Wall clock time and date at job start Mon Mar 30 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.46310 * 113.99649 * 2 1 4 4 C 1.46846 * 110.99486 * 120.00008 * 3 2 1 5 5 C 1.53045 * 109.52149 * 185.83872 * 4 3 2 6 6 C 1.53121 * 109.27810 * 300.82188 * 5 4 3 7 7 N 1.46896 * 109.52200 * 177.55667 * 6 5 4 8 8 C 1.46902 * 111.00044 * 57.25020 * 7 6 5 9 9 C 1.46899 * 110.99858 * 181.20338 * 7 6 5 10 10 H 1.08991 * 109.47755 * 54.47479 * 9 7 6 11 11 C 1.53005 * 109.47157 * 174.47772 * 9 7 6 12 12 C 1.50708 * 109.47202 * 294.47689 * 9 7 6 13 13 H 1.07997 * 119.99588 * 359.97438 * 12 9 7 14 14 C 1.37873 * 120.00199 * 180.02562 * 12 9 7 15 15 N 1.31518 * 120.00079 * 359.97438 * 14 12 9 16 16 Si 1.86794 * 120.00244 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47138 * 59.99428 * 16 14 12 18 18 H 1.48499 * 109.47503 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46971 * 299.99707 * 16 14 12 20 20 C 1.53118 * 109.21029 * 57.62266 * 6 5 4 21 21 C 1.46839 * 111.00182 * 244.21040 * 3 2 1 22 22 H 1.09005 * 109.47255 * 299.99763 * 1 2 3 23 23 H 1.09003 * 109.47357 * 59.99385 * 1 2 3 24 24 H 1.08997 * 109.47056 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46078 * 65.82923 * 4 3 2 26 26 H 1.09001 * 109.46164 * 305.85168 * 4 3 2 27 27 H 1.08997 * 109.50357 * 180.88390 * 5 4 3 28 28 H 1.09000 * 109.50311 * 60.76424 * 5 4 3 29 29 H 1.08997 * 109.52542 * 297.69052 * 6 5 4 30 30 H 1.08997 * 109.47032 * 183.95176 * 8 7 6 31 31 H 1.09004 * 109.47062 * 303.95359 * 8 7 6 32 32 H 1.09001 * 109.46900 * 63.94871 * 8 7 6 33 33 H 1.08998 * 109.47176 * 186.74878 * 11 9 7 34 34 H 1.09002 * 109.46969 * 66.75157 * 11 9 7 35 35 H 1.08999 * 109.47008 * 306.75563 * 11 9 7 36 36 H 0.96994 * 120.00138 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.50571 * 62.31755 * 20 6 5 38 38 H 1.09004 * 109.50118 * 182.43682 * 20 6 5 39 39 H 1.09007 * 109.46693 * 294.17982 * 21 3 2 40 40 H 1.09001 * 109.46144 * 54.15822 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3366 0.0000 4 6 2.8642 1.5385 1.1873 5 6 3.3507 2.9890 1.2289 6 6 4.1495 3.2909 -0.0421 7 7 4.5695 4.6986 -0.0351 8 6 5.3591 5.0064 1.1648 9 6 5.3156 5.0313 -1.2559 10 1 4.7194 4.7678 -2.1294 11 6 5.6159 6.5315 -1.2772 12 6 6.6099 4.2596 -1.2798 13 1 6.8539 3.5893 -0.4689 14 6 7.4828 4.4100 -2.3363 15 7 7.1859 5.2267 -3.3236 16 14 9.0867 3.4530 -2.3663 17 1 8.7948 1.9970 -2.3466 18 1 9.8410 3.7894 -3.6004 19 1 9.8991 3.8111 -1.1759 20 6 3.2682 3.0260 -1.2659 21 6 2.7829 1.5749 -1.2343 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 3.7230 0.8686 1.1427 26 1 2.2829 1.3246 2.0842 27 1 3.9871 3.1345 2.1018 28 1 2.4929 3.6590 1.2874 29 1 5.0291 2.6485 -0.0807 30 1 5.5975 6.0699 1.1799 31 1 4.7833 4.7505 2.0543 32 1 6.2824 4.4272 1.1507 33 1 6.0622 6.7992 -2.2349 34 1 6.3097 6.7746 -0.4725 35 1 4.6897 7.0894 -1.1392 36 1 7.8002 5.3328 -4.0666 37 1 2.4091 3.6966 -1.2477 38 1 3.8457 3.1979 -2.1742 39 1 3.6420 0.9048 -1.2676 40 1 2.1425 1.3875 -2.0962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691955473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:28 Heat of formation + Delta-G solvation = 8.244698 kcal Electronic energy + Delta-G solvation = -18804.360895 eV Core-core repulsion = 16042.185675 eV Total energy + Delta-G solvation = -2762.175220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.87523 -36.82611 -34.97749 -32.60841 -30.74045 -30.18380 -28.21567 -26.18015 -25.26930 -24.70972 -22.67258 -21.75669 -19.65263 -18.94801 -17.10626 -16.17575 -15.29142 -15.17157 -15.02993 -14.55443 -13.95531 -13.72082 -13.60358 -13.41003 -12.75014 -12.51757 -12.34212 -12.04745 -11.74895 -11.36638 -11.17365 -10.95941 -10.87324 -10.81802 -10.60679 -10.35059 -10.21698 -10.00044 -9.92538 -9.68375 -9.54547 -9.07066 -8.52250 -8.38393 -7.12238 -5.99772 -4.11736 2.72207 3.26641 3.32147 3.34647 4.38905 4.84415 4.97734 5.18789 5.27270 5.45831 5.48249 5.52373 5.59155 5.66297 5.69121 5.77040 5.93224 5.94406 6.11634 6.19953 6.25263 6.28918 6.46710 6.53561 6.73225 6.77676 6.90487 6.97306 7.02686 7.06810 7.19769 7.23894 7.58412 7.72156 7.97334 8.16957 8.33149 8.44583 8.97633 9.55536 11.00731 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.006637 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.847968 B = 4217.834873 C = 4585.304706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.276 6.276 3 N -0.359 5.359 4 C 0.047 3.953 5 C -0.108 4.108 6 C 0.089 3.911 7 N -0.536 5.536 8 C 0.030 3.970 9 C 0.203 3.797 10 H 0.044 0.956 11 C -0.128 4.128 12 C -0.542 4.542 13 H 0.054 0.946 14 C 0.069 3.931 15 N -0.886 5.886 16 Si 0.885 3.115 17 H -0.279 1.279 18 H -0.287 1.287 19 H -0.278 1.278 20 C -0.102 4.102 21 C 0.045 3.955 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.082 0.918 25 H 0.041 0.959 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.079 0.921 34 H 0.027 0.973 35 H 0.015 0.985 36 H 0.261 0.739 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.392 -5.602 6.380 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.279 6.279 3 N -0.130 5.130 4 C -0.082 4.082 5 C -0.147 4.147 6 C -0.020 4.020 7 N -0.260 5.260 8 C -0.119 4.119 9 C 0.097 3.903 10 H 0.062 0.938 11 C -0.186 4.186 12 C -0.581 4.581 13 H 0.072 0.928 14 C -0.133 4.133 15 N -0.525 5.525 16 Si 0.713 3.287 17 H -0.204 1.204 18 H -0.212 1.212 19 H -0.204 1.204 20 C -0.140 4.140 21 C -0.083 4.083 22 H 0.060 0.940 23 H 0.061 0.939 24 H 0.100 0.900 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.090 0.910 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.034 0.966 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.107 0.893 39 H 0.061 0.939 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.024 -5.102 6.217 12.852 hybrid contribution 2.318 -1.533 -0.129 2.782 sum -7.706 -6.635 6.088 11.852 Atomic orbital electron populations 1.22531 0.81224 1.01064 1.00424 1.90650 1.20375 1.20003 1.96887 1.67664 1.34980 1.06623 1.03703 1.22378 0.95483 0.97698 0.92643 1.21758 1.00371 0.93678 0.98869 1.21439 0.95989 0.91387 0.93170 1.62582 1.41855 1.17366 1.04161 1.22233 0.96221 1.01029 0.92369 1.19339 0.91160 0.92839 0.86978 0.93824 1.21769 0.97441 0.97144 1.02251 1.21643 1.04782 1.25591 1.06051 0.92801 1.24880 0.97852 0.95070 0.95506 1.69880 1.36695 1.36320 1.09572 0.86775 0.84068 0.80493 0.77365 1.20438 1.21214 1.20384 1.21644 0.99653 0.92851 0.99853 1.22453 0.96413 0.98084 0.91386 0.94003 0.93929 0.89994 0.94086 0.90528 0.90951 0.90532 0.93744 0.92255 0.93821 0.95182 0.90271 0.95433 0.96636 0.92878 0.90944 0.89251 0.93906 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 11.51 101.05 1.16 1.68 16 2 O -0.28 -4.22 10.96 -13.93 -0.15 -4.37 16 3 N -0.36 -5.64 5.00 -113.81 -0.57 -6.21 16 4 C 0.05 0.69 5.99 -3.83 -0.02 0.67 16 5 C -0.11 -1.69 4.98 -26.65 -0.13 -1.82 16 6 C 0.09 1.68 1.75 -67.59 -0.12 1.56 16 7 N -0.54 -11.12 4.62 -228.15 -1.05 -12.17 16 8 C 0.03 0.58 8.58 60.07 0.52 1.10 16 9 C 0.20 4.91 2.08 -68.86 -0.14 4.77 16 10 H 0.04 1.14 6.06 -51.93 -0.31 0.83 16 11 C -0.13 -3.06 8.47 37.16 0.31 -2.75 16 12 C -0.54 -14.23 7.06 -34.44 -0.24 -14.47 16 13 H 0.05 1.43 5.81 -52.49 -0.31 1.13 16 14 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 15 N -0.89 -24.66 11.40 55.43 0.63 -24.03 16 16 Si 0.88 21.05 29.54 -169.99 -5.02 16.03 16 17 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.10 -1.83 5.05 -26.65 -0.13 -1.96 16 21 C 0.05 0.74 5.99 -3.83 -0.02 0.71 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.06 6.43 -51.93 -0.33 0.72 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.04 0.95 6.86 -51.93 -0.36 0.59 16 30 H 0.06 1.15 6.49 -51.93 -0.34 0.81 16 31 H 0.04 0.72 6.09 -51.93 -0.32 0.40 16 32 H 0.03 0.62 6.37 -51.93 -0.33 0.29 16 33 H 0.08 2.07 6.28 -51.93 -0.33 1.74 16 34 H 0.03 0.64 6.80 -51.93 -0.35 0.29 16 35 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 37 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.09 1.80 6.42 -51.93 -0.33 1.47 16 39 H 0.04 0.74 8.14 -51.92 -0.42 0.31 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -27.81 302.93 -7.19 -35.00 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.67 Total: -0.07 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 1.08 Total: -8.74 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: -0.99 Total: -42.41 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.15 Total: -4.37 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -27.81 -7.19 -35.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691955473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.240 kcal (2) G-P(sol) polarization free energy of solvation -27.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds