Wall clock time and date at job start Mon Mar 30 2020 04:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47014 * 2 1 4 4 C 1.53001 * 109.47476 * 120.00149 * 2 1 3 5 5 C 1.50700 * 109.47460 * 184.99920 * 4 2 1 6 6 H 1.07999 * 119.99774 * 0.02562 * 5 4 2 7 7 C 1.37880 * 119.99962 * 179.97438 * 5 4 2 8 8 N 1.31506 * 120.00115 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99831 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47180 * 59.99722 * 9 7 5 11 11 H 1.48490 * 109.47051 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46951 * 300.00351 * 9 7 5 13 13 N 1.46908 * 109.47065 * 240.00045 * 2 1 3 14 14 C 1.46901 * 111.00035 * 84.99848 * 13 2 1 15 15 C 1.52992 * 109.47225 * 179.97438 * 14 13 2 16 16 H 1.08995 * 109.50698 * 305.09424 * 15 14 13 17 17 C 1.53090 * 109.50858 * 184.99914 * 15 14 13 18 18 N 1.47009 * 109.26111 * 183.21903 * 17 15 14 19 19 C 1.46906 * 111.00252 * 182.39276 * 18 17 15 20 20 C 1.47020 * 110.75180 * 58.61704 * 18 17 15 21 21 C 1.53097 * 109.25663 * 301.38207 * 20 18 17 22 22 O 1.43021 * 109.25605 * 56.85187 * 21 20 18 23 23 H 1.09008 * 109.46741 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.46866 * 299.99410 * 1 2 3 25 25 H 1.08992 * 109.47241 * 59.99994 * 1 2 3 26 26 H 1.09001 * 109.46814 * 304.99861 * 4 2 1 27 27 H 1.09000 * 109.46863 * 64.99684 * 4 2 1 28 28 H 0.96996 * 120.00139 * 179.97438 * 8 7 5 29 29 H 1.00903 * 111.00072 * 208.95216 * 13 2 1 30 30 H 1.09007 * 109.46792 * 59.99808 * 14 13 2 31 31 H 1.08994 * 109.46722 * 300.00497 * 14 13 2 32 32 H 1.08999 * 109.51016 * 63.28280 * 17 15 14 33 33 H 1.08998 * 109.54428 * 303.17786 * 17 15 14 34 34 H 1.09001 * 109.46544 * 60.00029 * 19 18 17 35 35 H 1.09001 * 109.47272 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.47033 * 300.00085 * 19 18 17 37 37 H 1.08998 * 109.50492 * 61.31935 * 20 18 17 38 38 H 1.09007 * 109.50106 * 181.45086 * 20 18 17 39 39 H 1.08995 * 109.50808 * 296.91455 * 21 20 18 40 40 H 1.08995 * 109.54142 * 176.80219 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3127 6 1 4.0790 -0.0855 0.5396 7 6 4.2305 -1.1927 2.3583 8 7 3.5765 -1.8370 3.2999 9 14 6.0921 -1.0603 2.4373 10 1 6.4845 0.3707 2.4965 11 1 6.5871 -1.7604 3.6496 12 1 6.6846 -1.6863 1.2280 13 7 2.0197 -0.6925 -1.1995 14 6 2.0824 0.2226 -2.3470 15 6 2.5962 -0.5328 -3.5742 16 1 3.5512 -1.0026 -3.3390 17 6 2.7804 0.4459 -4.7369 18 7 3.1999 -0.2968 -5.9342 19 6 3.4430 0.6143 -7.0607 20 6 2.2043 -1.3189 -6.2886 21 6 2.0259 -2.2800 -5.1104 22 8 1.6486 -1.5367 -3.9482 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.6055 -0.2617 2.1369 27 1 1.7517 -1.7715 1.2055 28 1 4.0609 -2.2437 4.0353 29 1 2.9174 -1.1205 -1.0288 30 1 2.7589 1.0462 -2.1182 31 1 1.0871 0.6163 -2.5525 32 1 3.5437 1.1795 -4.4777 33 1 1.8382 0.9562 -4.9367 34 1 4.2296 1.3201 -6.7937 35 1 3.7524 0.0388 -7.9332 36 1 2.5279 1.1599 -7.2907 37 1 1.2525 -0.8374 -6.5130 38 1 2.5472 -1.8735 -7.1621 39 1 2.9642 -2.8011 -4.9204 40 1 1.2478 -3.0058 -5.3466 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695777740.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:40 Heat of formation + Delta-G solvation = -49.957183 kcal Electronic energy + Delta-G solvation = -18082.181488 eV Core-core repulsion = 15317.482445 eV Total energy + Delta-G solvation = -2764.699043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60947 -36.61929 -35.54631 -33.10634 -31.96362 -29.65630 -28.62390 -27.33283 -25.25083 -24.12438 -23.00125 -21.51503 -20.45730 -19.25235 -16.49833 -16.29323 -16.21197 -15.45842 -15.08483 -14.91742 -14.65225 -14.29542 -13.80153 -13.67458 -13.05884 -12.51837 -12.45007 -12.22345 -12.02282 -11.76137 -11.54914 -11.49543 -11.20662 -11.06683 -10.85541 -10.62877 -10.50515 -10.29276 -10.09000 -9.48658 -9.17365 -9.02903 -8.56600 -8.36095 -7.53560 -5.99346 -4.02447 3.33005 3.38014 3.39743 3.64951 3.91970 4.45746 4.63359 4.85418 4.89822 5.12415 5.16659 5.18942 5.31511 5.35249 5.43029 5.46441 5.59964 5.60945 5.68606 5.77740 5.82132 6.03100 6.04863 6.24279 6.30397 6.39778 6.60376 6.75807 6.76465 7.00302 7.01770 7.39485 7.58316 7.67850 8.00741 8.13013 8.34601 8.42000 9.03449 9.61386 11.11590 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.025282 B = 0.005361 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.230681 B = 5222.097847 C = 5786.956623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.088 3.912 3 H 0.027 0.973 4 C 0.020 3.980 5 C -0.524 4.524 6 H 0.050 0.950 7 C 0.061 3.939 8 N -0.891 5.891 9 Si 0.889 3.111 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.674 5.674 14 C 0.068 3.932 15 C 0.098 3.902 16 H 0.067 0.933 17 C 0.024 3.976 18 N -0.543 5.543 19 C 0.025 3.975 20 C 0.017 3.983 21 C 0.061 3.939 22 O -0.359 6.359 23 H 0.055 0.945 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.021 0.979 27 H 0.027 0.973 28 H 0.261 0.739 29 H 0.353 0.647 30 H 0.038 0.962 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.025 0.975 37 H 0.040 0.960 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.262 3.484 -18.473 18.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.021 4.021 3 H 0.045 0.955 4 C -0.017 4.017 5 C -0.562 4.562 6 H 0.069 0.931 7 C -0.141 4.141 8 N -0.530 5.530 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.308 5.308 14 C -0.062 4.062 15 C 0.040 3.960 16 H 0.084 0.916 17 C -0.105 4.105 18 N -0.268 5.268 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.017 4.017 22 O -0.277 6.277 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.039 0.961 27 H 0.045 0.955 28 H 0.071 0.929 29 H 0.174 0.826 30 H 0.056 0.944 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.583 2.860 -18.247 18.649 hybrid contribution 1.367 1.111 -0.124 1.766 sum -1.217 3.971 -18.371 18.834 Atomic orbital electron populations 1.21779 0.96737 1.01396 0.99273 1.21615 0.93427 0.95682 0.91420 0.95491 1.19276 0.95329 0.96288 0.90787 1.21134 0.92262 1.34544 1.08282 0.93131 1.24980 0.98172 0.95196 0.95706 1.69946 1.35574 1.35534 1.11932 0.86705 0.85989 0.78114 0.77467 1.20396 1.21275 1.20204 1.60470 1.34708 1.31699 1.03887 1.21895 1.00391 0.93714 0.90208 1.22189 0.92907 0.88364 0.92561 0.91552 1.22812 0.99933 0.96655 0.91062 1.62188 1.44603 1.15012 1.04962 1.22375 1.00277 0.96076 0.93562 1.22841 0.93963 0.94893 0.99423 1.22615 1.01065 0.93252 0.84764 1.88159 1.45646 1.49579 1.44365 0.92581 0.93475 0.94570 0.96086 0.95513 0.92908 0.82563 0.94427 0.91190 0.89718 0.93928 0.91193 0.91335 0.95645 0.94131 0.89978 0.92451 0.88642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 9.42 37.16 0.35 -2.18 16 2 C 0.09 1.88 2.59 -67.71 -0.18 1.70 16 3 H 0.03 0.58 7.80 -51.93 -0.40 0.18 16 4 C 0.02 0.53 4.57 -27.88 -0.13 0.41 16 5 C -0.52 -14.51 8.12 -34.44 -0.28 -14.79 16 6 H 0.05 1.35 7.49 -52.49 -0.39 0.96 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.67 -13.54 6.26 -106.72 -0.67 -14.21 16 14 C 0.07 1.13 5.15 -3.83 -0.02 1.11 16 15 C 0.10 1.48 2.98 -26.69 -0.08 1.40 16 16 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 17 C 0.02 0.30 4.95 -3.72 -0.02 0.28 16 18 N -0.54 -6.34 4.99 -242.59 -1.21 -7.55 16 19 C 0.03 0.23 9.60 60.07 0.58 0.81 16 20 C 0.02 0.18 5.66 -3.71 -0.02 0.16 16 21 C 0.06 0.74 7.01 37.21 0.26 1.00 16 22 O -0.36 -5.74 10.42 -35.23 -0.37 -6.11 16 23 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 24 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.04 0.61 7.45 -51.93 -0.39 0.23 16 26 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.35 7.67 7.21 -39.29 -0.28 7.39 16 30 H 0.04 0.60 8.06 -51.92 -0.42 0.18 16 31 H 0.07 1.14 7.44 -51.93 -0.39 0.75 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 319.06 15.07 4.81 4.81 Total: -1.00 -30.32 319.06 -8.68 -38.99 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.33 Total: 1.97 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: 0.37 Total: -8.45 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -1.14 Total: -47.73 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.37 Total: -6.11 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.32 -8.68 -38.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695777740.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.963 kcal (2) G-P(sol) polarization free energy of solvation -30.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds