Wall clock time and date at job start Mon Mar 30 2020 04:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 C 1.50698 * 109.47216 * 184.99588 * 4 2 1 6 6 H 1.07999 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47214 * 90.00526 * 9 7 5 11 11 H 1.48506 * 109.47065 * 210.00443 * 9 7 5 12 12 H 1.48503 * 109.46987 * 330.00373 * 9 7 5 13 13 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 14 14 C 1.46905 * 110.99870 * 84.99904 * 13 2 1 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 2 16 16 H 1.08997 * 109.51339 * 59.99908 * 15 14 13 17 17 C 1.53103 * 109.50807 * 180.08732 * 15 14 13 18 18 N 1.47014 * 109.26021 * 176.78253 * 17 15 14 19 19 C 1.46900 * 111.00201 * 177.61041 * 18 17 15 20 20 C 1.47017 * 110.75026 * 301.38382 * 18 17 15 21 21 C 1.53097 * 109.26104 * 58.61704 * 20 18 17 22 22 O 1.43020 * 109.29420 * 303.17233 * 21 20 18 23 23 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 24 24 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 26 26 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 27 27 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 28 28 H 0.96998 * 119.99857 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00067 * 208.95080 * 13 2 1 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 2 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 2 32 32 H 1.08998 * 109.50573 * 296.71876 * 17 15 14 33 33 H 1.09001 * 109.50319 * 56.80174 * 17 15 14 34 34 H 1.08999 * 109.47173 * 59.99771 * 19 18 17 35 35 H 1.08995 * 109.47219 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.46708 * 300.00187 * 19 18 17 37 37 H 1.09004 * 109.50146 * 178.55112 * 20 18 17 38 38 H 1.08994 * 109.50929 * 298.68041 * 20 18 17 39 39 H 1.09006 * 109.50781 * 63.07990 * 21 20 18 40 40 H 1.08997 * 109.51081 * 183.21153 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1927 2.3582 8 7 3.5763 -1.8370 3.3000 9 14 6.0919 -1.0604 2.4372 10 1 6.4698 0.1622 3.1905 11 1 6.6445 -2.2555 3.1241 12 1 6.6415 -0.9828 1.0598 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5950 -0.5330 -3.5745 16 1 1.9188 -1.3565 -3.8036 17 6 2.6628 0.4206 -4.7704 18 7 3.2283 -0.2906 -5.9262 19 6 3.2584 0.5742 -7.1132 20 6 4.5697 -0.8057 -5.6155 21 6 4.4828 -1.7470 -4.4112 22 8 3.9019 -1.0486 -3.3065 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7715 1.2055 28 1 4.0607 -2.2437 4.0354 29 1 2.9173 -1.1204 -1.0288 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 1.6598 0.7710 -5.0137 33 1 3.2955 1.2724 -4.5211 34 1 3.8720 1.4515 -6.9082 35 1 3.6807 0.0233 -7.9535 36 1 2.2442 0.8896 -7.3588 37 1 4.9586 -1.3504 -6.4759 38 1 5.2335 0.0261 -5.3801 39 1 3.8619 -2.6063 -4.6648 40 1 5.4829 -2.0866 -4.1417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695777728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:36 Heat of formation + Delta-G solvation = -51.395580 kcal Electronic energy + Delta-G solvation = -18187.040708 eV Core-core repulsion = 15422.279292 eV Total energy + Delta-G solvation = -2764.761416 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.62125 -36.60329 -35.54510 -33.07330 -31.94001 -29.61112 -28.67106 -27.32138 -25.25869 -24.10950 -22.98361 -21.49524 -20.39197 -19.25558 -16.43193 -16.28630 -16.16969 -15.51439 -15.16354 -14.92526 -14.56808 -14.34990 -13.78549 -13.63879 -13.07673 -12.61663 -12.44505 -12.10925 -11.89487 -11.74859 -11.56980 -11.43307 -11.25277 -11.09293 -10.79767 -10.66293 -10.46312 -10.24826 -10.12399 -9.49686 -9.13931 -8.99576 -8.56637 -8.32701 -7.55797 -5.95904 -3.98084 3.34996 3.41271 3.45986 3.65187 3.92447 4.50150 4.64953 4.86715 4.90184 5.14170 5.20169 5.21151 5.32991 5.38057 5.44835 5.48196 5.60043 5.60398 5.68414 5.80099 5.86496 5.97108 6.13808 6.23329 6.30722 6.37780 6.58867 6.76002 6.76380 6.98505 7.02052 7.37482 7.60141 7.71741 8.03773 8.13586 8.40692 8.47005 9.07960 9.65833 11.15145 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.006006 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.882211 B = 4660.503721 C = 5574.746563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.086 3.914 3 H 0.028 0.972 4 C 0.020 3.980 5 C -0.520 4.520 6 H 0.052 0.948 7 C 0.060 3.940 8 N -0.893 5.893 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.680 5.680 14 C 0.069 3.931 15 C 0.097 3.903 16 H 0.073 0.927 17 C 0.024 3.976 18 N -0.542 5.542 19 C 0.025 3.975 20 C 0.017 3.983 21 C 0.064 3.936 22 O -0.372 6.372 23 H 0.035 0.965 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.021 0.979 27 H 0.026 0.974 28 H 0.260 0.740 29 H 0.364 0.636 30 H 0.075 0.925 31 H 0.028 0.972 32 H 0.085 0.915 33 H 0.042 0.958 34 H 0.025 0.975 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.083 0.917 38 H 0.041 0.959 39 H 0.059 0.941 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.008 3.689 -18.239 18.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.046 0.954 4 C -0.017 4.017 5 C -0.558 4.558 6 H 0.071 0.929 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.315 5.315 14 C -0.061 4.061 15 C 0.038 3.962 16 H 0.091 0.909 17 C -0.105 4.105 18 N -0.267 5.267 19 C -0.123 4.123 20 C -0.112 4.112 21 C -0.013 4.013 22 O -0.290 6.290 23 H 0.054 0.946 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.039 0.961 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.186 0.814 30 H 0.093 0.907 31 H 0.046 0.954 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.077 0.923 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.800 2.957 -18.160 18.488 hybrid contribution 2.280 1.333 0.163 2.646 sum 0.480 4.290 -17.997 18.508 Atomic orbital electron populations 1.21799 0.96817 1.01312 0.99366 1.21621 0.93246 0.95873 0.91589 0.95428 1.19277 0.95460 0.96203 0.90746 1.21190 0.92223 1.34262 1.08150 0.92932 1.24973 0.98170 0.95216 0.95730 1.69966 1.35435 1.35834 1.11995 0.86640 0.86087 0.77403 0.78175 1.20864 1.21249 1.19796 1.60555 1.35543 1.31356 1.04031 1.21892 0.99190 0.94232 0.90832 1.22243 0.84997 0.95686 0.93224 0.90858 1.22813 1.00573 0.96066 0.91016 1.62205 1.22236 1.37526 1.04729 1.22374 1.01854 0.95262 0.92825 1.22841 0.89704 0.99088 0.99533 1.22602 0.99191 0.93822 0.85675 1.88085 1.31272 1.73114 1.36519 0.94604 0.92623 0.93364 0.96111 0.95582 0.93047 0.81408 0.90653 0.95353 0.89689 0.93999 0.95637 0.91340 0.91213 0.89891 0.94061 0.92321 0.88513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 9.41 37.15 0.35 -2.13 16 2 C 0.09 1.85 2.59 -67.72 -0.18 1.68 16 3 H 0.03 0.61 7.80 -51.93 -0.40 0.20 16 4 C 0.02 0.54 4.57 -27.88 -0.13 0.41 16 5 C -0.52 -14.74 8.12 -34.44 -0.28 -15.02 16 6 H 0.05 1.47 7.49 -52.49 -0.39 1.08 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -27.06 13.29 55.43 0.74 -26.33 16 9 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 13 N -0.68 -13.80 6.31 -106.73 -0.67 -14.47 16 14 C 0.07 1.15 5.22 -3.82 -0.02 1.13 16 15 C 0.10 1.46 3.08 -26.68 -0.08 1.38 16 16 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 17 C 0.02 0.30 4.95 -3.71 -0.02 0.28 16 18 N -0.54 -6.31 4.99 -242.59 -1.21 -7.52 16 19 C 0.03 0.23 9.60 60.06 0.58 0.80 16 20 C 0.02 0.19 5.66 -3.71 -0.02 0.16 16 21 C 0.06 0.83 7.01 37.21 0.26 1.09 16 22 O -0.37 -6.23 9.81 -35.23 -0.35 -6.58 16 23 H 0.03 0.57 7.45 -51.93 -0.39 0.19 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 29 H 0.36 8.31 6.60 -39.29 -0.26 8.05 16 30 H 0.08 1.12 7.44 -51.93 -0.39 0.73 16 31 H 0.03 0.50 8.05 -51.93 -0.42 0.08 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 318.06 15.07 4.79 4.79 Total: -1.00 -30.68 318.06 -8.66 -39.33 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.30 Total: 2.32 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 0.37 Total: -8.56 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: -1.15 Total: -48.31 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.35 Total: -6.58 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.68 -8.66 -39.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695777728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.063 kcal (2) G-P(sol) polarization free energy of solvation -30.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds