Wall clock time and date at job start Mon Mar 30 2020 04:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47230 * 2 1 4 4 C 1.53000 * 109.47397 * 240.00367 * 2 1 3 5 5 C 1.50695 * 109.47304 * 174.99947 * 4 2 1 6 6 H 1.08001 * 120.00237 * 359.97438 * 5 4 2 7 7 C 1.37883 * 120.00080 * 180.02562 * 5 4 2 8 8 N 1.31507 * 120.00189 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99819 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47098 * 90.00169 * 9 7 5 11 11 H 1.48506 * 109.47121 * 210.00262 * 9 7 5 12 12 H 1.48505 * 109.47225 * 329.99752 * 9 7 5 13 13 N 1.46896 * 109.47430 * 120.00132 * 2 1 3 14 14 C 1.47024 * 110.99604 * 58.63634 * 13 2 1 15 15 C 1.53100 * 109.25427 * 177.61018 * 14 13 2 16 16 O 1.43014 * 109.26048 * 56.85033 * 15 14 13 17 17 C 1.43014 * 113.73678 * 301.32483 * 16 15 14 18 18 H 1.09001 * 109.50849 * 298.73885 * 17 16 15 19 19 C 1.53004 * 109.50623 * 178.60553 * 17 16 15 20 20 H 1.09006 * 109.46866 * 180.21674 * 19 17 16 21 21 C 1.52998 * 109.47014 * 60.22237 * 19 17 16 22 22 N 1.46897 * 109.46908 * 300.21711 * 19 17 16 23 23 C 1.47016 * 111.00332 * 295.00592 * 13 2 1 24 24 H 1.09000 * 109.47136 * 299.99830 * 1 2 3 25 25 H 1.09003 * 109.47288 * 59.99976 * 1 2 3 26 26 H 1.09001 * 109.47172 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47155 * 295.00205 * 4 2 1 28 28 H 1.08999 * 109.47092 * 54.99519 * 4 2 1 29 29 H 0.97004 * 120.00321 * 179.97438 * 8 7 5 30 30 H 1.08993 * 109.50322 * 57.67582 * 14 13 2 31 31 H 1.09000 * 109.50281 * 297.54177 * 14 13 2 32 32 H 1.09000 * 109.50921 * 296.90945 * 15 14 13 33 33 H 1.09001 * 109.50521 * 176.78202 * 15 14 13 34 34 H 1.09002 * 109.47142 * 180.02562 * 21 19 17 35 35 H 1.09006 * 109.46845 * 299.99450 * 21 19 17 36 36 H 1.08992 * 109.47534 * 59.99744 * 21 19 17 37 37 H 1.00896 * 110.99988 * 56.05558 * 22 19 17 38 38 H 1.00908 * 110.99414 * 179.97438 * 22 19 17 39 39 H 1.08999 * 109.50851 * 62.44637 * 23 13 2 40 40 H 1.09004 * 109.50278 * 302.32401 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5419 -0.6148 -1.3127 6 1 4.0789 -0.0854 -0.5396 7 6 4.2304 -1.1925 -2.3584 8 7 5.5409 -1.0992 -2.4141 9 14 3.3014 -2.1075 -3.6960 10 1 2.9397 -1.1623 -4.7827 11 1 4.1603 -3.1876 -4.2449 12 1 2.0659 -2.7003 -3.1238 13 7 2.0197 -0.6925 1.1994 14 6 1.5218 -2.0749 1.2497 15 6 2.1027 -2.7763 2.4804 16 8 1.7581 -2.0337 3.6530 17 6 2.2280 -0.6831 3.6379 18 1 3.3165 -0.6770 3.5810 19 6 1.7782 0.0287 4.9154 20 1 2.1334 1.0592 4.9015 21 6 2.3579 -0.6940 6.1330 22 7 0.3113 0.0173 4.9917 23 6 1.6484 0.0396 2.4190 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.7517 -1.7714 -1.2057 28 1 1.6054 -0.2616 -2.1370 29 1 6.0254 -1.5059 -3.1495 30 1 1.8299 -2.6057 0.3489 31 1 0.4337 -2.0677 1.3146 32 1 3.1875 -2.8311 2.3899 33 1 1.6916 -3.7832 2.5534 34 1 2.0371 -0.1873 7.0431 35 1 2.0028 -1.7245 6.1469 36 1 3.4464 -0.6856 6.0764 37 1 -0.0461 -0.9249 4.9412 38 1 -0.0109 0.4816 5.8277 39 1 0.5624 0.0806 2.5025 40 1 2.0489 1.0523 2.3718 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695837961.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:32 Heat of formation + Delta-G solvation = -67.799841 kcal Electronic energy + Delta-G solvation = -18856.870841 eV Core-core repulsion = 16091.398082 eV Total energy + Delta-G solvation = -2765.472758 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.94676 -38.19019 -36.40405 -34.80727 -32.66040 -31.55291 -29.77677 -29.44584 -27.47416 -25.17893 -24.55806 -22.74305 -21.15988 -20.23019 -18.77948 -17.68415 -17.39339 -16.71920 -16.37817 -16.06368 -15.68289 -15.27600 -15.02618 -14.72770 -14.56684 -14.13620 -13.97585 -13.89567 -13.56335 -13.31228 -12.94940 -12.70939 -12.59720 -12.40168 -12.18095 -12.00137 -11.86447 -11.63518 -11.37474 -11.32073 -11.05861 -10.68021 -10.48266 -9.55532 -8.91084 -8.17884 -6.17238 1.37116 1.38455 1.49372 2.41496 2.78568 3.01880 3.20387 3.66058 3.84665 4.08398 4.12039 4.15539 4.27097 4.37381 4.39120 4.43087 4.51290 4.53288 4.63561 4.71547 4.81324 4.92376 4.96807 4.98414 5.05391 5.08755 5.10355 5.23917 5.28862 5.34891 5.55215 5.74256 6.16087 6.29337 6.32689 6.38756 6.51395 6.69861 6.90701 7.43504 8.99565 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034562 B = 0.006297 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.934058 B = 4445.413844 C = 4664.078148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 H 0.059 0.941 4 C -0.005 4.005 5 C -0.491 4.491 6 H 0.033 0.967 7 C -0.001 4.001 8 N -0.958 5.958 9 Si 0.944 3.056 10 H -0.270 1.270 11 H -0.289 1.289 12 H -0.248 1.248 13 N -0.538 5.538 14 C 0.022 3.978 15 C 0.070 3.930 16 O -0.382 6.382 17 C 0.101 3.899 18 H 0.048 0.952 19 C 0.103 3.897 20 H 0.096 0.904 21 C -0.175 4.175 22 N -0.842 5.842 23 C 0.037 3.963 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.022 0.978 28 H 0.019 0.981 29 H 0.261 0.739 30 H 0.071 0.929 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.118 0.882 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.346 0.654 38 H 0.350 0.650 39 H 0.059 0.941 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 -0.692 14.423 18.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.010 4.010 3 H 0.077 0.923 4 C -0.042 4.042 5 C -0.529 4.529 6 H 0.051 0.949 7 C -0.196 4.196 8 N -0.600 5.600 9 Si 0.768 3.232 10 H -0.195 1.195 11 H -0.215 1.215 12 H -0.172 1.172 13 N -0.262 5.262 14 C -0.106 4.106 15 C -0.007 4.007 16 O -0.301 6.301 17 C 0.042 3.958 18 H 0.066 0.934 19 C -0.009 4.009 20 H 0.113 0.887 21 C -0.235 4.235 22 N -0.373 5.373 23 C -0.091 4.091 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.038 0.962 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.136 0.864 34 H 0.090 0.910 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.159 0.841 38 H 0.164 0.836 39 H 0.077 0.923 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.675 -0.401 13.776 18.062 hybrid contribution -0.066 -0.726 -0.311 0.792 sum -11.740 -1.126 13.466 17.901 Atomic orbital electron populations 1.22379 0.96513 1.02002 1.02347 1.21481 0.92361 0.97082 0.90043 0.92298 1.19650 0.94674 0.96079 0.93803 1.21261 0.91898 1.32625 1.07142 0.94882 1.25937 0.95482 0.97538 1.00678 1.70081 1.08490 1.47901 1.33534 0.85760 0.79279 0.78691 0.79447 1.19535 1.21520 1.17188 1.62231 1.59961 1.02116 1.01936 1.22718 0.97776 0.90618 0.99503 1.22649 0.99063 0.95422 0.83516 1.87813 1.78662 1.23468 1.40174 1.22228 0.96747 0.82110 0.94676 0.93437 1.21374 0.89089 0.98787 0.91651 0.88654 1.22470 1.01680 1.01166 0.98146 1.58844 1.07542 1.24488 1.46377 1.22617 0.99858 0.97306 0.89355 0.91918 0.91621 0.92509 0.96028 0.96242 0.93024 0.91076 0.93519 0.94138 0.86365 0.91020 0.92645 0.92568 0.84088 0.83650 0.92293 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.45 8.49 71.98 0.61 -4.84 16 2 C 0.10 3.92 2.30 44.91 0.10 4.02 16 3 H 0.06 2.49 8.12 -2.39 -0.02 2.47 16 4 C 0.00 -0.22 3.34 29.85 0.10 -0.12 16 5 C -0.49 -28.52 9.39 25.60 0.24 -28.28 16 6 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 7 C 0.00 -0.08 5.47 84.66 0.46 0.38 16 8 N -0.96 -61.42 13.96 21.45 0.30 -61.12 16 9 Si 0.94 44.98 27.47 68.60 1.88 46.86 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 12 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 13 N -0.54 -20.58 4.43 -869.97 -3.86 -24.44 16 14 C 0.02 0.75 4.87 86.31 0.42 1.17 16 15 C 0.07 2.12 7.01 72.02 0.50 2.63 16 16 O -0.38 -10.96 9.14 -148.98 -1.36 -12.32 16 17 C 0.10 2.87 2.62 30.63 0.08 2.95 16 18 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 19 C 0.10 2.19 3.25 44.92 0.15 2.34 16 20 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 21 C -0.18 -3.23 9.34 71.98 0.67 -2.56 16 22 N -0.84 -16.03 8.44 -168.68 -1.42 -17.46 16 23 C 0.04 1.17 4.48 86.31 0.39 1.55 16 24 H 0.06 1.80 6.58 -2.39 -0.02 1.78 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H 0.06 1.72 6.44 -2.39 -0.02 1.71 16 27 H 0.02 1.00 5.19 -2.39 -0.01 0.99 16 28 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 29 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 30 H 0.07 2.75 6.12 -2.39 -0.01 2.73 16 31 H 0.05 1.48 6.42 -2.39 -0.02 1.46 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.12 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 1.12 7.69 -2.38 -0.02 1.10 16 36 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.35 6.88 8.37 -89.70 -0.75 6.13 16 38 H 0.35 4.98 9.04 -89.69 -0.81 4.17 16 39 H 0.06 1.82 5.93 -2.39 -0.01 1.80 16 40 H 0.07 2.18 8.13 -2.38 -0.02 2.16 16 Total: -1.00 -66.78 303.61 -1.32 -68.10 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.59 Total: 21.13 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: 3.73 Total: -20.75 kcal Atomic # 7 Polarization: -98.04 SS G_CDS: -4.98 Total: -103.02 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: -1.36 Total: -12.32 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.86 kcal Total: -66.78 -1.32 -68.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695837961.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.300 kcal (2) G-P(sol) polarization free energy of solvation -66.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds