Wall clock time and date at job start Mon Mar 30 2020 04:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.46921 * 2 1 4 4 N 1.46906 * 109.46889 * 239.99991 * 2 1 3 5 5 C 1.53000 * 109.46859 * 120.00369 * 2 1 3 6 6 H 1.09004 * 109.54126 * 300.10501 * 5 2 1 7 7 C 1.53104 * 109.50543 * 179.97438 * 5 2 1 8 8 N 1.47011 * 109.25755 * 183.21359 * 7 5 2 9 9 C 1.46903 * 110.99847 * 182.39489 * 8 7 5 10 10 H 1.09003 * 109.46910 * 188.45826 * 9 8 7 11 11 C 1.52995 * 109.47023 * 308.45677 * 9 8 7 12 12 C 1.53002 * 109.47259 * 68.45849 * 9 8 7 13 13 C 1.50694 * 109.47385 * 63.76213 * 12 9 8 14 14 H 1.08006 * 119.99658 * 5.07294 * 13 12 9 15 15 C 1.37876 * 120.00193 * 185.07059 * 13 12 9 16 16 N 1.31510 * 119.99669 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 120.00004 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46673 * 90.00106 * 17 15 13 19 19 H 1.48501 * 109.47065 * 210.00175 * 17 15 13 20 20 H 1.48496 * 109.47330 * 330.00146 * 17 15 13 21 21 C 1.47010 * 110.75189 * 58.61792 * 8 7 5 22 22 C 1.53098 * 109.25861 * 301.38116 * 21 8 7 23 23 O 1.43016 * 109.25907 * 56.85092 * 22 21 8 24 24 H 1.09000 * 109.47045 * 60.00088 * 1 2 3 25 25 H 1.09003 * 109.47042 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47312 * 299.99898 * 1 2 3 27 27 H 1.00899 * 110.99827 * 296.04539 * 4 2 1 28 28 H 1.00894 * 110.99899 * 60.00579 * 4 2 1 29 29 H 1.09006 * 109.50232 * 63.27787 * 7 5 2 30 30 H 1.08997 * 109.54305 * 303.17334 * 7 5 2 31 31 H 1.08998 * 109.47139 * 59.99828 * 11 9 8 32 32 H 1.08995 * 109.47466 * 180.02562 * 11 9 8 33 33 H 1.08999 * 109.47089 * 300.00242 * 11 9 8 34 34 H 1.08996 * 109.46638 * 183.76718 * 12 9 8 35 35 H 1.09005 * 109.46893 * 303.76220 * 12 9 8 36 36 H 0.97004 * 119.99749 * 179.97438 * 16 15 13 37 37 H 1.08997 * 109.51004 * 61.31624 * 21 8 7 38 38 H 1.09004 * 109.50533 * 181.45195 * 21 8 7 39 39 H 1.09004 * 109.50525 * 296.91424 * 22 21 8 40 40 H 1.08994 * 109.50913 * 176.78694 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.6757 -0.2095 2.1400 7 6 3.5710 -0.7224 1.2497 8 7 4.0550 -1.4828 2.4111 9 6 5.5222 -1.4606 2.4807 10 1 5.8597 -2.1494 3.2551 11 6 6.1032 -1.8863 1.1309 12 6 5.9954 -0.0447 2.8159 13 6 5.4994 0.3395 4.1860 14 1 4.9764 -0.3843 4.7936 15 6 5.7132 1.6150 4.6640 16 7 6.3496 2.4964 3.9240 17 14 5.0977 2.0915 6.3621 18 1 6.1512 1.8052 7.3688 19 1 4.7740 3.5407 6.3827 20 1 3.8786 1.3074 6.6848 21 6 3.5500 -2.8631 2.3771 22 6 2.0192 -2.8406 2.3653 23 8 1.5674 -2.0712 1.2477 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.7502 -1.6648 -1.1909 28 1 1.6962 -0.2350 -2.0385 29 1 3.9356 0.3032 1.3085 30 1 3.9356 -1.1863 0.3333 31 1 5.7657 -1.1975 0.3565 32 1 7.1918 -1.8702 1.1826 33 1 5.7660 -2.8949 0.8921 34 1 7.0848 -0.0130 2.8017 35 1 5.6019 0.6542 2.0778 36 1 6.4997 3.3939 4.2601 37 1 3.9136 -3.3617 1.4787 38 1 3.8993 -3.4002 3.2590 39 1 1.6547 -2.3902 3.2886 40 1 1.6409 -3.8594 2.2826 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695837957.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:22 Heat of formation + Delta-G solvation = -70.964528 kcal Electronic energy + Delta-G solvation = -18960.858147 eV Core-core repulsion = 16195.248158 eV Total energy + Delta-G solvation = -2765.609990 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.92001 -38.07892 -36.46255 -34.85208 -32.48593 -31.46111 -29.54776 -29.22980 -27.44333 -25.18363 -25.01215 -22.58460 -21.21616 -20.25620 -18.36459 -17.85793 -17.21713 -16.75888 -16.46974 -16.01732 -15.52828 -15.18458 -15.07068 -14.81725 -14.52179 -13.96543 -13.85042 -13.70939 -13.55506 -13.09896 -12.97734 -12.70690 -12.57282 -12.44380 -12.38411 -12.03448 -11.94525 -11.81785 -11.30865 -11.09872 -11.03839 -10.48243 -10.44617 -9.55034 -8.90525 -8.09348 -6.14238 1.41021 1.41917 1.53256 2.47140 2.80176 3.05393 3.26559 3.65948 3.87299 4.09153 4.12178 4.21946 4.28452 4.38429 4.41101 4.44167 4.53984 4.56338 4.61259 4.77170 4.83466 4.93736 4.96820 4.99546 5.09218 5.14275 5.22672 5.29048 5.34444 5.49049 5.68971 5.89291 6.17792 6.29428 6.31648 6.42294 6.50229 6.70874 6.98701 7.51046 9.02708 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021739 B = 0.007461 C = 0.006876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.671636 B = 3751.713090 C = 4071.180738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.100 3.900 3 H 0.082 0.918 4 N -0.842 5.842 5 C 0.106 3.894 6 H 0.048 0.952 7 C 0.045 3.955 8 N -0.533 5.533 9 C 0.095 3.905 10 H 0.066 0.934 11 C -0.171 4.171 12 C 0.037 3.963 13 C -0.498 4.498 14 H 0.056 0.944 15 C -0.005 4.005 16 N -0.939 5.939 17 Si 0.956 3.044 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.268 1.268 21 C 0.017 3.983 22 C 0.068 3.932 23 O -0.383 6.383 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.055 0.945 27 H 0.348 0.652 28 H 0.349 0.651 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.057 0.943 33 H 0.063 0.937 34 H -0.011 1.011 35 H -0.004 1.004 36 H 0.258 0.742 37 H 0.041 0.959 38 H 0.084 0.916 39 H 0.047 0.953 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.030 -9.739 -7.789 16.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.013 4.013 3 H 0.100 0.900 4 N -0.374 5.374 5 C 0.048 3.952 6 H 0.066 0.934 7 C -0.083 4.083 8 N -0.257 5.257 9 C -0.014 4.014 10 H 0.084 0.916 11 C -0.229 4.229 12 C 0.000 4.000 13 C -0.536 4.536 14 H 0.074 0.926 15 C -0.201 4.201 16 N -0.581 5.581 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.192 1.192 21 C -0.111 4.111 22 C -0.008 4.008 23 O -0.302 6.302 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.161 0.839 28 H 0.163 0.837 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.008 0.992 35 H 0.014 0.986 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.548 -9.240 -7.228 15.776 hybrid contribution -0.320 0.357 0.282 0.557 sum -10.868 -8.882 -6.946 15.661 Atomic orbital electron populations 1.22439 0.95583 1.02526 1.02511 1.21357 0.93736 0.97117 0.89068 0.89951 1.58782 1.67431 1.07419 1.03726 1.22125 0.92215 0.83381 0.97488 0.93434 1.22464 0.95400 0.98348 0.92071 1.62251 1.09651 1.12472 1.41365 1.21624 0.86268 0.97990 0.95469 0.91591 1.22345 1.01346 1.00854 0.98402 1.19023 0.93720 0.91551 0.95693 1.21436 1.34083 0.96619 1.01467 0.92596 1.25842 0.96071 0.96897 1.01243 1.70099 1.44106 1.05070 1.38861 0.85585 0.78851 0.77055 0.80347 1.20089 1.21233 1.19219 1.22833 0.96879 0.90030 1.01405 1.22731 0.92224 0.96920 0.88961 1.87812 1.72783 1.22751 1.46843 0.91169 0.92041 0.92563 0.83881 0.83696 0.93206 0.92689 0.93254 0.92387 0.91831 0.99237 0.98585 0.93296 0.94057 0.89751 0.93417 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.59 9.34 71.98 0.67 -2.92 16 2 C 0.10 2.57 3.25 44.92 0.15 2.72 16 3 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 4 N -0.84 -19.42 8.44 -168.67 -1.42 -20.84 16 5 C 0.11 3.37 2.62 30.63 0.08 3.45 16 6 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 7 C 0.05 1.70 3.92 86.32 0.34 2.03 16 8 N -0.53 -20.70 4.34 -869.97 -3.78 -24.47 16 9 C 0.09 3.98 2.26 44.91 0.10 4.08 16 10 H 0.07 2.76 8.00 -2.39 -0.02 2.74 16 11 C -0.17 -6.06 8.39 71.98 0.60 -5.45 16 12 C 0.04 1.99 4.39 29.85 0.13 2.12 16 13 C -0.50 -28.66 8.80 25.60 0.23 -28.44 16 14 H 0.06 3.18 7.75 -2.91 -0.02 3.16 16 15 C 0.00 -0.27 5.46 84.66 0.46 0.19 16 16 N -0.94 -58.26 13.29 21.45 0.28 -57.97 16 17 Si 0.96 45.84 29.54 68.60 2.03 47.86 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 21 C 0.02 0.50 5.41 86.31 0.47 0.97 16 22 C 0.07 1.80 7.01 72.01 0.50 2.30 16 23 O -0.38 -10.89 9.14 -148.98 -1.36 -12.25 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.30 7.69 -2.39 -0.02 1.28 16 26 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.35 7.76 8.37 -89.69 -0.75 7.01 16 28 H 0.35 6.37 9.04 -89.70 -0.81 5.56 16 29 H 0.05 2.24 6.40 -2.38 -0.02 2.23 16 30 H 0.06 2.01 5.73 -2.39 -0.01 2.00 16 31 H 0.05 1.82 6.37 -2.39 -0.02 1.80 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.06 1.94 6.82 -2.39 -0.02 1.92 16 34 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 35 H 0.00 -0.24 6.44 -2.38 -0.02 -0.26 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.04 1.19 6.81 -2.39 -0.02 1.18 16 38 H 0.08 2.40 8.07 -2.38 -0.02 2.38 16 39 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -65.38 307.83 -1.06 -66.43 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -0.54 Total: 20.19 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: 3.73 Total: -18.94 kcal Atomic # 7 Polarization: -98.37 SS G_CDS: -4.92 Total: -103.29 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: -1.36 Total: -12.25 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.86 kcal Total: -65.38 -1.06 -66.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837957.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.530 kcal (2) G-P(sol) polarization free energy of solvation -65.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds