Wall clock time and date at job start Mon Mar 30 2020 04:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47385 * 2 1 4 4 C 1.52995 * 109.47234 * 239.99434 * 2 1 3 5 5 C 1.50706 * 109.47315 * 174.99757 * 4 2 1 6 6 H 1.07997 * 119.99667 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00115 * 179.97438 * 5 4 2 8 8 N 1.31520 * 120.00244 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99942 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47348 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47570 * 120.00143 * 9 7 5 12 12 H 1.48506 * 109.46951 * 239.99908 * 9 7 5 13 13 N 1.46897 * 109.47152 * 119.99524 * 2 1 3 14 14 C 1.46902 * 111.00324 * 275.00045 * 13 2 1 15 15 C 1.53000 * 109.47246 * 179.97438 * 14 13 2 16 16 H 1.08993 * 109.51054 * 304.91325 * 15 14 13 17 17 C 1.53106 * 109.54106 * 184.80465 * 15 14 13 18 18 N 1.47011 * 109.25649 * 183.19696 * 17 15 14 19 19 C 1.46897 * 110.99678 * 182.39154 * 18 17 15 20 20 C 1.47104 * 110.77695 * 58.61855 * 18 17 15 21 21 C 1.53103 * 109.20909 * 301.40918 * 20 18 17 22 22 O 1.43012 * 109.29295 * 56.82966 * 21 20 18 23 23 H 1.09005 * 109.47074 * 300.00665 * 1 2 3 24 24 H 1.09001 * 109.46896 * 60.00361 * 1 2 3 25 25 H 1.08998 * 109.47283 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47293 * 294.99966 * 4 2 1 27 27 H 1.08996 * 109.47043 * 55.00162 * 4 2 1 28 28 H 0.96996 * 119.99668 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00221 * 151.04523 * 13 2 1 30 30 H 1.09006 * 109.47059 * 59.99708 * 14 13 2 31 31 H 1.08998 * 109.47212 * 300.00000 * 14 13 2 32 32 H 1.08998 * 109.50564 * 303.12935 * 17 15 14 33 33 H 1.08996 * 109.50436 * 63.26183 * 17 15 14 34 34 H 1.09003 * 109.47173 * 60.00374 * 19 18 17 35 35 H 1.09004 * 109.46843 * 180.02562 * 19 18 17 36 36 H 1.08997 * 109.47328 * 300.00018 * 19 18 17 37 37 H 1.09004 * 109.56899 * 181.46911 * 20 18 17 38 38 H 1.08998 * 109.49713 * 61.30711 * 20 18 17 39 39 H 1.09002 * 109.50635 * 296.87124 * 21 20 18 40 40 H 1.09003 * 109.50698 * 176.78735 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5420 -0.6150 -1.3127 6 1 4.0790 -0.0861 -0.5392 7 6 4.2305 -1.1937 -2.3576 8 7 3.5765 -1.8381 -3.2993 9 14 6.0922 -1.0624 -2.4359 10 1 6.5838 -0.2917 -1.2657 11 1 6.6857 -2.4235 -2.4176 12 1 6.4871 -0.3670 -3.6873 13 7 2.0197 -0.6924 1.1995 14 6 2.0825 0.2228 2.3469 15 6 2.5950 -0.5330 3.5745 16 1 1.9686 -1.4071 3.7516 17 6 2.5480 0.3861 4.7982 18 7 3.1128 -0.3204 5.9571 19 6 3.0345 0.5079 7.1678 20 6 4.4989 -0.7347 5.6910 21 6 4.5256 -1.6420 4.4580 22 8 3.9445 -0.9500 3.3495 23 1 -0.3633 0.5140 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.7517 -1.7716 -1.2054 27 1 1.6054 -0.2619 -2.1369 28 1 4.0609 -2.2449 -4.0346 29 1 2.9173 -1.1204 1.0288 30 1 1.0870 0.6165 2.5525 31 1 2.7588 1.0463 2.1182 32 1 3.1312 1.2854 4.6005 33 1 1.5141 0.6606 5.0076 34 1 1.9919 0.7465 7.3780 35 1 3.4595 -0.0385 8.0099 36 1 3.5944 1.4303 7.0139 37 1 4.8891 -1.2784 6.5514 38 1 5.1133 0.1468 5.5075 39 1 3.9553 -2.5485 4.6608 40 1 5.5567 -1.9058 4.2224 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695777721.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:30 Heat of formation + Delta-G solvation = -51.615364 kcal Electronic energy + Delta-G solvation = -18170.375561 eV Core-core repulsion = 15405.604614 eV Total energy + Delta-G solvation = -2764.770947 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.62256 -36.60733 -35.55323 -33.07776 -31.94224 -29.62517 -28.66670 -27.32520 -25.25646 -24.11397 -22.98920 -21.49888 -20.40830 -19.25524 -16.44767 -16.28939 -16.17082 -15.49797 -15.17605 -14.92995 -14.58240 -14.34822 -13.78262 -13.64184 -13.08127 -12.62583 -12.44653 -12.10288 -11.90522 -11.75459 -11.57327 -11.45280 -11.25418 -11.08428 -10.80784 -10.67858 -10.43420 -10.26031 -10.13294 -9.50674 -9.14135 -8.98880 -8.56811 -8.33323 -7.56992 -5.96333 -3.98471 3.34076 3.41597 3.46703 3.64952 3.91612 4.49984 4.64418 4.86102 4.89970 5.13588 5.20198 5.20794 5.32832 5.37623 5.44574 5.47738 5.59834 5.60223 5.68453 5.79081 5.86628 5.96649 6.13430 6.22963 6.30574 6.37434 6.58728 6.75567 6.76167 6.98139 7.01578 7.37074 7.59429 7.71667 8.03447 8.12819 8.39408 8.46150 9.07882 9.65609 11.14751 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024220 B = 0.005945 C = 0.004971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.781628 B = 4708.471589 C = 5631.300750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.519 4.519 6 H 0.053 0.947 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.286 1.286 13 N -0.680 5.680 14 C 0.069 3.931 15 C 0.096 3.904 16 H 0.075 0.925 17 C 0.024 3.976 18 N -0.542 5.542 19 C 0.025 3.975 20 C 0.017 3.983 21 C 0.064 3.936 22 O -0.373 6.373 23 H 0.035 0.965 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.026 0.974 27 H 0.021 0.979 28 H 0.259 0.741 29 H 0.363 0.637 30 H 0.076 0.924 31 H 0.029 0.971 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.220 3.706 18.328 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.558 4.558 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.212 1.212 13 N -0.315 5.315 14 C -0.062 4.062 15 C 0.038 3.962 16 H 0.093 0.907 17 C -0.104 4.104 18 N -0.267 5.267 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.013 4.013 22 O -0.291 6.291 23 H 0.054 0.946 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.069 0.931 29 H 0.185 0.815 30 H 0.094 0.906 31 H 0.048 0.952 32 H 0.060 0.940 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.984 2.972 18.231 18.578 hybrid contribution 2.221 1.333 -0.130 2.594 sum 0.238 4.305 18.102 18.608 Atomic orbital electron populations 1.21799 0.96807 1.01314 0.99375 1.21618 0.93245 0.95891 0.91557 0.95398 1.19283 0.95488 0.96200 0.90755 1.21232 0.92216 1.34176 1.08160 0.92855 1.24975 0.98191 0.95225 0.95730 1.69978 1.35333 1.35888 1.12025 0.86579 0.86114 0.77772 0.77807 1.19785 1.20986 1.21179 1.60569 1.35453 1.31418 1.04093 1.21885 0.99206 0.94292 0.90768 1.22255 0.83907 0.96906 0.93147 0.90736 1.22807 1.00650 0.96045 0.90915 1.62221 1.19139 1.41577 1.03774 1.22373 1.02018 0.95462 0.92458 1.22856 0.89106 0.99561 0.99631 1.22601 0.99202 0.94182 0.85330 1.88083 1.27423 1.75543 1.38075 0.94601 0.93356 0.92621 0.95584 0.96093 0.93102 0.81519 0.90626 0.95246 0.94021 0.89662 0.91199 0.91344 0.95652 0.89874 0.94068 0.92293 0.88533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 9.41 37.16 0.35 -2.12 16 2 C 0.09 1.85 2.59 -67.72 -0.18 1.68 16 3 H 0.03 0.62 7.80 -51.93 -0.40 0.21 16 4 C 0.02 0.52 4.57 -27.88 -0.13 0.40 16 5 C -0.52 -14.72 8.12 -34.44 -0.28 -15.00 16 6 H 0.05 1.50 7.49 -52.49 -0.39 1.11 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 10 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 N -0.68 -13.76 6.31 -106.73 -0.67 -14.44 16 14 C 0.07 1.15 5.19 -3.82 -0.02 1.13 16 15 C 0.10 1.45 3.04 -26.68 -0.08 1.37 16 16 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 17 C 0.02 0.30 4.95 -3.71 -0.02 0.29 16 18 N -0.54 -6.29 4.99 -242.51 -1.21 -7.50 16 19 C 0.03 0.23 9.60 60.06 0.58 0.80 16 20 C 0.02 0.19 5.67 -3.66 -0.02 0.16 16 21 C 0.06 0.82 7.01 37.21 0.26 1.08 16 22 O -0.37 -6.22 9.99 -35.23 -0.35 -6.57 16 23 H 0.03 0.57 7.45 -51.93 -0.39 0.18 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 29 H 0.36 8.25 6.77 -39.29 -0.27 7.99 16 30 H 0.08 1.12 7.44 -51.93 -0.39 0.74 16 31 H 0.03 0.52 8.06 -51.93 -0.42 0.10 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -30.68 318.35 -8.66 -39.34 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.31 Total: 2.24 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: 0.37 Total: -8.57 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -1.15 Total: -48.24 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.35 Total: -6.57 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.68 -8.66 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695777721.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.276 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds