Wall clock time and date at job start Mon Mar 30 2020 03:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46378 * 2 1 4 4 C 1.53039 * 109.45774 * 119.96520 * 2 1 3 5 5 C 1.53116 * 109.27613 * 179.19822 * 4 2 1 6 6 C 1.53120 * 109.16135 * 302.34189 * 5 4 2 7 7 H 1.08999 * 109.53736 * 297.69951 * 6 5 4 8 8 N 1.46896 * 109.50617 * 177.59554 * 6 5 4 9 9 C 1.53040 * 109.27492 * 57.65620 * 6 5 4 10 10 N 1.46846 * 109.46389 * 240.01745 * 2 1 3 11 11 C 1.46898 * 111.00025 * 54.14631 * 10 2 1 12 12 C 1.53000 * 109.46979 * 176.08561 * 11 10 2 13 13 O 1.42900 * 109.46806 * 62.29991 * 12 11 10 14 14 C 1.42904 * 113.99790 * 180.02562 * 13 12 11 15 15 C 1.50698 * 109.46951 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00140 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99588 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00384 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99868 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46883 * 59.99755 * 19 17 15 21 21 H 1.48497 * 109.47218 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46966 * 300.00371 * 19 17 15 23 23 H 1.08992 * 109.47098 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46436 * 59.98495 * 1 2 3 25 25 H 1.08996 * 109.47653 * 299.98505 * 1 2 3 26 26 H 1.09007 * 109.50344 * 299.13708 * 4 2 1 27 27 H 1.08994 * 109.50584 * 59.25507 * 4 2 1 28 28 H 1.09001 * 109.52306 * 182.43850 * 5 4 2 29 29 H 1.08997 * 109.58036 * 62.28166 * 5 4 2 30 30 H 1.00901 * 110.99966 * 60.20042 * 8 6 5 31 31 H 1.00899 * 110.99988 * 184.15265 * 8 6 5 32 32 H 1.09000 * 109.46329 * 180.80227 * 9 6 5 33 33 H 1.09003 * 109.45267 * 60.83366 * 9 6 5 34 34 H 1.08995 * 109.47296 * 296.09101 * 11 10 2 35 35 H 1.08999 * 109.46793 * 56.08896 * 11 10 2 36 36 H 1.08998 * 109.46916 * 182.29495 * 12 11 10 37 37 H 1.09000 * 109.47539 * 302.29889 * 12 11 10 38 38 H 1.09003 * 109.47031 * 299.99751 * 14 13 12 39 39 H 1.08998 * 109.47387 * 59.99479 * 14 13 12 40 40 H 0.96996 * 120.00014 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5709 -0.7359 1.2358 6 6 4.0548 -1.4188 -0.0463 7 1 3.7130 -2.4538 -0.0593 8 7 5.5226 -1.3864 -0.0954 9 6 3.4865 -0.6779 -1.2588 10 7 2.0194 -0.6919 -1.1993 11 6 1.4374 -0.1109 -2.4165 12 6 2.0432 -0.7908 -3.6460 13 8 1.7145 -2.1814 -3.6316 14 6 2.2357 -2.9133 -4.7429 15 6 1.8299 -4.3600 -4.6263 16 1 1.2341 -4.6878 -3.7873 17 6 2.2194 -5.2650 -5.5907 18 7 2.9455 -4.8660 -6.6121 19 14 1.7172 -7.0585 -5.4459 20 1 0.2355 -7.1584 -5.4375 21 1 2.2586 -7.8190 -6.6007 22 1 2.2585 -7.6237 -4.1838 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3632 0.5141 -0.8899 25 1 -0.3634 0.5136 0.8901 26 1 1.6893 -0.1978 2.1400 27 1 1.6658 -1.7445 1.2579 28 1 3.9378 -1.2860 2.1024 29 1 3.9466 0.2868 1.2679 30 1 5.9216 -1.8696 0.6954 31 1 5.8639 -1.7705 -0.9637 32 1 3.8176 -1.1701 -2.1732 33 1 3.8405 0.3531 -1.2528 34 1 0.3582 -0.2633 -2.4118 35 1 1.6534 0.9570 -2.4485 36 1 1.6418 -0.3320 -4.5496 37 1 3.1267 -0.6733 -3.6294 38 1 1.8387 -2.4986 -5.6695 39 1 3.3231 -2.8398 -4.7485 40 1 3.2198 -5.5028 -7.2904 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000690879071.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:39 Heat of formation + Delta-G solvation = -75.880339 kcal Electronic energy + Delta-G solvation = -18339.333405 eV Core-core repulsion = 15573.510250 eV Total energy + Delta-G solvation = -2765.823155 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.59774 -38.43842 -36.07796 -34.97507 -33.96250 -31.04486 -30.40116 -28.75612 -26.83404 -25.23257 -24.47604 -22.48131 -21.83120 -20.54158 -18.62363 -17.46512 -17.42956 -16.82419 -16.31401 -16.20566 -15.98639 -15.76130 -15.41251 -14.83275 -14.46528 -14.18586 -13.78593 -13.62463 -13.27270 -13.16300 -12.94330 -12.77466 -12.71922 -12.46028 -12.31480 -12.17112 -11.91059 -11.75202 -11.38796 -11.26012 -11.07287 -10.84453 -10.18808 -9.69488 -9.13657 -8.32526 -6.44679 1.38264 1.43095 1.51623 2.33847 2.79383 3.00910 3.22833 3.60604 3.76830 3.90199 4.00719 4.14734 4.21507 4.25339 4.38462 4.45160 4.50730 4.59896 4.70582 4.76380 4.81703 4.87104 4.87507 4.92681 5.01028 5.08485 5.10127 5.17839 5.21237 5.33549 5.47991 5.54450 5.96373 6.05972 6.18034 6.34203 6.53874 6.56058 6.84495 7.27448 8.79635 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024361 B = 0.005633 C = 0.005303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.086400 B = 4969.586810 C = 5278.877675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.078 3.922 3 H 0.045 0.955 4 C -0.107 4.107 5 C -0.104 4.104 6 C 0.094 3.906 7 H 0.021 0.979 8 N -0.846 5.846 9 C 0.067 3.933 10 N -0.541 5.541 11 C 0.069 3.931 12 C 0.051 3.949 13 O -0.391 6.391 14 C 0.210 3.790 15 C -0.546 4.546 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.267 1.267 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.081 0.919 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.351 0.649 31 H 0.342 0.658 32 H 0.052 0.948 33 H 0.038 0.962 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.047 0.953 37 H 0.038 0.962 38 H -0.017 1.017 39 H -0.019 1.019 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 10.400 15.159 18.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 H 0.063 0.937 4 C -0.145 4.145 5 C -0.142 4.142 6 C -0.018 4.018 7 H 0.039 0.961 8 N -0.377 5.377 9 C -0.061 4.061 10 N -0.267 5.267 11 C -0.058 4.058 12 C -0.026 4.026 13 O -0.311 6.311 14 C 0.135 3.865 15 C -0.583 4.583 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.570 5.570 19 Si 0.804 3.196 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.192 1.192 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.111 0.889 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.165 0.835 31 H 0.155 0.845 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.001 0.999 39 H -0.002 1.002 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.523 10.570 15.226 18.542 hybrid contribution 0.437 -0.973 -0.970 1.442 sum -0.085 9.597 14.256 17.185 Atomic orbital electron populations 1.21884 0.93500 1.02177 1.02581 1.21760 0.96129 0.95233 0.89816 0.93744 1.21615 0.94852 1.01081 0.96991 1.21542 0.95600 1.01081 0.95978 1.21245 0.87894 0.97057 0.95567 0.96053 1.58731 1.05958 1.64536 1.08495 1.21948 0.87531 0.98655 0.98011 1.61752 1.06587 1.56134 1.02272 1.22102 1.00421 0.95643 0.87659 1.22689 0.98402 0.83557 0.97932 1.87925 1.76468 1.19395 1.47307 1.19772 0.91594 0.91228 0.83884 1.21329 1.34472 0.93343 1.09195 0.92272 1.25946 0.94511 1.04564 0.94101 1.70063 1.37340 1.37248 1.12352 0.85263 0.79046 0.77154 0.78123 1.18971 1.19810 1.19174 0.93131 0.92462 0.90044 0.88855 0.92394 0.90817 0.91291 0.83504 0.84538 0.92937 0.94398 0.89534 0.91807 0.93511 0.94383 0.99938 1.00162 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.76 71.98 0.63 -2.41 16 2 C 0.08 1.85 2.44 44.94 0.11 1.96 16 3 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.11 -2.25 5.37 30.65 0.16 -2.09 16 5 C -0.10 -2.24 5.58 30.67 0.17 -2.07 16 6 C 0.09 2.56 3.41 44.97 0.15 2.72 16 7 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 8 N -0.85 -20.08 9.25 -168.46 -1.56 -21.64 16 9 C 0.07 2.07 4.58 86.33 0.40 2.46 16 10 N -0.54 -16.75 4.51 -871.11 -3.92 -20.68 16 11 C 0.07 2.14 4.84 86.30 0.42 2.55 16 12 C 0.05 2.00 5.56 71.98 0.40 2.40 16 13 O -0.39 -19.90 10.23 -148.98 -1.52 -21.43 16 14 C 0.21 12.22 5.69 71.24 0.41 12.62 16 15 C -0.55 -33.43 9.43 25.60 0.24 -33.18 16 16 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 17 C 0.01 0.42 5.46 84.65 0.46 0.89 16 18 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 19 Si 0.98 45.19 29.54 68.60 2.03 47.21 16 20 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 23 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.06 1.19 6.41 -2.39 -0.02 1.18 16 25 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 26 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.35 6.80 9.04 -89.69 -0.81 5.99 16 31 H 0.34 8.42 8.99 -89.69 -0.81 7.61 16 32 H 0.05 1.93 5.79 -2.39 -0.01 1.91 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 2.65 6.45 -2.39 -0.02 2.63 16 35 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 1.48 6.05 -2.39 -0.01 1.46 16 38 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 39 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 40 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -68.10 313.97 -1.75 -69.85 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -0.60 Total: 17.40 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 3.55 Total: -14.15 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -5.20 Total: -98.88 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.52 Total: -21.43 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -68.10 -1.75 -69.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000690879071.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.031 kcal (2) G-P(sol) polarization free energy of solvation -68.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds