Wall clock time and date at job start Mon Mar 30 2020 04:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46800 * 2 1 4 4 C 1.52995 * 109.47341 * 240.00480 * 2 1 3 5 5 C 1.50701 * 109.47369 * 62.93245 * 4 2 1 6 6 H 1.07997 * 120.00255 * 5.57415 * 5 4 2 7 7 C 1.37880 * 119.99845 * 185.57430 * 5 4 2 8 8 N 1.31510 * 119.99987 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99853 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47025 * 90.00074 * 9 7 5 11 11 H 1.48497 * 109.47303 * 210.00383 * 9 7 5 12 12 H 1.48507 * 109.47053 * 330.00199 * 9 7 5 13 13 N 1.46896 * 109.47056 * 119.99608 * 2 1 3 14 14 C 1.47014 * 110.99783 * 176.55710 * 13 2 1 15 15 C 1.53101 * 109.25929 * 182.39384 * 14 13 2 16 16 O 1.43015 * 109.25897 * 303.16008 * 15 14 13 17 17 C 1.43011 * 113.74264 * 58.66734 * 16 15 14 18 18 H 1.08992 * 109.50891 * 61.26239 * 17 16 15 19 19 C 1.52997 * 109.50759 * 181.40077 * 17 16 15 20 20 H 1.08998 * 109.47778 * 59.99350 * 19 17 16 21 21 C 1.53002 * 109.46884 * 299.99435 * 19 17 16 22 22 N 1.46904 * 109.47169 * 179.97438 * 19 17 16 23 23 C 1.47008 * 111.00673 * 300.19766 * 13 2 1 24 24 H 1.09000 * 109.47185 * 300.00160 * 1 2 3 25 25 H 1.09004 * 109.47447 * 59.99753 * 1 2 3 26 26 H 1.09000 * 109.46800 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47240 * 182.93570 * 4 2 1 28 28 H 1.09002 * 109.46951 * 302.93218 * 4 2 1 29 29 H 0.97000 * 119.99992 * 179.97438 * 8 7 5 30 30 H 1.09000 * 109.50638 * 62.46623 * 14 13 2 31 31 H 1.08999 * 109.50940 * 302.33390 * 14 13 2 32 32 H 1.08996 * 109.50927 * 183.21823 * 15 14 13 33 33 H 1.09011 * 109.50346 * 63.09004 * 15 14 13 34 34 H 1.08999 * 109.47090 * 60.00205 * 21 19 17 35 35 H 1.08996 * 109.47351 * 180.02562 * 21 19 17 36 36 H 1.09002 * 109.47298 * 300.00672 * 21 19 17 37 37 H 1.00897 * 110.99567 * 296.04051 * 22 19 17 38 38 H 1.00900 * 110.99939 * 59.99534 * 22 19 17 39 39 H 1.09003 * 109.50678 * 57.66881 * 23 13 2 40 40 H 1.09003 * 109.54250 * 297.56881 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5980 0.0301 -2.4786 6 1 1.0902 0.9780 -2.3788 7 6 1.8419 -0.4928 -3.7309 8 7 2.4599 -1.6473 -3.8524 9 14 1.2946 0.4386 -5.2548 10 1 2.3819 1.3489 -5.6956 11 1 0.9861 -0.5262 -6.3406 12 1 0.0806 1.2338 -4.9395 13 7 2.0197 -0.6924 1.1995 14 6 3.4869 -0.7838 1.1929 15 6 3.9499 -1.5626 2.4270 16 8 3.4526 -0.9203 3.6041 17 6 2.0269 -0.8150 3.6438 18 1 1.5877 -1.8124 3.6312 19 6 1.6039 -0.0855 4.9204 20 1 2.0421 0.9124 4.9310 21 6 2.0910 -0.8693 6.1408 22 7 0.1394 0.0228 4.9601 23 6 1.5445 -0.0286 2.4220 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1287 -0.7669 -1.2233 28 1 1.6344 -1.7325 -1.2760 29 1 2.6311 -2.0154 -4.7334 30 1 3.9142 0.2188 1.2139 31 1 3.8154 -1.3012 0.2915 32 1 5.0393 -1.5837 2.4566 33 1 3.5666 -2.5820 2.3790 34 1 3.1777 -0.9493 6.1112 35 1 1.7893 -0.3499 7.0504 36 1 1.6529 -1.8673 6.1303 37 1 -0.2018 0.5911 4.1995 38 1 -0.2911 -0.8897 4.9511 39 1 0.4550 0.0053 2.4179 40 1 1.9399 0.9864 2.4630 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695837960.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:29 Heat of formation + Delta-G solvation = -52.125635 kcal Electronic energy + Delta-G solvation = -18518.573208 eV Core-core repulsion = 15753.780134 eV Total energy + Delta-G solvation = -2764.793074 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.75950 -36.69229 -35.65811 -33.08619 -31.07146 -30.35879 -29.02243 -27.10041 -26.19542 -24.17358 -22.70681 -21.25186 -20.38407 -19.12527 -16.84660 -16.53940 -16.00890 -15.67093 -14.94763 -14.68942 -14.58335 -14.18293 -13.80405 -13.61476 -13.22245 -13.05985 -12.25771 -12.01819 -11.78703 -11.68710 -11.49623 -11.30800 -11.24951 -10.97686 -10.91260 -10.83121 -10.44748 -10.26196 -9.91824 -9.51470 -9.22043 -9.14385 -8.88524 -8.38300 -7.85218 -6.04677 -4.06599 3.28447 3.35170 3.37755 3.78799 4.15514 4.43359 4.54050 4.76400 5.02531 5.12500 5.28364 5.31154 5.39911 5.41187 5.52334 5.60604 5.69619 5.81918 5.89600 5.90400 6.01994 6.06634 6.16759 6.21649 6.25527 6.29168 6.60195 6.82086 6.91672 7.03817 7.25219 7.29898 7.40991 7.48227 7.69608 7.79425 7.99926 8.37522 8.99194 9.56878 11.06704 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.043619 B = 0.005209 C = 0.004793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.761920 B = 5374.206817 C = 5839.919797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.085 3.915 3 H 0.026 0.974 4 C 0.031 3.969 5 C -0.518 4.518 6 H 0.055 0.945 7 C 0.059 3.941 8 N -0.893 5.893 9 Si 0.891 3.109 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.531 5.531 14 C 0.016 3.984 15 C 0.065 3.935 16 O -0.382 6.382 17 C 0.063 3.937 18 H 0.061 0.939 19 C 0.095 3.905 20 H 0.085 0.915 21 C -0.138 4.138 22 N -0.835 5.835 23 C 0.019 3.981 24 H 0.030 0.970 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.014 0.986 28 H 0.029 0.971 29 H 0.261 0.739 30 H 0.035 0.965 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.343 0.657 38 H 0.341 0.659 39 H 0.080 0.920 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.927 1.081 15.128 15.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.022 4.022 3 H 0.044 0.956 4 C -0.006 4.006 5 C -0.557 4.557 6 H 0.073 0.927 7 C -0.142 4.142 8 N -0.532 5.532 9 Si 0.719 3.281 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.199 1.199 13 N -0.257 5.257 14 C -0.112 4.112 15 C -0.012 4.012 16 O -0.300 6.300 17 C 0.002 3.998 18 H 0.079 0.921 19 C -0.017 4.017 20 H 0.103 0.897 21 C -0.195 4.195 22 N -0.366 5.366 23 C -0.110 4.110 24 H 0.048 0.952 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.118 0.882 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.157 0.843 38 H 0.153 0.847 39 H 0.099 0.901 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.824 0.904 15.841 15.888 hybrid contribution -0.035 0.697 -2.278 2.382 sum -0.860 1.602 13.563 13.685 Atomic orbital electron populations 1.21751 0.95169 1.01609 1.00125 1.21875 0.95120 0.95240 0.89984 0.95551 1.19190 0.95906 0.96344 0.89164 1.21163 1.37866 1.05840 0.90831 0.92690 1.24980 0.95254 0.94938 0.99056 1.69961 1.41738 1.18031 1.23505 0.86613 0.79023 0.79634 0.82852 1.20713 1.21187 1.19878 1.62330 1.09016 1.52427 1.01886 1.22818 0.88830 0.99831 0.99746 1.22702 0.98720 0.95791 0.83973 1.87899 1.20278 1.80456 1.41405 1.23133 0.82397 0.98939 0.95316 0.92112 1.21393 0.88040 0.99691 0.92581 0.89687 1.21711 1.01552 0.99408 0.96859 1.59143 1.04659 1.20102 1.52674 1.22800 1.00802 0.96169 0.91244 0.95151 0.91257 0.92654 0.96768 0.95281 0.92971 0.94651 0.88195 0.88763 0.92557 0.91413 0.92152 0.93044 0.84335 0.84662 0.90139 0.94707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.75 37.16 0.32 -2.11 16 2 C 0.08 1.76 2.11 -67.72 -0.14 1.61 16 3 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 4 C 0.03 0.79 4.23 -27.89 -0.12 0.67 16 5 C -0.52 -14.25 8.28 -34.44 -0.29 -14.54 16 6 H 0.05 1.47 7.13 -52.49 -0.37 1.10 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 9 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 13 N -0.53 -9.62 4.59 -226.34 -1.04 -10.66 16 14 C 0.02 0.28 5.26 -3.71 -0.02 0.26 16 15 C 0.07 0.95 7.01 37.21 0.26 1.21 16 16 O -0.38 -5.64 9.80 -35.23 -0.35 -5.99 16 17 C 0.06 0.84 2.54 -26.68 -0.07 0.77 16 18 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 19 C 0.10 1.08 3.21 -67.71 -0.22 0.86 16 20 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 21 C -0.14 -1.42 9.34 37.16 0.35 -1.07 16 22 N -0.84 -8.37 9.13 -4.67 -0.04 -8.42 16 23 C 0.02 0.28 4.19 -3.71 -0.02 0.26 16 24 H 0.03 0.48 6.35 -51.93 -0.33 0.15 16 25 H 0.07 1.39 6.93 -51.93 -0.36 1.03 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.01 0.38 6.13 -51.93 -0.32 0.06 16 28 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.10 1.90 6.05 -51.93 -0.31 1.58 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.07 0.73 7.68 -51.93 -0.40 0.33 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.34 3.32 7.48 -39.29 -0.29 3.03 16 38 H 0.34 3.09 9.00 -39.29 -0.35 2.73 16 39 H 0.08 1.11 4.99 -51.93 -0.26 0.85 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 307.66 15.07 4.64 4.64 Total: -1.00 -29.35 307.66 -7.89 -37.24 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -6.79 Total: 3.02 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: -0.03 Total: -10.52 kcal Atomic # 7 Polarization: -44.38 SS G_CDS: -0.35 Total: -44.73 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.35 Total: -5.99 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -29.35 -7.89 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837960.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.882 kcal (2) G-P(sol) polarization free energy of solvation -29.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds