Wall clock time and date at job start Mon Mar 30 2020 04:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.46298 * 114.00096 * 2 1 4 4 C 1.46856 * 110.99758 * 120.00615 * 3 2 1 5 5 C 1.53035 * 109.51229 * 185.83547 * 4 3 2 6 6 C 1.53120 * 109.27950 * 300.82229 * 5 4 3 7 7 N 1.46899 * 109.52485 * 177.56383 * 6 5 4 8 8 C 1.46900 * 111.00064 * 152.06562 * 7 6 5 9 9 H 1.08993 * 109.47040 * 342.65233 * 8 7 6 10 10 C 1.52996 * 109.47000 * 102.65179 * 8 7 6 11 11 C 1.53001 * 109.46807 * 222.65335 * 8 7 6 12 12 C 1.50693 * 109.47210 * 65.00245 * 11 8 7 13 13 H 1.08001 * 119.99995 * 359.97438 * 12 11 8 14 14 C 1.37883 * 120.00061 * 180.02562 * 12 11 8 15 15 N 1.31513 * 119.99767 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00086 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46900 * 60.00023 * 16 14 12 18 18 H 1.48495 * 109.47079 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47245 * 300.00005 * 16 14 12 20 20 C 1.53120 * 109.15868 * 57.65363 * 6 5 4 21 21 C 1.46822 * 110.98566 * 244.21573 * 3 2 1 22 22 H 1.09010 * 109.46840 * 299.99620 * 1 2 3 23 23 H 1.09004 * 109.47337 * 59.99517 * 1 2 3 24 24 H 1.08997 * 109.47409 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46149 * 65.81893 * 4 3 2 26 26 H 1.09005 * 109.45964 * 305.84238 * 4 3 2 27 27 H 1.08996 * 109.50792 * 60.76393 * 5 4 3 28 28 H 1.09004 * 109.50050 * 180.88021 * 5 4 3 29 29 H 1.09005 * 109.52392 * 297.68903 * 6 5 4 30 30 H 1.00907 * 110.99586 * 276.01817 * 7 6 5 31 31 H 1.09007 * 109.47309 * 53.43061 * 10 8 7 32 32 H 1.09000 * 109.46827 * 173.42521 * 10 8 7 33 33 H 1.08996 * 109.47299 * 293.42527 * 10 8 7 34 34 H 1.09000 * 109.46988 * 185.00101 * 11 8 7 35 35 H 1.09004 * 109.46841 * 304.99897 * 11 8 7 36 36 H 0.97002 * 120.00129 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.49985 * 62.29148 * 20 6 5 38 38 H 1.09002 * 109.50154 * 182.40639 * 20 6 5 39 39 H 1.09000 * 109.47139 * 54.14418 * 21 3 2 40 40 H 1.09006 * 109.45871 * 294.16344 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.8644 1.5383 1.1873 5 6 3.3509 2.9887 1.2286 6 6 4.1496 3.2905 -0.0425 7 7 4.5697 4.6981 -0.0358 8 6 5.8108 4.8807 -0.8003 9 1 6.2991 3.9158 -0.9361 10 6 5.4833 5.4836 -2.1678 11 6 6.7452 5.8225 -0.0382 12 6 7.1658 5.1743 1.2556 13 1 6.8025 4.1894 1.5092 14 6 8.0135 5.8392 2.1161 15 7 8.4554 7.0388 1.8075 16 14 8.5342 5.0361 3.7202 17 1 9.2434 3.7641 3.4296 18 1 9.4413 5.9501 4.4598 19 1 7.3325 4.7553 4.5462 20 6 3.2668 3.0257 -1.2653 21 6 2.7826 1.5743 -1.2344 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.7230 0.8683 1.1427 26 1 2.2831 1.3246 2.0843 27 1 2.4933 3.6588 1.2871 28 1 3.9874 3.1343 2.1015 29 1 5.0292 2.6479 -0.0812 30 1 3.8369 5.2958 -0.3877 31 1 4.8927 6.3899 -2.0333 32 1 6.4093 5.7273 -2.6886 33 1 4.9145 4.7632 -2.7557 34 1 7.6271 6.0285 -0.6448 35 1 6.2249 6.7562 0.1754 36 1 9.0515 7.5068 2.4130 37 1 2.4077 3.6964 -1.2460 38 1 3.8432 3.1978 -2.1743 39 1 2.1423 1.3866 -2.0962 40 1 3.6417 0.9042 -1.2674 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:53 Heat of formation + Delta-G solvation = -8.587396 kcal Electronic energy + Delta-G solvation = -18210.699092 eV Core-core repulsion = 15447.793978 eV Total energy + Delta-G solvation = -2762.905114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.97887 -36.81298 -35.15873 -32.64470 -31.19191 -30.82082 -27.98852 -27.24055 -25.93698 -23.11993 -22.95634 -22.16512 -20.21771 -19.15530 -17.31644 -16.19495 -15.46389 -15.41317 -14.97786 -14.55178 -14.30384 -14.10990 -13.61725 -13.40837 -12.94564 -12.78130 -12.66577 -12.11228 -12.02601 -11.69872 -11.51502 -11.24628 -11.18099 -10.89634 -10.78892 -10.63548 -10.45666 -10.11765 -10.00684 -9.98433 -9.23867 -8.92455 -8.74983 -8.21473 -7.52260 -5.84329 -3.81747 2.50995 3.42034 3.46129 3.48952 4.57831 4.59101 4.73463 4.93488 5.14883 5.18021 5.33996 5.37318 5.38990 5.45835 5.52615 5.57356 5.61642 5.74721 5.76305 5.80058 5.82626 5.92062 5.99725 6.06275 6.20290 6.36443 6.44099 6.53336 6.64844 6.80560 6.97195 7.08889 7.60527 7.73434 8.08113 8.11025 8.21551 8.64469 9.22529 9.78972 11.27878 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027611 B = 0.005659 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.855444 B = 4946.839227 C = 5773.322926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.273 6.273 3 N -0.362 5.362 4 C 0.044 3.956 5 C -0.100 4.100 6 C 0.087 3.913 7 N -0.657 5.657 8 C 0.089 3.911 9 H 0.057 0.943 10 C -0.175 4.175 11 C 0.034 3.966 12 C -0.487 4.487 13 H 0.054 0.946 14 C 0.050 3.950 15 N -0.904 5.904 16 Si 0.888 3.112 17 H -0.280 1.280 18 H -0.290 1.290 19 H -0.278 1.278 20 C -0.143 4.143 21 C 0.047 3.953 22 H 0.043 0.957 23 H 0.041 0.959 24 H 0.084 0.916 25 H 0.044 0.956 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.330 0.670 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.038 0.962 34 H 0.014 0.986 35 H 0.018 0.982 36 H 0.257 0.743 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.813 -10.177 -5.897 18.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.276 6.276 3 N -0.132 5.132 4 C -0.085 4.085 5 C -0.139 4.139 6 C -0.024 4.024 7 N -0.286 5.286 8 C -0.021 4.021 9 H 0.075 0.925 10 C -0.234 4.234 11 C -0.003 4.003 12 C -0.525 4.525 13 H 0.072 0.928 14 C -0.149 4.149 15 N -0.545 5.545 16 Si 0.716 3.284 17 H -0.206 1.206 18 H -0.216 1.216 19 H -0.204 1.204 20 C -0.183 4.183 21 C -0.082 4.082 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.102 0.898 25 H 0.062 0.938 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.148 0.852 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.057 0.943 34 H 0.032 0.968 35 H 0.037 0.963 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -13.637 -9.942 -5.192 17.657 hybrid contribution 0.469 -0.939 -0.064 1.052 sum -13.168 -10.881 -5.256 17.873 Atomic orbital electron populations 1.22558 0.81038 1.01271 1.00465 1.90660 1.20525 1.19539 1.96896 1.67601 1.34890 1.07172 1.03534 1.22458 0.95555 0.98013 0.92465 1.21593 0.99998 0.92843 0.99420 1.21762 0.96410 0.91721 0.92484 1.60555 1.05711 1.03615 1.58708 1.21882 0.90741 0.99788 0.89643 0.92481 1.22552 1.01401 1.00388 0.99060 1.19122 0.92448 0.94184 0.94575 1.21071 1.25723 1.02312 1.03429 0.92764 1.24988 0.96814 0.95005 0.98063 1.69950 1.34625 1.12827 1.37116 0.86733 0.78330 0.79004 0.84301 1.20636 1.21626 1.20389 1.22521 1.00425 0.94817 1.00539 1.22328 0.96648 0.97227 0.92020 0.93803 0.94012 0.89793 0.93798 0.90120 0.91087 0.89346 0.90731 0.85197 0.92865 0.92422 0.94331 0.96778 0.96336 0.93319 0.90924 0.90758 0.90569 0.93854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 11.51 101.05 1.16 1.60 16 2 O -0.27 -3.67 10.96 -13.92 -0.15 -3.82 16 3 N -0.36 -4.84 4.99 -113.83 -0.57 -5.41 16 4 C 0.04 0.58 5.99 -3.83 -0.02 0.56 16 5 C -0.10 -1.44 5.70 -26.65 -0.15 -1.60 16 6 C 0.09 1.33 2.52 -67.59 -0.17 1.16 16 7 N -0.66 -11.72 5.84 -99.61 -0.58 -12.31 16 8 C 0.09 1.74 2.64 -67.71 -0.18 1.56 16 9 H 0.06 1.15 7.14 -51.93 -0.37 0.78 16 10 C -0.18 -2.83 9.16 37.16 0.34 -2.49 16 11 C 0.03 0.87 4.65 -27.89 -0.13 0.74 16 12 C -0.49 -13.67 8.84 -34.44 -0.30 -13.97 16 13 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 14 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 15 N -0.90 -27.56 13.29 55.43 0.74 -26.82 16 16 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 C -0.14 -1.80 5.38 -26.65 -0.14 -1.95 16 21 C 0.05 0.59 5.99 -3.85 -0.02 0.56 16 22 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 23 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 29 H 0.07 1.25 7.28 -51.93 -0.38 0.87 16 30 H 0.33 5.35 7.80 -39.29 -0.31 5.04 16 31 H 0.05 0.84 8.00 -51.92 -0.42 0.42 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.04 0.53 6.57 -51.93 -0.34 0.19 16 34 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 37 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 38 H 0.07 0.91 6.57 -51.93 -0.34 0.57 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 318.98 15.07 4.81 4.81 Total: -1.00 -30.68 318.98 -7.69 -38.37 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -7.19 Total: 0.52 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 0.28 Total: -12.47 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: -0.41 Total: -44.53 kcal Atomic # 8 Polarization: -3.67 SS G_CDS: -0.15 Total: -3.82 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.68 -7.69 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.779 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds