Wall clock time and date at job start Mon Mar 30 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47230 * 2 1 4 4 C 1.53000 * 109.47397 * 240.00367 * 2 1 3 5 5 C 1.50695 * 109.47304 * 174.99947 * 4 2 1 6 6 H 1.08001 * 120.00237 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00189 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99819 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47098 * 90.00169 * 9 7 5 11 11 H 1.48506 * 109.47121 * 210.00262 * 9 7 5 12 12 H 1.48505 * 109.47225 * 329.99752 * 9 7 5 13 13 N 1.46896 * 109.47430 * 120.00132 * 2 1 3 14 14 C 1.47024 * 110.99604 * 58.63634 * 13 2 1 15 15 C 1.53100 * 109.25427 * 177.61018 * 14 13 2 16 16 O 1.43014 * 109.26048 * 56.85033 * 15 14 13 17 17 C 1.43014 * 113.73678 * 301.32483 * 16 15 14 18 18 H 1.09001 * 109.50849 * 298.73885 * 17 16 15 19 19 C 1.53004 * 109.50623 * 178.60553 * 17 16 15 20 20 H 1.09006 * 109.46866 * 180.21674 * 19 17 16 21 21 C 1.52998 * 109.47014 * 60.22237 * 19 17 16 22 22 N 1.46897 * 109.46908 * 300.21711 * 19 17 16 23 23 C 1.47016 * 111.00332 * 295.00592 * 13 2 1 24 24 H 1.09000 * 109.47136 * 299.99830 * 1 2 3 25 25 H 1.09003 * 109.47288 * 59.99976 * 1 2 3 26 26 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47155 * 295.00205 * 4 2 1 28 28 H 1.08999 * 109.47092 * 54.99519 * 4 2 1 29 29 H 0.97004 * 120.00321 * 179.97438 * 8 7 5 30 30 H 1.08993 * 109.50322 * 57.67582 * 14 13 2 31 31 H 1.09000 * 109.50281 * 297.54177 * 14 13 2 32 32 H 1.09000 * 109.50921 * 296.90945 * 15 14 13 33 33 H 1.09001 * 109.50521 * 176.78202 * 15 14 13 34 34 H 1.09002 * 109.47142 * 180.02562 * 21 19 17 35 35 H 1.09006 * 109.46845 * 299.99450 * 21 19 17 36 36 H 1.08992 * 109.47534 * 59.99744 * 21 19 17 37 37 H 1.00896 * 110.99988 * 56.05558 * 22 19 17 38 38 H 1.00908 * 110.99414 * 179.97438 * 22 19 17 39 39 H 1.08999 * 109.50851 * 62.44637 * 23 13 2 40 40 H 1.09004 * 109.50278 * 302.32401 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1925 -2.3584 8 7 5.5409 -1.0992 -2.4141 9 14 3.3014 -2.1075 -3.6960 10 1 2.9397 -1.1623 -4.7827 11 1 4.1603 -3.1876 -4.2449 12 1 2.0659 -2.7003 -3.1238 13 7 2.0197 -0.6925 1.1994 14 6 1.5218 -2.0749 1.2497 15 6 2.1027 -2.7763 2.4804 16 8 1.7581 -2.0337 3.6530 17 6 2.2280 -0.6831 3.6379 18 1 3.3165 -0.6770 3.5810 19 6 1.7782 0.0287 4.9154 20 1 2.1334 1.0592 4.9015 21 6 2.3579 -0.6940 6.1330 22 7 0.3113 0.0173 4.9917 23 6 1.6484 0.0396 2.4190 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7714 -1.2057 28 1 1.6054 -0.2616 -2.1370 29 1 6.0254 -1.5059 -3.1495 30 1 1.8299 -2.6057 0.3489 31 1 0.4337 -2.0677 1.3146 32 1 3.1875 -2.8311 2.3899 33 1 1.6916 -3.7832 2.5534 34 1 2.0371 -0.1873 7.0431 35 1 2.0028 -1.7245 6.1469 36 1 3.4464 -0.6856 6.0764 37 1 -0.0461 -0.9249 4.9412 38 1 -0.0109 0.4816 5.8277 39 1 0.5624 0.0806 2.5025 40 1 2.0489 1.0523 2.3718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695837961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:32 Heat of formation + Delta-G solvation = -44.270864 kcal Electronic energy + Delta-G solvation = -18855.850548 eV Core-core repulsion = 16091.398082 eV Total energy + Delta-G solvation = -2764.452465 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.64358 -36.82708 -35.33015 -32.71741 -30.96899 -30.33086 -28.69422 -27.82650 -26.17729 -23.77717 -22.83579 -21.35942 -19.96283 -18.70172 -16.61041 -16.55839 -16.09246 -15.48592 -14.89807 -14.35882 -14.15899 -14.06331 -13.90993 -13.36344 -13.05767 -12.86457 -12.67597 -12.35987 -12.13803 -11.76872 -11.48865 -11.42322 -11.25690 -10.92698 -10.72355 -10.53977 -10.34983 -10.03990 -9.62377 -9.55078 -9.21624 -8.98824 -8.69676 -8.43270 -7.48006 -5.91633 -3.85864 3.34684 3.42670 3.44730 3.97787 4.39077 4.53381 4.56258 4.93686 5.11193 5.30735 5.40980 5.44355 5.53930 5.56749 5.64659 5.68850 5.74333 5.80321 5.91171 5.94603 5.95904 6.01187 6.13896 6.28763 6.34084 6.43615 6.55307 6.59404 6.81352 7.10430 7.12003 7.35168 7.44581 7.46649 7.78820 7.82547 7.95685 8.71790 9.21179 9.71333 11.22339 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034562 B = 0.006297 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.934058 B = 4445.413844 C = 4664.078148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.097 3.903 3 H 0.075 0.925 4 C -0.009 4.009 5 C -0.491 4.491 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.907 5.907 9 Si 0.872 3.128 10 H -0.280 1.280 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.510 5.510 14 C 0.019 3.981 15 C 0.067 3.933 16 O -0.389 6.389 17 C 0.101 3.899 18 H 0.067 0.933 19 C 0.097 3.903 20 H 0.089 0.911 21 C -0.182 4.182 22 N -0.839 5.839 23 C 0.029 3.971 24 H 0.048 0.952 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.017 0.983 28 H 0.014 0.986 29 H 0.260 0.740 30 H 0.093 0.907 31 H 0.033 0.967 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.347 0.653 38 H 0.335 0.665 39 H 0.053 0.947 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.763 -0.146 13.806 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.011 4.011 3 H 0.093 0.907 4 C -0.046 4.046 5 C -0.530 4.530 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.700 3.300 10 H -0.206 1.206 11 H -0.216 1.216 12 H -0.194 1.194 13 N -0.234 5.234 14 C -0.109 4.109 15 C -0.010 4.010 16 O -0.308 6.308 17 C 0.043 3.957 18 H 0.085 0.915 19 C -0.015 4.015 20 H 0.107 0.893 21 C -0.242 4.242 22 N -0.368 5.368 23 C -0.099 4.099 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.035 0.965 28 H 0.032 0.968 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.078 0.922 33 H 0.107 0.893 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.160 0.840 38 H 0.147 0.853 39 H 0.071 0.929 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.166 0.132 13.131 16.014 hybrid contribution -0.909 -0.961 -0.188 1.336 sum -10.075 -0.829 12.943 16.423 Atomic orbital electron populations 1.22544 0.99607 1.01310 1.01127 1.21664 0.90001 0.98488 0.90931 0.90652 1.19717 0.97968 0.95298 0.91620 1.21059 0.89396 1.33867 1.08636 0.90341 1.25014 0.94667 0.96304 0.97790 1.69910 1.06427 1.46160 1.32278 0.86907 0.80161 0.80066 0.82818 1.20555 1.21612 1.19363 1.62314 1.58760 1.01079 1.01221 1.22753 0.97035 0.91574 0.99569 1.22643 1.00142 0.94156 0.84025 1.87794 1.78930 1.23373 1.40677 1.22171 0.97778 0.82095 0.93675 0.91542 1.21459 0.88348 0.98832 0.92890 0.89275 1.22544 1.02048 1.01618 0.97960 1.58887 1.08297 1.24399 1.45249 1.22639 0.99612 0.97696 0.89982 0.93323 0.92629 0.93042 0.96498 0.96821 0.93065 0.88838 0.94856 0.92182 0.89291 0.93118 0.91861 0.92138 0.83957 0.85324 0.92880 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.16 8.49 37.15 0.32 -2.84 16 2 C 0.10 1.95 2.30 -67.72 -0.16 1.80 16 3 H 0.08 1.57 8.12 -51.93 -0.42 1.15 16 4 C -0.01 -0.21 3.34 -27.89 -0.09 -0.30 16 5 C -0.49 -13.91 9.39 -34.44 -0.32 -14.23 16 6 H 0.08 2.44 7.99 -52.49 -0.42 2.02 16 7 C 0.06 1.81 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.25 13.96 55.43 0.77 -27.48 16 9 Si 0.87 21.85 27.47 -169.99 -4.67 17.18 16 10 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 13 N -0.51 -9.76 4.43 -226.33 -1.00 -10.76 16 14 C 0.02 0.33 4.87 -3.70 -0.02 0.32 16 15 C 0.07 1.04 7.01 37.21 0.26 1.31 16 16 O -0.39 -5.85 9.14 -35.23 -0.32 -6.17 16 17 C 0.10 1.47 2.62 -26.68 -0.07 1.40 16 18 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 19 C 0.10 1.11 3.25 -67.71 -0.22 0.89 16 20 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 21 C -0.18 -1.86 9.34 37.16 0.35 -1.51 16 22 N -0.84 -9.03 8.44 -4.67 -0.04 -9.07 16 23 C 0.03 0.47 4.48 -3.71 -0.02 0.46 16 24 H 0.05 0.76 6.58 -51.93 -0.34 0.42 16 25 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 26 H 0.05 0.86 6.44 -51.93 -0.33 0.52 16 27 H 0.02 0.40 5.19 -51.93 -0.27 0.13 16 28 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.09 1.83 6.12 -51.93 -0.32 1.51 16 31 H 0.03 0.57 6.42 -51.93 -0.33 0.23 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.70 7.69 -51.93 -0.40 0.30 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.35 3.90 8.37 -39.29 -0.33 3.57 16 38 H 0.33 2.86 9.04 -39.29 -0.36 2.51 16 39 H 0.05 0.87 5.93 -51.93 -0.31 0.56 16 40 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 LS Contribution 303.61 15.07 4.58 4.58 Total: -1.00 -30.53 303.61 -7.53 -38.06 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.77 Total: 4.67 kcal Atomic # 6 Polarization: -10.93 SS G_CDS: -0.07 Total: -11.00 kcal Atomic # 7 Polarization: -47.04 SS G_CDS: -0.27 Total: -47.31 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.32 Total: -6.17 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.53 -7.53 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.216 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds