 * 119.96520 * 2 1 3 5 5 C 1.53116 * 109.27613 * 179.19822 * 4 2 1 6 6 C 1.53120 * 109.16135 * 302.34189 * 5 4 2 7 7 H 1.08999 * 109.53736 * 297.69951 * 6 5 4 8 8 N 1.46896 * 109.50617 * 177.59554 * 6 5 4 9 9 C 1.53040 * 109.27492 * 57.65620 * 6 5 4 10 10 N 1.46846 * 109.46389 * 240.01745 * 2 1 3 11 11 C 1.46898 * 111.00025 * 54.14631 * 10 2 1 12 12 C 1.53000 * 109.46979 * 176.08561 * 11 10 2 13 13 O 1.42900 * 109.46806 * 62.29991 * 12 11 10 14 14 C 1.42904 * 113.99790 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46951 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99588 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00384 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99868 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46883 * 59.99755 * 19 17 15 21 21 H 1.48497 * 109.47218 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46966 * 300.00371 * 19 17 15 23 23 H 1.08992 * 109.47098 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46436 * 59.98495 * 1 2 3 25 25 H 1.08996 * 109.47653 * 299.98505 * 1 2 3 26 26 H 1.09007 * 109.50344 * 299.13708 * 4 2 1 27 27 H 1.08994 * 109.50584 * 59.25507 * 4 2 1 28 28 H 1.09001 * 109.52306 * 182.43850 * 5 4 2 29 29 H 1.08997 * 109.58036 * 62.28166 * 5 4 2 30 30 H 1.00901 * 110.99966 * 60.20042 * 8 6 5 31 31 H 1.00899 * 110.99988 * 184.15265 * 8 6 5 32 32 H 1.09000 * 109.46329 * 180.80227 * 9 6 5 33 33 H 1.09003 * 109.45267 * 60.83366 * 9 6 5 34 34 H 1.08995 * 109.47296 * 296.09101 * 11 10 2 35 35 H 1.08999 * 109.46793 * 56.08896 * 11 10 2 36 36 H 1.08998 * 109.46916 * 182.29495 * 12 11 10 37 37 H 1.09000 * 109.47539 * 302.29889 * 12 11 10 38 38 H 1.09003 * 109.47031 * 299.99751 * 14 13 12 39 39 H 1.08998 * 109.47387 * 59.99479 * 14 13 12 40 40 H 0.96996 * 120.00014 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5709 -0.7359 1.2358 6 6 4.0548 -1.4188 -0.0463 7 1 3.7130 -2.4538 -0.0593 8 7 5.5226 -1.3864 -0.0954 9 6 3.4865 -0.6779 -1.2588 10 7 2.0194 -0.6919 -1.1993 11 6 1.4374 -0.1109 -2.4165 12 6 2.0432 -0.7908 -3.6460 13 8 1.7145 -2.1814 -3.6316 14 6 2.2357 -2.9133 -4.7429 15 6 1.8299 -4.3600 -4.6263 16 1 1.2341 -4.6878 -3.7873 17 6 2.2194 -5.2650 -5.5907 18 7 2.9455 -4.8660 -6.6121 19 14 1.7172 -7.0585 -5.4459 20 1 0.2355 -7.1584 -5.4375 21 1 2.2586 -7.8190 -6.6007 22 1 2.2585 -7.6237 -4.1838 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5141 -0.8899 25 1 -0.3634 0.5136 0.8901 26 1 1.6893 -0.1978 2.1400 27 1 1.6658 -1.7445 1.2579 28 1 3.9378 -1.2860 2.1024 29 1 3.9466 0.2868 1.2679 30 1 5.9216 -1.8696 0.6954 31 1 5.8639 -1.7705 -0.9637 32 1 3.8176 -1.1701 -2.1732 33 1 3.8405 0.3531 -1.2528 34 1 0.3582 -0.2633 -2.4118 35 1 1.6534 0.9570 -2.4485 36 1 1.6418 -0.3320 -4.5496 37 1 3.1267 -0.6733 -3.6294 38 1 1.8387 -2.4986 -5.6695 39 1 3.3231 -2.8398 -4.7485 40 1 3.2198 -5.5028 -7.2904 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000690879071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:40 Heat of formation + Delta-G solvation = -52.078264 kcal Electronic energy + Delta-G solvation = -18338.301269 eV Core-core repulsion = 15573.510250 eV Total energy + Delta-G solvation = -2764.791020 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.44907 -36.64518 -34.91371 -33.12907 -32.43205 -30.05967 -28.80075 -26.79481 -25.69238 -24.07343 -22.27321 -21.27988 -20.65511 -19.45082 -16.38423 -16.14904 -15.82697 -15.38069 -15.16157 -14.78619 -14.41946 -14.33391 -14.07741 -13.43342 -13.03995 -12.82623 -12.48730 -12.22000 -11.94897 -11.83324 -11.61623 -11.18903 -11.15968 -10.84909 -10.77442 -10.76061 -10.65522 -10.20827 -10.11570 -9.83995 -9.06799 -8.75783 -8.64840 -8.11198 -7.96228 -6.07836 -4.08887 3.33794 3.36230 3.40504 3.92706 4.37651 4.62115 4.78997 4.85477 4.99356 5.04379 5.24813 5.28443 5.38422 5.51947 5.54902 5.61408 5.66864 5.74735 5.83336 5.89850 5.92317 5.95793 6.06324 6.12432 6.13467 6.26293 6.28352 6.37724 6.46067 7.12337 7.13958 7.34080 7.42524 7.46695 7.50977 7.83797 8.20255 8.65284 9.05787 9.55859 11.03763 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.005633 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.086400 B = 4969.586810 C = 5278.877675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.081 3.919 3 H 0.034 0.966 4 C -0.110 4.110 5 C -0.111 4.111 6 C 0.092 3.908 7 H 0.049 0.951 8 N -0.850 5.850 9 C 0.061 3.939 10 N -0.518 5.518 11 C 0.061 3.939 12 C 0.060 3.940 13 O -0.378 6.378 14 C 0.194 3.806 15 C -0.511 4.511 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 H 0.067 0.933 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.339 0.661 31 H 0.344 0.656 32 H 0.084 0.916 33 H 0.032 0.968 34 H 0.085 0.915 35 H 0.035 0.965 36 H 0.039 0.961 37 H 0.037 0.963 38 H 0.002 0.998 39 H 0.001 0.999 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.216 10.230 13.628 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.028 4.028 3 H 0.052 0.948 4 C -0.148 4.148 5 C -0.149 4.149 6 C -0.019 4.019 7 H 0.067 0.933 8 N -0.380 5.380 9 C -0.067 4.067 10 N -0.244 5.244 11 C -0.066 4.066 12 C -0.018 4.018 13 O -0.297 6.297 14 C 0.120 3.880 15 C -0.549 4.549 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.201 1.201 23 H 0.086 0.914 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.151 0.849 31 H 0.157 0.843 32 H 0.102 0.898 33 H 0.050 0.950 34 H 0.103 0.897 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.048 10.376 13.675 17.166 hybrid contribution 0.254 -1.009 -0.490 1.150 sum 0.206 9.368 13.185 16.175 Atomic orbital electron populations 1.21902 0.94425 1.02927 1.01256 1.21625 0.95386 0.94949 0.90802 0.94788 1.21599 0.95074 1.01704 0.96449 1.21586 0.95461 1.01006 0.96885 1.21302 0.87113 0.98578 0.94937 0.93301 1.58713 1.06884 1.64420 1.07985 1.22063 0.87313 0.98637 0.98660 1.61753 1.06516 1.54806 1.01278 1.22176 1.00731 0.94705 0.89007 1.22367 0.97774 0.86167 0.95500 1.87970 1.76539 1.16521 1.48705 1.20167 0.93067 0.91170 0.83622 1.21022 1.33315 0.91963 1.08594 0.91593 1.24943 0.95165 0.99433 0.94979 1.69956 1.37016 1.35234 1.11772 0.86416 0.78977 0.83692 0.77505 1.20015 1.21196 1.20086 0.91395 0.92466 0.92648 0.91657 0.90882 0.92323 0.91784 0.84869 0.84283 0.89761 0.94970 0.89651 0.94649 0.94279 0.94469 0.98017 0.98070 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 8.76 37.16 0.33 -1.38 16 2 C 0.08 1.03 2.44 -67.72 -0.17 0.87 16 3 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -1.28 5.37 -26.65 -0.14 -1.42 16 5 C -0.11 -1.31 5.58 -26.61 -0.15 -1.45 16 6 C 0.09 1.27 3.41 -67.63 -0.23 1.04 16 7 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 8 N -0.85 -10.29 9.25 -4.60 -0.04 -10.33 16 9 C 0.06 0.95 4.58 -3.83 -0.02 0.93 16 10 N -0.52 -8.14 4.51 -226.69 -1.02 -9.16 16 11 C 0.06 0.97 4.84 -3.82 -0.02 0.95 16 12 C 0.06 1.14 5.56 37.16 0.21 1.35 16 13 O -0.38 -9.29 10.23 -35.23 -0.36 -9.65 16 14 C 0.19 5.41 5.69 36.00 0.20 5.61 16 15 C -0.51 -15.26 9.43 -34.44 -0.32 -15.59 16 16 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 19 Si 0.91 22.12 29.54 -169.99 -5.02 17.10 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 24 H 0.06 0.65 6.41 -51.93 -0.33 0.32 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.34 3.45 9.04 -39.29 -0.36 3.10 16 31 H 0.34 4.17 8.99 -39.29 -0.35 3.82 16 32 H 0.08 1.48 5.79 -51.93 -0.30 1.18 16 33 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.09 1.34 6.45 -51.93 -0.34 1.00 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.04 0.70 6.05 -51.93 -0.31 0.38 16 38 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 39 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 313.97 15.07 4.73 4.73 Total: -1.00 -31.40 313.97 -8.42 -39.82 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -7.03 Total: 1.52 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -0.41 Total: -7.57 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.33 Total: -45.96 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -0.36 Total: -9.65 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.40 -8.42 -39.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690879071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.255 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds