Wall clock time and date at job start Mon Mar 30 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.46310 * 113.99649 * 2 1 4 4 C 1.46846 * 110.99486 * 120.00008 * 3 2 1 5 5 C 1.53045 * 109.52149 * 185.83872 * 4 3 2 6 6 C 1.53121 * 109.27810 * 300.82188 * 5 4 3 7 7 N 1.46896 * 109.52200 * 177.55667 * 6 5 4 8 8 C 1.46902 * 111.00044 * 57.25020 * 7 6 5 9 9 C 1.46899 * 110.99858 * 181.20338 * 7 6 5 10 10 H 1.08991 * 109.47755 * 54.47479 * 9 7 6 11 11 C 1.53005 * 109.47157 * 174.47772 * 9 7 6 12 12 C 1.50708 * 109.47202 * 294.47689 * 9 7 6 13 13 H 1.07997 * 119.99588 * 359.97438 * 12 9 7 14 14 C 1.37873 * 120.00199 * 180.02562 * 12 9 7 15 15 N 1.31518 * 120.00079 * 359.97438 * 14 12 9 16 16 Si 1.86794 * 120.00244 * 180.02562 * 14 12 9 17 17 H 1.48506 * 109.47138 * 59.99428 * 16 14 12 18 18 H 1.48499 * 109.47503 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46971 * 299.99707 * 16 14 12 20 20 C 1.53118 * 109.21029 * 57.62266 * 6 5 4 21 21 C 1.46839 * 111.00182 * 244.21040 * 3 2 1 22 22 H 1.09005 * 109.47255 * 299.99763 * 1 2 3 23 23 H 1.09003 * 109.47357 * 59.99385 * 1 2 3 24 24 H 1.08997 * 109.47056 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46078 * 65.82923 * 4 3 2 26 26 H 1.09001 * 109.46164 * 305.85168 * 4 3 2 27 27 H 1.08997 * 109.50357 * 180.88390 * 5 4 3 28 28 H 1.09000 * 109.50311 * 60.76424 * 5 4 3 29 29 H 1.08997 * 109.52542 * 297.69052 * 6 5 4 30 30 H 1.08997 * 109.47032 * 183.95176 * 8 7 6 31 31 H 1.09004 * 109.47062 * 303.95359 * 8 7 6 32 32 H 1.09001 * 109.46900 * 63.94871 * 8 7 6 33 33 H 1.08998 * 109.47176 * 186.74878 * 11 9 7 34 34 H 1.09002 * 109.46969 * 66.75157 * 11 9 7 35 35 H 1.08999 * 109.47008 * 306.75563 * 11 9 7 36 36 H 0.96994 * 120.00138 * 179.97438 * 15 14 12 37 37 H 1.09003 * 109.50571 * 62.31755 * 20 6 5 38 38 H 1.09004 * 109.50118 * 182.43682 * 20 6 5 39 39 H 1.09007 * 109.46693 * 294.17982 * 21 3 2 40 40 H 1.09001 * 109.46144 * 54.15822 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3366 0.0000 4 6 2.8642 1.5385 1.1873 5 6 3.3507 2.9890 1.2289 6 6 4.1495 3.2909 -0.0421 7 7 4.5695 4.6986 -0.0351 8 6 5.3591 5.0064 1.1648 9 6 5.3156 5.0313 -1.2559 10 1 4.7194 4.7678 -2.1294 11 6 5.6159 6.5315 -1.2772 12 6 6.6099 4.2596 -1.2798 13 1 6.8539 3.5893 -0.4689 14 6 7.4828 4.4100 -2.3363 15 7 7.1859 5.2267 -3.3236 16 14 9.0867 3.4530 -2.3663 17 1 8.7948 1.9970 -2.3466 18 1 9.8410 3.7894 -3.6004 19 1 9.8991 3.8111 -1.1759 20 6 3.2682 3.0260 -1.2659 21 6 2.7829 1.5749 -1.2343 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 3.7230 0.8686 1.1427 26 1 2.2829 1.3246 2.0842 27 1 3.9871 3.1345 2.1018 28 1 2.4929 3.6590 1.2874 29 1 5.0291 2.6485 -0.0807 30 1 5.5975 6.0699 1.1799 31 1 4.7833 4.7505 2.0543 32 1 6.2824 4.4272 1.1507 33 1 6.0622 6.7992 -2.2349 34 1 6.3097 6.7746 -0.4725 35 1 4.6897 7.0894 -1.1392 36 1 7.8002 5.3328 -4.0666 37 1 2.4091 3.6966 -1.2477 38 1 3.8457 3.1979 -2.1742 39 1 3.6420 0.9048 -1.2676 40 1 2.1425 1.3875 -2.0962 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691955473.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:28 Heat of formation + Delta-G solvation = -10.077173 kcal Electronic energy + Delta-G solvation = -18805.155391 eV Core-core repulsion = 16042.185675 eV Total energy + Delta-G solvation = -2762.969716 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.33100 -38.23323 -36.36259 -34.49415 -32.13817 -31.72140 -29.86637 -27.46911 -27.06117 -26.25875 -24.03869 -23.22188 -21.31289 -20.56661 -18.31462 -18.14735 -17.02835 -16.39557 -16.31892 -16.16491 -15.42825 -15.19724 -14.96930 -14.86911 -14.35458 -13.94820 -13.75523 -13.51724 -13.23768 -13.03963 -12.97555 -12.67926 -12.41145 -12.34331 -12.15218 -12.13239 -11.95678 -11.72996 -11.35165 -11.27517 -11.04285 -10.79533 -10.43676 -9.75820 -8.91533 -8.03555 -6.23744 1.36006 1.37466 1.43959 1.57918 2.39406 3.16430 3.35518 3.68803 3.85239 4.18381 4.20642 4.33846 4.38901 4.53651 4.60753 4.66555 4.72853 4.75533 4.78647 4.80962 4.89778 4.93340 4.94526 5.03778 5.11236 5.16221 5.21937 5.25043 5.33595 5.44682 5.58344 5.73519 5.74866 6.01961 6.07711 6.22635 6.39156 6.68609 6.96631 7.46366 8.92785 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027557 B = 0.006637 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.847968 B = 4217.834873 C = 4585.304706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.290 6.290 3 N -0.362 5.362 4 C 0.049 3.951 5 C -0.096 4.096 6 C 0.089 3.911 7 N -0.534 5.534 8 C 0.033 3.967 9 C 0.207 3.793 10 H 0.019 0.981 11 C -0.117 4.117 12 C -0.545 4.545 13 H 0.046 0.954 14 C 0.024 3.976 15 N -0.911 5.911 16 Si 0.940 3.060 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.274 1.274 20 C -0.093 4.093 21 C 0.053 3.947 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.108 0.892 25 H 0.031 0.969 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.015 0.985 30 H 0.057 0.943 31 H 0.078 0.922 32 H 0.010 0.990 33 H 0.054 0.946 34 H 0.026 0.974 35 H 0.031 0.969 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.028 0.972 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 -6.376 7.865 14.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.294 6.294 3 N -0.132 5.132 4 C -0.080 4.080 5 C -0.134 4.134 6 C -0.020 4.020 7 N -0.257 5.257 8 C -0.116 4.116 9 C 0.100 3.900 10 H 0.037 0.963 11 C -0.175 4.175 12 C -0.584 4.584 13 H 0.064 0.936 14 C -0.176 4.176 15 N -0.550 5.550 16 Si 0.767 3.233 17 H -0.204 1.204 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.131 4.131 21 C -0.076 4.076 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.126 0.874 25 H 0.050 0.950 26 H 0.119 0.881 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.097 0.903 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.050 0.950 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.031 -5.877 7.718 14.690 hybrid contribution 2.542 -1.327 -0.572 2.924 sum -8.490 -7.204 7.146 13.230 Atomic orbital electron populations 1.22791 0.79159 1.02962 1.00899 1.90640 1.22618 1.19200 1.96992 1.67642 1.34648 1.07559 1.03306 1.22396 0.95489 0.96778 0.93310 1.21650 1.00143 0.94423 0.97186 1.21494 0.95480 0.89554 0.95461 1.62544 1.41126 1.18683 1.03395 1.22269 0.95785 1.00589 0.92918 1.19135 0.90298 0.92724 0.87872 0.96273 1.21601 0.97922 0.97196 1.00773 1.21849 1.05600 1.25356 1.05642 0.93558 1.25538 1.00668 0.96008 0.95408 1.69994 1.37598 1.37442 1.10005 0.85895 0.80828 0.79171 0.77427 1.20397 1.20828 1.19967 1.21478 0.99140 0.94276 0.98251 1.22294 0.96230 0.96400 0.92666 0.93174 0.93770 0.87374 0.95023 0.88132 0.89564 0.89847 0.96683 0.92450 0.90350 0.97140 0.92707 0.95491 0.95027 0.92966 0.90550 0.92285 0.95362 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 11.51 113.37 1.30 2.07 16 2 O -0.29 -8.22 10.96 -50.19 -0.55 -8.77 16 3 N -0.36 -10.69 5.00 -513.98 -2.57 -13.26 16 4 C 0.05 1.34 5.99 86.33 0.52 1.86 16 5 C -0.10 -2.76 4.98 30.65 0.15 -2.61 16 6 C 0.09 3.32 1.75 45.00 0.08 3.40 16 7 N -0.53 -21.92 4.62 -875.72 -4.04 -25.96 16 8 C 0.03 1.22 8.58 127.69 1.10 2.31 16 9 C 0.21 10.17 2.08 44.17 0.09 10.26 16 10 H 0.02 1.05 6.06 -2.39 -0.01 1.03 16 11 C -0.12 -5.63 8.47 71.98 0.61 -5.02 16 12 C -0.55 -29.12 7.06 25.60 0.18 -28.94 16 13 H 0.05 2.50 5.81 -2.91 -0.02 2.49 16 14 C 0.02 1.29 5.30 84.65 0.45 1.74 16 15 N -0.91 -51.64 11.40 21.45 0.24 -51.39 16 16 Si 0.94 43.57 29.54 68.60 2.03 45.60 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 20 C -0.09 -3.37 5.05 30.65 0.15 -3.21 16 21 C 0.05 1.70 5.99 86.33 0.52 2.22 16 22 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 23 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 25 H 0.03 0.93 8.14 -2.38 -0.02 0.91 16 26 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.09 2.26 6.43 -2.39 -0.02 2.24 16 28 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.02 0.66 6.86 -2.39 -0.02 0.64 16 30 H 0.06 2.14 6.49 -2.39 -0.02 2.13 16 31 H 0.08 2.36 6.09 -2.38 -0.01 2.35 16 32 H 0.01 0.42 6.37 -2.39 -0.02 0.40 16 33 H 0.05 2.90 6.28 -2.39 -0.01 2.89 16 34 H 0.03 1.25 6.80 -2.39 -0.02 1.24 16 35 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 37 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 38 H 0.06 2.48 6.42 -2.38 -0.02 2.47 16 39 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -59.24 302.93 1.26 -57.98 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 1.00 Total: 11.73 kcal Atomic # 6 Polarization: -21.07 SS G_CDS: 5.15 Total: -15.91 kcal Atomic # 7 Polarization: -84.25 SS G_CDS: -6.37 Total: -90.61 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -0.55 Total: -8.77 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -59.24 1.26 -57.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691955473.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.900 kcal (2) G-P(sol) polarization free energy of solvation -59.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds