Wall clock time and date at job start Mon Mar 30 2020 04:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09000 * 109.47161 * 2 1 4 4 C 1.53001 * 109.47245 * 120.00015 * 2 1 3 5 5 C 1.50698 * 109.47216 * 184.99588 * 4 2 1 6 6 H 1.07999 * 120.00119 * 0.02562 * 5 4 2 7 7 C 1.37875 * 119.99942 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00209 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99951 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47214 * 90.00526 * 9 7 5 11 11 H 1.48506 * 109.47065 * 210.00443 * 9 7 5 12 12 H 1.48503 * 109.46987 * 330.00373 * 9 7 5 13 13 N 1.46901 * 109.47269 * 240.00137 * 2 1 3 14 14 C 1.46905 * 110.99870 * 84.99904 * 13 2 1 15 15 C 1.52993 * 109.47039 * 180.02562 * 14 13 2 16 16 H 1.08997 * 109.51339 * 59.99908 * 15 14 13 17 17 C 1.53103 * 109.50807 * 180.08732 * 15 14 13 18 18 N 1.47014 * 109.26021 * 176.78253 * 17 15 14 19 19 C 1.46900 * 111.00201 * 177.61041 * 18 17 15 20 20 C 1.47017 * 110.75026 * 301.38382 * 18 17 15 21 21 C 1.53097 * 109.26104 * 58.61704 * 20 18 17 22 22 O 1.43020 * 109.29420 * 303.17233 * 21 20 18 23 23 H 1.09004 * 109.47587 * 59.99932 * 1 2 3 24 24 H 1.09000 * 109.47161 * 179.97438 * 1 2 3 25 25 H 1.09006 * 109.47343 * 299.99942 * 1 2 3 26 26 H 1.08994 * 109.47082 * 305.00122 * 4 2 1 27 27 H 1.08999 * 109.46730 * 65.00057 * 4 2 1 28 28 H 0.96998 * 119.99857 * 179.97438 * 8 7 5 29 29 H 1.00901 * 111.00067 * 208.95080 * 13 2 1 30 30 H 1.09001 * 109.46798 * 300.00327 * 14 13 2 31 31 H 1.08998 * 109.46961 * 60.00043 * 14 13 2 32 32 H 1.08998 * 109.50573 * 296.71876 * 17 15 14 33 33 H 1.09001 * 109.50319 * 56.80174 * 17 15 14 34 34 H 1.08999 * 109.47173 * 59.99771 * 19 18 17 35 35 H 1.08995 * 109.47219 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.46708 * 300.00187 * 19 18 17 37 37 H 1.09004 * 109.50146 * 178.55112 * 20 18 17 38 38 H 1.08994 * 109.50929 * 298.68041 * 20 18 17 39 39 H 1.09006 * 109.50781 * 63.07990 * 21 20 18 40 40 H 1.08997 * 109.51081 * 183.21153 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5419 -0.6150 1.3126 6 1 4.0789 -0.0856 0.5395 7 6 4.2303 -1.1927 2.3582 8 7 3.5763 -1.8370 3.3000 9 14 6.0919 -1.0604 2.4372 10 1 6.4698 0.1622 3.1905 11 1 6.6445 -2.2555 3.1241 12 1 6.6415 -0.9828 1.0598 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3469 15 6 2.5950 -0.5330 -3.5745 16 1 1.9188 -1.3565 -3.8036 17 6 2.6628 0.4206 -4.7704 18 7 3.2283 -0.2906 -5.9262 19 6 3.2584 0.5742 -7.1132 20 6 4.5697 -0.8057 -5.6155 21 6 4.4828 -1.7470 -4.4112 22 8 3.9019 -1.0486 -3.3065 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7516 -1.7715 1.2055 28 1 4.0607 -2.2437 4.0354 29 1 2.9173 -1.1204 -1.0288 30 1 1.0870 0.6164 -2.5525 31 1 2.7588 1.0463 -2.1182 32 1 1.6598 0.7710 -5.0137 33 1 3.2955 1.2724 -4.5211 34 1 3.8720 1.4515 -6.9082 35 1 3.6807 0.0233 -7.9535 36 1 2.2442 0.8896 -7.3588 37 1 4.9586 -1.3504 -6.4759 38 1 5.2335 0.0261 -5.3801 39 1 3.8619 -2.6063 -4.6648 40 1 5.4829 -2.0866 -4.1417 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695777728.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:36 Heat of formation + Delta-G solvation = -74.193859 kcal Electronic energy + Delta-G solvation = -18188.029315 eV Core-core repulsion = 15422.279292 eV Total energy + Delta-G solvation = -2765.750024 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.68139 -38.19027 -36.61916 -34.96419 -33.53005 -30.94994 -29.68539 -29.26537 -26.47087 -25.08116 -24.91686 -22.73615 -21.50197 -20.93911 -18.51042 -17.57770 -17.24939 -16.80359 -16.49350 -16.20030 -15.98466 -15.76456 -15.03272 -14.89281 -14.65180 -13.92528 -13.57424 -13.46958 -13.29192 -13.18637 -13.03554 -12.87813 -12.66924 -12.56331 -12.42652 -12.29029 -12.06290 -11.87700 -11.55949 -11.15418 -10.99012 -10.58757 -10.55602 -9.44703 -9.17923 -8.18880 -6.28736 1.38128 1.39428 1.50860 2.40786 2.73772 2.86804 3.12728 3.41899 3.94800 3.99259 4.01731 4.12984 4.24065 4.29915 4.39149 4.49919 4.57116 4.62087 4.64341 4.68558 4.69676 4.76267 4.84290 4.93220 4.97806 5.03055 5.09348 5.23400 5.35447 5.50238 5.56045 5.84754 5.87292 5.95699 6.21859 6.27249 6.44778 6.65137 6.85737 7.39636 8.92800 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.023847 B = 0.006006 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.882211 B = 4660.503721 C = 5574.746563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.093 3.907 3 H 0.023 0.977 4 C 0.027 3.973 5 C -0.532 4.532 6 H 0.051 0.949 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.959 3.041 10 H -0.274 1.274 11 H -0.281 1.281 12 H -0.268 1.268 13 N -0.683 5.683 14 C 0.071 3.929 15 C 0.100 3.900 16 H 0.067 0.933 17 C 0.032 3.968 18 N -0.552 5.552 19 C 0.025 3.975 20 C 0.021 3.979 21 C 0.057 3.943 22 O -0.406 6.406 23 H 0.065 0.935 24 H 0.049 0.951 25 H 0.053 0.947 26 H -0.003 1.003 27 H -0.003 1.003 28 H 0.263 0.737 29 H 0.346 0.654 30 H 0.099 0.901 31 H 0.018 0.982 32 H 0.103 0.897 33 H 0.035 0.965 34 H 0.026 0.974 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.035 0.965 39 H 0.059 0.941 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 4.453 -20.245 20.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.017 4.017 3 H 0.041 0.959 4 C -0.010 4.010 5 C -0.570 4.570 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.784 3.216 10 H -0.199 1.199 11 H -0.206 1.206 12 H -0.192 1.192 13 N -0.316 5.316 14 C -0.059 4.059 15 C 0.042 3.958 16 H 0.085 0.915 17 C -0.097 4.097 18 N -0.277 5.277 19 C -0.123 4.123 20 C -0.107 4.107 21 C -0.019 4.019 22 O -0.325 6.325 23 H 0.084 0.916 24 H 0.068 0.932 25 H 0.072 0.928 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.072 0.928 29 H 0.166 0.834 30 H 0.117 0.883 31 H 0.036 0.964 32 H 0.121 0.879 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.101 0.899 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.053 0.947 39 H 0.077 0.923 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.397 3.738 -20.193 20.584 hybrid contribution 2.133 1.070 0.766 2.506 sum 0.736 4.808 -19.427 20.027 Atomic orbital electron populations 1.21707 0.94069 1.01523 1.01147 1.21468 0.95390 0.94687 0.90126 0.95921 1.19139 0.94763 0.94749 0.92368 1.21486 0.93380 1.34071 1.08099 0.93032 1.25855 1.03267 0.94786 0.95328 1.70090 1.37480 1.36741 1.12689 0.85539 0.79948 0.77719 0.78392 1.19930 1.20621 1.19199 1.60605 1.34329 1.32176 1.04452 1.22007 1.00404 0.93427 0.90093 1.22174 0.84367 0.95841 0.93403 0.91501 1.22694 1.01612 0.94957 0.90430 1.62228 1.22324 1.38145 1.05029 1.22449 1.02737 0.95078 0.91998 1.22814 0.89650 0.98679 0.99536 1.22805 0.99428 0.94078 0.85625 1.88032 1.31996 1.73784 1.38709 0.91600 0.93191 0.92796 0.98473 0.98482 0.92805 0.83438 0.88320 0.96367 0.87867 0.94698 0.95571 0.89877 0.90177 0.87487 0.94689 0.92252 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.50 9.41 71.98 0.68 -3.83 16 2 C 0.09 4.02 2.59 44.91 0.12 4.13 16 3 H 0.02 1.00 7.80 -2.39 -0.02 0.98 16 4 C 0.03 1.47 4.57 29.85 0.14 1.61 16 5 C -0.53 -30.80 8.12 25.60 0.21 -30.59 16 6 H 0.05 2.93 7.49 -2.91 -0.02 2.91 16 7 C 0.01 0.34 5.46 84.65 0.46 0.80 16 8 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.96 45.54 29.54 68.60 2.03 47.56 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 N -0.68 -27.76 6.31 -491.58 -3.10 -30.86 16 14 C 0.07 2.28 5.22 86.30 0.45 2.73 16 15 C 0.10 2.93 3.08 30.63 0.09 3.02 16 16 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 17 C 0.03 0.73 4.95 86.32 0.43 1.16 16 18 N -0.55 -11.55 4.99 -921.42 -4.59 -16.14 16 19 C 0.02 0.38 9.60 127.69 1.23 1.60 16 20 C 0.02 0.44 5.66 86.31 0.49 0.92 16 21 C 0.06 1.43 7.01 72.01 0.50 1.93 16 22 O -0.41 -13.52 9.81 -148.98 -1.46 -14.98 16 23 H 0.07 1.94 7.45 -2.39 -0.02 1.92 16 24 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 26 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.35 16.17 6.60 -89.69 -0.59 15.58 16 30 H 0.10 2.70 7.44 -2.39 -0.02 2.68 16 31 H 0.02 0.63 8.05 -2.39 -0.02 0.61 16 32 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.03 0.39 8.14 -2.39 -0.02 0.38 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 37 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -66.48 318.06 -1.66 -68.14 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.39 Total: 19.93 kcal Atomic # 6 Polarization: -21.30 SS G_CDS: 4.79 Total: -16.50 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -7.41 Total: -104.15 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -1.46 Total: -14.98 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -66.48 -1.66 -68.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695777728.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.049 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds