Wall clock time and date at job start Mon Mar 30 2020 04:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.46298 * 114.00096 * 2 1 4 4 C 1.46856 * 110.99758 * 120.00615 * 3 2 1 5 5 C 1.53035 * 109.51229 * 185.83547 * 4 3 2 6 6 C 1.53120 * 109.27950 * 300.82229 * 5 4 3 7 7 N 1.46899 * 109.52485 * 177.56383 * 6 5 4 8 8 C 1.46900 * 111.00064 * 152.06562 * 7 6 5 9 9 H 1.08993 * 109.47040 * 342.65233 * 8 7 6 10 10 C 1.52996 * 109.47000 * 102.65179 * 8 7 6 11 11 C 1.53001 * 109.46807 * 222.65335 * 8 7 6 12 12 C 1.50693 * 109.47210 * 65.00245 * 11 8 7 13 13 H 1.08001 * 119.99995 * 359.97438 * 12 11 8 14 14 C 1.37883 * 120.00061 * 180.02562 * 12 11 8 15 15 N 1.31513 * 119.99767 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00086 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.46900 * 60.00023 * 16 14 12 18 18 H 1.48495 * 109.47079 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47245 * 300.00005 * 16 14 12 20 20 C 1.53120 * 109.15868 * 57.65363 * 6 5 4 21 21 C 1.46822 * 110.98566 * 244.21573 * 3 2 1 22 22 H 1.09010 * 109.46840 * 299.99620 * 1 2 3 23 23 H 1.09004 * 109.47337 * 59.99517 * 1 2 3 24 24 H 1.08997 * 109.47409 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.46149 * 65.81893 * 4 3 2 26 26 H 1.09005 * 109.45964 * 305.84238 * 4 3 2 27 27 H 1.08996 * 109.50792 * 60.76393 * 5 4 3 28 28 H 1.09004 * 109.50050 * 180.88021 * 5 4 3 29 29 H 1.09005 * 109.52392 * 297.68903 * 6 5 4 30 30 H 1.00907 * 110.99586 * 276.01817 * 7 6 5 31 31 H 1.09007 * 109.47309 * 53.43061 * 10 8 7 32 32 H 1.09000 * 109.46827 * 173.42521 * 10 8 7 33 33 H 1.08996 * 109.47299 * 293.42527 * 10 8 7 34 34 H 1.09000 * 109.46988 * 185.00101 * 11 8 7 35 35 H 1.09004 * 109.46841 * 304.99897 * 11 8 7 36 36 H 0.97002 * 120.00129 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.49985 * 62.29148 * 20 6 5 38 38 H 1.09002 * 109.50154 * 182.40639 * 20 6 5 39 39 H 1.09000 * 109.47139 * 54.14418 * 21 3 2 40 40 H 1.09006 * 109.45871 * 294.16344 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3365 0.0000 4 6 2.8644 1.5383 1.1873 5 6 3.3509 2.9887 1.2286 6 6 4.1496 3.2905 -0.0425 7 7 4.5697 4.6981 -0.0358 8 6 5.8108 4.8807 -0.8003 9 1 6.2991 3.9158 -0.9361 10 6 5.4833 5.4836 -2.1678 11 6 6.7452 5.8225 -0.0382 12 6 7.1658 5.1743 1.2556 13 1 6.8025 4.1894 1.5092 14 6 8.0135 5.8392 2.1161 15 7 8.4554 7.0388 1.8075 16 14 8.5342 5.0361 3.7202 17 1 9.2434 3.7641 3.4296 18 1 9.4413 5.9501 4.4598 19 1 7.3325 4.7553 4.5462 20 6 3.2668 3.0257 -1.2653 21 6 2.7826 1.5743 -1.2344 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 3.7230 0.8683 1.1427 26 1 2.2831 1.3246 2.0843 27 1 2.4933 3.6588 1.2871 28 1 3.9874 3.1343 2.1015 29 1 5.0292 2.6479 -0.0812 30 1 3.8369 5.2958 -0.3877 31 1 4.8927 6.3899 -2.0333 32 1 6.4093 5.7273 -2.6886 33 1 4.9145 4.7632 -2.7557 34 1 7.6271 6.0285 -0.6448 35 1 6.2249 6.7562 0.1754 36 1 9.0515 7.5068 2.4130 37 1 2.4077 3.6964 -1.2460 38 1 3.8432 3.1978 -2.1743 39 1 2.1423 1.3866 -2.0962 40 1 3.6417 0.9042 -1.2674 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695781590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:52 Heat of formation + Delta-G solvation = -29.499801 kcal Electronic energy + Delta-G solvation = -18211.605922 eV Core-core repulsion = 15447.793978 eV Total energy + Delta-G solvation = -2763.811944 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13981 -38.03484 -36.42305 -34.64228 -32.59748 -31.90485 -29.48448 -28.88088 -26.82025 -25.03523 -24.05159 -23.37535 -21.70048 -20.49145 -18.44372 -18.21146 -16.68926 -16.48793 -16.39146 -16.18469 -15.66072 -15.17004 -14.77757 -14.53607 -14.39548 -14.06386 -13.92638 -13.66611 -13.43168 -13.16352 -13.07408 -12.71835 -12.48495 -12.42099 -12.23943 -12.07122 -11.88050 -11.84022 -11.55925 -11.04798 -10.95469 -10.86271 -10.45646 -9.77372 -8.94051 -8.07212 -6.11725 1.41746 1.44406 1.51601 1.55365 2.48538 3.23469 3.36468 3.64866 3.86364 4.04101 4.13864 4.28552 4.31489 4.35311 4.47558 4.52501 4.60216 4.63879 4.68798 4.71151 4.77730 4.81016 4.88778 4.92394 5.01311 5.10547 5.21792 5.30195 5.32379 5.36877 5.56227 5.71600 5.75444 5.93349 6.03855 6.38915 6.52467 6.83948 7.02701 7.53511 9.04907 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027611 B = 0.005659 C = 0.004849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.855444 B = 4946.839227 C = 5773.322926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.290 6.290 3 N -0.365 5.365 4 C 0.049 3.951 5 C -0.093 4.093 6 C 0.090 3.910 7 N -0.674 5.674 8 C 0.100 3.900 9 H 0.051 0.949 10 C -0.165 4.165 11 C 0.038 3.962 12 C -0.496 4.496 13 H 0.054 0.946 14 C -0.006 4.006 15 N -0.942 5.942 16 Si 0.954 3.046 17 H -0.271 1.271 18 H -0.288 1.288 19 H -0.271 1.271 20 C -0.129 4.129 21 C 0.048 3.952 22 H 0.045 0.955 23 H 0.047 0.953 24 H 0.107 0.893 25 H 0.034 0.966 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.341 0.659 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.070 0.930 34 H -0.013 1.013 35 H -0.010 1.010 36 H 0.258 0.742 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.356 -11.544 -6.228 20.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.294 6.294 3 N -0.135 5.135 4 C -0.079 4.079 5 C -0.132 4.132 6 C -0.020 4.020 7 N -0.304 5.304 8 C -0.009 4.009 9 H 0.069 0.931 10 C -0.224 4.224 11 C 0.000 4.000 12 C -0.535 4.535 13 H 0.072 0.928 14 C -0.202 4.202 15 N -0.584 5.584 16 Si 0.780 3.220 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.196 1.196 20 C -0.169 4.169 21 C -0.081 4.081 22 H 0.064 0.936 23 H 0.066 0.934 24 H 0.125 0.875 25 H 0.053 0.947 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.006 0.994 35 H 0.009 0.991 36 H 0.067 0.933 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.110 0.890 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -15.202 -11.324 -5.532 19.747 hybrid contribution 0.901 -0.531 0.036 1.047 sum -14.301 -11.855 -5.496 19.372 Atomic orbital electron populations 1.22778 0.79235 1.02929 1.00833 1.90645 1.22511 1.19269 1.97000 1.67602 1.34720 1.07666 1.03519 1.22349 0.95456 0.96847 0.93272 1.21475 0.99636 0.93856 0.98212 1.21703 0.96356 0.89674 0.94312 1.60336 1.05514 1.05530 1.59048 1.21509 0.90571 0.98003 0.90823 0.93122 1.22413 1.01739 1.01190 0.97026 1.19032 0.92541 0.94229 0.94200 1.21441 1.25333 1.02282 1.04425 0.92775 1.25845 0.97061 0.95566 1.01730 1.70088 1.35492 1.14332 1.38486 0.85676 0.78109 0.78234 0.80023 1.19647 1.21333 1.19613 1.22356 1.00135 0.95210 0.99204 1.22344 0.96657 0.96745 0.92344 0.93629 0.93399 0.87508 0.94711 0.89277 0.90542 0.91376 0.92602 0.84010 0.92410 0.92906 0.91114 0.99438 0.99142 0.93345 0.89951 0.89871 0.88972 0.94626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 11.51 113.37 1.30 1.97 16 2 O -0.29 -7.17 10.96 -50.16 -0.55 -7.72 16 3 N -0.37 -9.02 4.99 -514.04 -2.57 -11.58 16 4 C 0.05 1.27 5.99 86.32 0.52 1.78 16 5 C -0.09 -2.61 5.70 30.65 0.17 -2.44 16 6 C 0.09 2.65 2.52 45.00 0.11 2.76 16 7 N -0.67 -23.59 5.84 -469.07 -2.74 -26.33 16 8 C 0.10 3.92 2.64 44.91 0.12 4.04 16 9 H 0.05 2.03 7.14 -2.39 -0.02 2.01 16 10 C -0.17 -5.08 9.16 71.98 0.66 -4.42 16 11 C 0.04 1.97 4.65 29.85 0.14 2.11 16 12 C -0.50 -28.35 8.84 25.60 0.23 -28.12 16 13 H 0.05 3.03 7.74 -2.91 -0.02 3.00 16 14 C -0.01 -0.37 5.46 84.66 0.46 0.09 16 15 N -0.94 -58.60 13.29 21.45 0.28 -58.32 16 16 Si 0.95 45.80 29.54 68.60 2.03 47.82 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 19 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 20 C -0.13 -2.94 5.38 30.65 0.16 -2.78 16 21 C 0.05 1.09 5.99 86.33 0.52 1.60 16 22 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 23 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 24 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.09 2.12 8.14 -2.38 -0.02 2.10 16 27 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.06 1.86 7.28 -2.38 -0.02 1.84 16 30 H 0.34 10.55 7.80 -89.69 -0.70 9.85 16 31 H 0.06 1.72 8.00 -2.38 -0.02 1.70 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.73 6.57 -2.39 -0.02 1.72 16 34 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 35 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 36 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 37 H 0.08 1.76 8.09 -2.38 -0.02 1.74 16 38 H 0.08 1.77 6.57 -2.39 -0.02 1.75 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 Total: -1.00 -66.22 318.98 1.14 -65.08 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: 0.29 Total: 14.45 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 4.40 Total: -23.41 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -5.02 Total: -96.23 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.55 Total: -7.72 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Total: -66.22 1.14 -65.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.579 kcal (2) G-P(sol) polarization free energy of solvation -66.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds