Wall clock time and date at job start Mon Mar 30 2020 04:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 N 1.46298 * 114.00307 * 2 1 4 4 C 1.46843 * 111.00264 * 120.00009 * 3 2 1 5 5 C 1.53036 * 109.51654 * 174.15352 * 4 3 2 6 6 C 1.53126 * 109.27864 * 59.18477 * 5 4 3 7 7 N 1.46897 * 109.52390 * 182.44165 * 6 5 4 8 8 C 1.46901 * 110.99830 * 273.91847 * 7 6 5 9 9 H 1.08999 * 109.47066 * 35.81508 * 8 7 6 10 10 C 1.53001 * 109.47080 * 275.81214 * 8 7 6 11 11 C 1.53003 * 109.47195 * 155.80944 * 8 7 6 12 12 C 1.50697 * 109.47144 * 295.00627 * 11 8 7 13 13 H 1.08000 * 119.99944 * 359.97438 * 12 11 8 14 14 C 1.37873 * 119.99788 * 180.02562 * 12 11 8 15 15 N 1.31515 * 120.00321 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99867 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47269 * 59.99637 * 16 14 12 18 18 H 1.48497 * 109.47039 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.47223 * 299.99828 * 16 14 12 20 20 C 1.53122 * 109.15611 * 302.34690 * 6 5 4 21 21 C 1.46847 * 110.99080 * 355.79193 * 3 2 1 22 22 H 1.09007 * 109.47163 * 300.00563 * 1 2 3 23 23 H 1.09009 * 109.46648 * 59.99985 * 1 2 3 24 24 H 1.08990 * 109.47568 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46214 * 54.14184 * 4 3 2 26 26 H 1.09006 * 109.46244 * 294.16737 * 4 3 2 27 27 H 1.09004 * 109.50622 * 179.12113 * 5 4 3 28 28 H 1.08992 * 109.50564 * 299.20278 * 5 4 3 29 29 H 1.08996 * 109.51901 * 62.24679 * 6 5 4 30 30 H 1.00899 * 110.99986 * 149.96789 * 7 6 5 31 31 H 1.08999 * 109.47018 * 65.06105 * 10 8 7 32 32 H 1.09006 * 109.46898 * 185.05422 * 10 8 7 33 33 H 1.08997 * 109.46870 * 305.05332 * 10 8 7 34 34 H 1.09007 * 109.46455 * 54.99959 * 11 8 7 35 35 H 1.08995 * 109.47224 * 174.99886 * 11 8 7 36 36 H 0.97003 * 119.99884 * 180.02562 * 15 14 12 37 37 H 1.09001 * 109.49793 * 177.59384 * 20 6 5 38 38 H 1.08995 * 109.50302 * 297.71051 * 20 6 5 39 39 H 1.09001 * 109.46714 * 65.83927 * 21 3 2 40 40 H 1.08997 * 109.45434 * 305.85734 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.8644 1.5384 1.1872 5 6 3.5832 2.8853 1.0817 6 6 2.5448 4.0053 0.9718 7 7 3.2290 5.2953 0.8115 8 6 3.5816 5.8699 2.1167 9 1 3.8597 5.0699 2.8027 10 6 2.3796 6.6304 2.6805 11 6 4.7603 6.8309 1.9493 12 6 5.9786 6.0599 1.5108 13 1 5.9183 4.9913 1.3665 14 6 7.1705 6.7186 1.2950 15 7 7.2440 8.0198 1.4713 16 14 8.6809 5.7627 0.7522 17 1 8.4027 5.0909 -0.5426 18 1 9.8249 6.6955 0.5896 19 1 9.0157 4.7420 1.7776 20 6 1.6518 3.7451 -0.2446 21 6 0.9890 2.3732 -0.1006 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3634 -1.0275 0.0005 25 1 3.6011 0.7376 1.2512 26 1 2.2394 1.5292 2.0803 27 1 4.1947 3.0421 1.9703 28 1 4.2193 2.8900 0.1967 29 1 1.9340 4.0255 1.8744 30 1 2.6676 5.9380 0.2732 31 1 1.5696 5.9301 2.8841 32 1 2.6677 7.1314 3.6048 33 1 2.0455 7.3715 1.9544 34 1 4.5142 7.5800 1.1966 35 1 4.9649 7.3240 2.8995 36 1 8.0825 8.4832 1.3190 37 1 0.8835 4.5160 -0.3035 38 1 2.2570 3.7635 -1.1509 39 1 0.3731 2.3600 0.7986 40 1 0.3638 2.1787 -0.9720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695781592.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:56 Heat of formation + Delta-G solvation = -3.642013 kcal Electronic energy + Delta-G solvation = -18306.276782 eV Core-core repulsion = 15543.586116 eV Total energy + Delta-G solvation = -2762.690666 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.26075 -37.08425 -35.07698 -32.61869 -31.27411 -30.79217 -28.04436 -27.22170 -26.51655 -23.16200 -23.08717 -21.97584 -19.69450 -19.38786 -17.64990 -16.19644 -15.69945 -15.40141 -15.22828 -14.55278 -14.26571 -14.06758 -13.86070 -13.51520 -12.86373 -12.83127 -12.53865 -12.10546 -12.00953 -11.74415 -11.58271 -11.36157 -11.20273 -10.96776 -10.72081 -10.60734 -10.52767 -10.36486 -10.18940 -9.94834 -9.22282 -8.96308 -8.61390 -8.21512 -7.59173 -5.84251 -3.81735 2.61386 3.44405 3.48058 3.52053 4.25308 4.59518 4.60809 4.71409 4.95130 4.99331 5.09842 5.14084 5.23918 5.38742 5.40497 5.46714 5.52655 5.61074 5.71268 5.72859 5.82297 5.88732 5.98189 6.03483 6.13740 6.25985 6.46597 6.61087 6.64162 6.71387 7.03780 7.08796 7.57960 7.71181 8.03116 8.08553 8.19573 8.63412 9.23355 9.79632 11.27914 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027864 B = 0.005733 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.629149 B = 4883.146344 C = 5601.175465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.246 6.246 3 N -0.325 5.325 4 C 0.031 3.969 5 C -0.101 4.101 6 C 0.085 3.915 7 N -0.657 5.657 8 C 0.089 3.911 9 H 0.064 0.936 10 C -0.180 4.180 11 C 0.034 3.966 12 C -0.487 4.487 13 H 0.059 0.941 14 C 0.050 3.950 15 N -0.906 5.906 16 Si 0.889 3.111 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.280 1.280 20 C -0.115 4.115 21 C 0.011 3.989 22 H 0.039 0.961 23 H 0.050 0.950 24 H 0.089 0.911 25 H 0.089 0.911 26 H 0.037 0.963 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.332 0.668 31 H 0.035 0.965 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.016 0.984 35 H 0.016 0.984 36 H 0.257 0.743 37 H 0.071 0.929 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.816 -10.722 -1.130 18.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.250 6.250 3 N -0.093 5.093 4 C -0.098 4.098 5 C -0.140 4.140 6 C -0.026 4.026 7 N -0.287 5.287 8 C -0.020 4.020 9 H 0.082 0.918 10 C -0.239 4.239 11 C -0.004 4.004 12 C -0.526 4.526 13 H 0.077 0.923 14 C -0.149 4.149 15 N -0.547 5.547 16 Si 0.717 3.283 17 H -0.203 1.203 18 H -0.217 1.217 19 H -0.206 1.206 20 C -0.154 4.154 21 C -0.118 4.118 22 H 0.058 0.942 23 H 0.069 0.931 24 H 0.107 0.893 25 H 0.107 0.893 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.151 0.849 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.034 0.966 35 H 0.034 0.966 36 H 0.067 0.933 37 H 0.090 0.910 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.655 -11.026 -1.650 17.628 hybrid contribution -0.823 0.023 0.861 1.191 sum -14.478 -11.003 -0.789 18.202 Atomic orbital electron populations 1.23019 0.83786 1.02898 1.00070 1.91222 1.18177 1.18939 1.96709 1.69466 1.12691 0.90200 1.36960 1.22701 0.96703 0.99920 0.90497 1.21609 0.97873 0.89888 1.04610 1.21551 0.93289 0.92209 0.95524 1.60547 1.46539 1.03400 1.18211 1.21839 0.94792 0.97143 0.88266 0.91785 1.22572 0.99235 1.00282 1.01814 1.19103 0.91013 0.93522 0.96737 1.21109 0.93670 0.94406 1.43389 0.92287 1.24998 0.98852 0.94786 0.96281 1.69955 1.26159 1.07592 1.50947 0.86714 0.82664 0.79630 0.79264 1.20306 1.21706 1.20564 1.21770 0.99081 0.93888 1.00634 1.22886 0.94845 0.92642 1.01454 0.94203 0.93132 0.89254 0.89297 0.94501 0.90090 0.89576 0.94926 0.84925 0.94634 0.92405 0.93103 0.96557 0.96577 0.93332 0.91042 0.89449 0.93820 0.89387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.01 9.98 101.05 1.01 1.01 16 2 O -0.25 -3.36 11.64 -13.92 -0.16 -3.52 16 3 N -0.33 -4.48 5.71 -113.82 -0.65 -5.13 16 4 C 0.03 0.42 5.99 -3.84 -0.02 0.40 16 5 C -0.10 -1.56 5.59 -26.65 -0.15 -1.71 16 6 C 0.08 1.25 2.36 -67.59 -0.16 1.09 16 7 N -0.66 -11.70 5.77 -99.61 -0.58 -12.27 16 8 C 0.09 1.74 2.35 -67.71 -0.16 1.58 16 9 H 0.06 1.29 7.22 -51.93 -0.37 0.92 16 10 C -0.18 -2.95 9.16 37.16 0.34 -2.61 16 11 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 12 C -0.49 -13.59 8.84 -34.44 -0.30 -13.89 16 13 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 14 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 15 N -0.91 -27.49 13.29 55.43 0.74 -26.75 16 16 Si 0.89 22.21 29.54 -169.99 -5.02 17.18 16 17 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 18 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 C -0.12 -1.42 5.35 -26.65 -0.14 -1.57 16 21 C 0.01 0.12 4.47 -3.83 -0.02 0.11 16 22 H 0.04 0.35 7.09 -51.93 -0.37 -0.01 16 23 H 0.05 0.43 6.61 -51.92 -0.34 0.09 16 24 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 1.33 7.53 -51.93 -0.39 0.94 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.03 0.48 7.11 -51.93 -0.37 0.11 16 30 H 0.33 5.52 8.05 -39.29 -0.32 5.20 16 31 H 0.03 0.51 7.45 -51.93 -0.39 0.12 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.80 8.04 -51.93 -0.42 0.39 16 34 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.04 0.47 7.12 -51.93 -0.37 0.10 16 40 H 0.09 0.88 6.57 -51.93 -0.34 0.54 16 LS Contribution 313.60 15.07 4.73 4.73 Total: -1.00 -30.73 313.60 -7.80 -38.54 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.02 Total: 0.74 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: 0.17 Total: -13.52 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.49 Total: -44.16 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.16 Total: -3.52 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.73 -7.80 -38.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695781592.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.896 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds