Wall clock time and date at job start Mon Mar 30 2020 04:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46921 * 2 1 4 4 N 1.46906 * 109.46889 * 239.99991 * 2 1 3 5 5 C 1.53000 * 109.46859 * 120.00369 * 2 1 3 6 6 H 1.09004 * 109.54126 * 300.10501 * 5 2 1 7 7 C 1.53104 * 109.50543 * 179.97438 * 5 2 1 8 8 N 1.47011 * 109.25755 * 183.21359 * 7 5 2 9 9 C 1.46903 * 110.99847 * 182.39489 * 8 7 5 10 10 H 1.09003 * 109.46910 * 188.45826 * 9 8 7 11 11 C 1.52995 * 109.47023 * 308.45677 * 9 8 7 12 12 C 1.53002 * 109.47259 * 68.45849 * 9 8 7 13 13 C 1.50694 * 109.47385 * 63.76213 * 12 9 8 14 14 H 1.08006 * 119.99658 * 5.07294 * 13 12 9 15 15 C 1.37876 * 120.00193 * 185.07059 * 13 12 9 16 16 N 1.31510 * 119.99669 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00004 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46673 * 90.00106 * 17 15 13 19 19 H 1.48501 * 109.47065 * 210.00175 * 17 15 13 20 20 H 1.48496 * 109.47330 * 330.00146 * 17 15 13 21 21 C 1.47010 * 110.75189 * 58.61792 * 8 7 5 22 22 C 1.53098 * 109.25861 * 301.38116 * 21 8 7 23 23 O 1.43016 * 109.25907 * 56.85092 * 22 21 8 24 24 H 1.09000 * 109.47045 * 60.00088 * 1 2 3 25 25 H 1.09003 * 109.47042 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47312 * 299.99898 * 1 2 3 27 27 H 1.00899 * 110.99827 * 296.04539 * 4 2 1 28 28 H 1.00894 * 110.99899 * 60.00579 * 4 2 1 29 29 H 1.09006 * 109.50232 * 63.27787 * 7 5 2 30 30 H 1.08997 * 109.54305 * 303.17334 * 7 5 2 31 31 H 1.08998 * 109.47139 * 59.99828 * 11 9 8 32 32 H 1.08995 * 109.47466 * 180.02562 * 11 9 8 33 33 H 1.08999 * 109.47089 * 300.00242 * 11 9 8 34 34 H 1.08996 * 109.46638 * 183.76718 * 12 9 8 35 35 H 1.09005 * 109.46893 * 303.76220 * 12 9 8 36 36 H 0.97004 * 119.99749 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.51004 * 61.31624 * 21 8 7 38 38 H 1.09004 * 109.50533 * 181.45195 * 21 8 7 39 39 H 1.09004 * 109.50525 * 296.91424 * 22 21 8 40 40 H 1.08994 * 109.50913 * 176.78694 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.6757 -0.2095 2.1400 7 6 3.5710 -0.7224 1.2497 8 7 4.0550 -1.4828 2.4111 9 6 5.5222 -1.4606 2.4807 10 1 5.8597 -2.1494 3.2551 11 6 6.1032 -1.8863 1.1309 12 6 5.9954 -0.0447 2.8159 13 6 5.4994 0.3395 4.1860 14 1 4.9764 -0.3843 4.7936 15 6 5.7132 1.6150 4.6640 16 7 6.3496 2.4964 3.9240 17 14 5.0977 2.0915 6.3621 18 1 6.1512 1.8052 7.3688 19 1 4.7740 3.5407 6.3827 20 1 3.8786 1.3074 6.6848 21 6 3.5500 -2.8631 2.3771 22 6 2.0192 -2.8406 2.3653 23 8 1.5674 -2.0712 1.2477 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7502 -1.6648 -1.1909 28 1 1.6962 -0.2350 -2.0385 29 1 3.9356 0.3032 1.3085 30 1 3.9356 -1.1863 0.3333 31 1 5.7657 -1.1975 0.3565 32 1 7.1918 -1.8702 1.1826 33 1 5.7660 -2.8949 0.8921 34 1 7.0848 -0.0130 2.8017 35 1 5.6019 0.6542 2.0778 36 1 6.4997 3.3939 4.2601 37 1 3.9136 -3.3617 1.4787 38 1 3.8993 -3.4002 3.2590 39 1 1.6547 -2.3902 3.2886 40 1 1.6409 -3.8594 2.2826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695837957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:22 Heat of formation + Delta-G solvation = -48.590009 kcal Electronic energy + Delta-G solvation = -18959.887915 eV Core-core repulsion = 16195.248158 eV Total energy + Delta-G solvation = -2764.639758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.57399 -36.63305 -35.31186 -32.76273 -30.83415 -30.17030 -28.55266 -27.27789 -26.08375 -23.78785 -23.11828 -21.20446 -19.94032 -18.66908 -16.66804 -16.15549 -15.88266 -15.51517 -14.67695 -14.45711 -14.14078 -13.84219 -13.78425 -13.52593 -12.96648 -12.85331 -12.54859 -12.05891 -11.80479 -11.60871 -11.41143 -11.26439 -11.08479 -10.83945 -10.66542 -10.51602 -10.37270 -10.04836 -9.91940 -9.34045 -9.03402 -8.90839 -8.56651 -8.23710 -7.40073 -5.86249 -3.83749 3.39559 3.45728 3.50615 4.01039 4.48185 4.58311 4.68118 5.02768 5.22465 5.37848 5.43587 5.49924 5.55430 5.58702 5.73286 5.79015 5.84721 5.88617 5.96501 6.00553 6.06412 6.11109 6.18004 6.27272 6.48949 6.50406 6.69697 6.79092 7.03942 7.23109 7.48903 7.55914 7.58272 7.71075 7.93832 8.05478 8.14866 8.60960 9.21342 9.77293 11.25687 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.007461 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.671636 B = 3751.713090 C = 4071.180738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.097 3.903 3 H 0.092 0.908 4 N -0.837 5.837 5 C 0.100 3.900 6 H 0.067 0.933 7 C 0.034 3.966 8 N -0.511 5.511 9 C 0.088 3.912 10 H 0.066 0.934 11 C -0.183 4.183 12 C 0.030 3.970 13 C -0.488 4.488 14 H 0.058 0.942 15 C 0.051 3.949 16 N -0.903 5.903 17 Si 0.888 3.112 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.275 1.275 21 C 0.016 3.984 22 C 0.069 3.931 23 O -0.389 6.389 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.059 0.941 27 H 0.345 0.655 28 H 0.335 0.665 29 H 0.089 0.911 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.038 0.962 34 H 0.015 0.985 35 H 0.023 0.977 36 H 0.257 0.743 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.540 -8.269 -7.793 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.015 4.015 3 H 0.110 0.890 4 N -0.367 5.367 5 C 0.042 3.958 6 H 0.085 0.915 7 C -0.094 4.094 8 N -0.235 5.235 9 C -0.020 4.020 10 H 0.085 0.915 11 C -0.242 4.242 12 C -0.007 4.007 13 C -0.526 4.526 14 H 0.076 0.924 15 C -0.149 4.149 16 N -0.544 5.544 17 Si 0.717 3.283 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.200 1.200 21 C -0.113 4.113 22 C -0.008 4.008 23 O -0.308 6.308 24 H 0.069 0.931 25 H 0.080 0.920 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.147 0.853 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.033 0.967 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.047 -7.751 -7.223 13.932 hybrid contribution -0.813 -0.078 0.296 0.869 sum -9.860 -7.830 -6.927 14.370 Atomic orbital electron populations 1.22544 0.97506 1.02325 1.01703 1.21467 0.92331 0.98015 0.89736 0.88970 1.58853 1.67105 1.07186 1.03538 1.22239 0.94125 0.82641 0.96771 0.91512 1.22629 0.93656 1.00752 0.92340 1.62367 1.10661 1.09901 1.40545 1.21904 0.84772 1.01415 0.93930 0.91544 1.22500 1.01302 0.99877 1.00490 1.19180 0.95520 0.88761 0.97205 1.21141 1.34461 0.96489 1.00524 0.92391 1.24991 0.95845 0.96819 0.97210 1.69966 1.42844 1.04703 1.36919 0.86658 0.79137 0.77394 0.85155 1.21031 1.21573 1.19987 1.22740 0.95700 0.92246 1.00635 1.22562 0.93494 0.95246 0.89476 1.87794 1.73083 1.23419 1.46518 0.93123 0.92032 0.92198 0.84190 0.85303 0.89247 0.92913 0.92421 0.92707 0.94291 0.96712 0.95899 0.93365 0.94898 0.90596 0.92644 0.89492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 9.34 37.16 0.35 -1.72 16 2 C 0.10 1.29 3.25 -67.71 -0.22 1.07 16 3 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 4 N -0.84 -10.27 8.44 -4.66 -0.04 -10.31 16 5 C 0.10 1.61 2.62 -26.68 -0.07 1.54 16 6 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 7 C 0.03 0.63 3.92 -3.71 -0.01 0.62 16 8 N -0.51 -9.97 4.34 -226.33 -0.98 -10.95 16 9 C 0.09 1.83 2.26 -67.71 -0.15 1.68 16 10 H 0.07 1.40 8.00 -51.93 -0.42 0.98 16 11 C -0.18 -3.31 8.39 37.16 0.31 -2.99 16 12 C 0.03 0.78 4.39 -27.88 -0.12 0.66 16 13 C -0.49 -13.75 8.80 -34.44 -0.30 -14.05 16 14 H 0.06 1.64 7.75 -52.48 -0.41 1.23 16 15 C 0.05 1.46 5.46 -17.82 -0.10 1.36 16 16 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 17 Si 0.89 22.15 29.54 -169.99 -5.02 17.13 16 18 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.02 0.25 5.41 -3.71 -0.02 0.23 16 22 C 0.07 1.00 7.01 37.21 0.26 1.26 16 23 O -0.39 -5.93 9.14 -35.23 -0.32 -6.25 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.73 7.69 -51.93 -0.40 0.33 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.34 4.22 8.37 -39.29 -0.33 3.89 16 28 H 0.33 3.36 9.04 -39.29 -0.36 3.01 16 29 H 0.09 1.91 6.40 -51.93 -0.33 1.58 16 30 H 0.05 0.97 5.73 -51.93 -0.30 0.68 16 31 H 0.06 1.07 6.37 -51.93 -0.33 0.73 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.04 0.63 6.82 -51.93 -0.35 0.28 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.02 0.63 6.44 -51.93 -0.33 0.29 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.03 0.52 6.81 -51.93 -0.35 0.17 16 38 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 307.83 15.07 4.64 4.64 Total: -1.00 -30.11 307.83 -7.91 -38.02 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -6.84 Total: 4.67 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: -0.08 Total: -10.35 kcal Atomic # 7 Polarization: -47.57 SS G_CDS: -0.29 Total: -47.86 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.32 Total: -6.25 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.11 -7.91 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.567 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds