Wall clock time and date at job start Mon Mar 30 2020 04:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46901 * 110.99870 * 2 1 4 4 C 1.53004 * 109.46916 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.50372 * 305.08568 * 4 3 2 6 6 C 1.53098 * 109.50389 * 184.99845 * 4 3 2 7 7 N 1.47012 * 109.25756 * 183.21352 * 6 4 3 8 8 C 1.46901 * 111.00024 * 182.38952 * 7 6 4 9 9 H 1.08998 * 109.46692 * 55.00888 * 8 7 6 10 10 C 1.52992 * 109.47335 * 294.99998 * 8 7 6 11 11 C 1.53004 * 109.46989 * 174.99984 * 8 7 6 12 12 C 1.50699 * 109.47267 * 295.00444 * 11 8 7 13 13 H 1.08000 * 120.00098 * 359.97438 * 12 11 8 14 14 C 1.37876 * 120.00179 * 179.97438 * 12 11 8 15 15 N 1.31517 * 119.99625 * 0.02562 * 14 12 11 16 16 Si 1.86798 * 120.00295 * 179.97438 * 14 12 11 17 17 H 1.48507 * 109.46668 * 90.00126 * 16 14 12 18 18 H 1.48498 * 109.47473 * 210.00216 * 16 14 12 19 19 H 1.48500 * 109.47139 * 330.00550 * 16 14 12 20 20 C 1.47022 * 110.74982 * 58.61870 * 7 6 4 21 21 C 1.53102 * 109.25573 * 301.38290 * 20 7 6 22 22 O 1.43007 * 109.25771 * 56.84883 * 21 20 7 23 23 H 1.08996 * 109.46906 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46798 * 300.00327 * 1 2 3 25 25 H 1.08998 * 109.46961 * 60.00043 * 1 2 3 26 26 H 1.00901 * 110.99869 * 236.04711 * 2 1 3 27 27 H 1.09004 * 109.47031 * 299.99620 * 3 2 1 28 28 H 1.08995 * 109.47111 * 59.99900 * 3 2 1 29 29 H 1.09003 * 109.50887 * 303.14881 * 6 4 3 30 30 H 1.09000 * 109.50636 * 63.23852 * 6 4 3 31 31 H 1.09003 * 109.47122 * 60.00327 * 10 8 7 32 32 H 1.09004 * 109.47445 * 179.97438 * 10 8 7 33 33 H 1.08997 * 109.47520 * 299.99812 * 10 8 7 34 34 H 1.09006 * 109.46787 * 55.00148 * 11 8 7 35 35 H 1.08996 * 109.47195 * 175.00348 * 11 8 7 36 36 H 0.96997 * 119.99638 * 179.97438 * 15 14 12 37 37 H 1.08997 * 109.51005 * 61.31400 * 20 7 6 38 38 H 1.09001 * 109.50373 * 181.40990 * 20 7 6 39 39 H 1.09003 * 109.50575 * 176.78639 * 21 20 7 40 40 H 1.09001 * 109.50486 * 296.91331 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5250 1.3306 -0.0006 5 1 3.8733 0.7304 0.8399 6 6 4.0744 2.7541 0.1251 7 7 5.5419 2.7161 0.0465 8 6 6.1133 4.0583 0.2199 9 1 5.7537 4.4881 1.1548 10 6 5.6867 4.9491 -0.9485 11 6 7.6398 3.9618 0.2569 12 6 8.0648 3.1867 1.4774 13 1 7.3206 2.8018 2.1588 14 6 9.4037 2.9689 1.7241 15 7 10.3100 3.4381 0.8945 16 14 9.9306 2.0088 3.2374 17 1 10.0120 0.5641 2.9033 18 1 11.2614 2.4882 3.6893 19 1 8.9370 2.2107 4.3224 20 6 5.9802 2.1169 -1.2225 21 6 5.4116 0.6998 -1.3347 22 8 3.9868 0.7532 -1.2248 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8306 -0.5261 -0.7814 27 1 1.6460 1.8948 -0.8901 28 1 1.6460 1.8948 0.8899 29 1 3.6822 3.3685 -0.6854 30 1 3.7714 3.1779 1.0825 31 1 4.5992 5.0179 -0.9748 32 1 6.1103 5.9451 -0.8196 33 1 6.0464 4.5192 -1.8833 34 1 7.9934 3.4513 -0.6390 35 1 8.0664 4.9640 0.2962 36 1 11.2519 3.2852 1.0683 37 1 5.6185 2.7210 -2.0545 38 1 7.0691 2.0759 -1.2487 39 1 5.6866 0.2726 -2.2991 40 1 5.8156 0.0811 -0.5334 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695838048.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:36 Heat of formation + Delta-G solvation = -43.322559 kcal Electronic energy + Delta-G solvation = -18502.337294 eV Core-core repulsion = 15737.925950 eV Total energy + Delta-G solvation = -2764.411344 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.55676 -36.73151 -35.58913 -32.82724 -31.52849 -30.68409 -27.78680 -27.18991 -25.43176 -23.63856 -23.03937 -22.22199 -20.38699 -18.73901 -16.43866 -16.19525 -16.14320 -15.59287 -14.90405 -14.52292 -14.46359 -14.25886 -13.91609 -13.61655 -13.21535 -12.90581 -12.30003 -12.13556 -11.89983 -11.76919 -11.63174 -11.46497 -11.12632 -11.04237 -10.78895 -10.61308 -10.38717 -10.09129 -9.95845 -9.39710 -9.08253 -8.98039 -8.55004 -8.27521 -7.54815 -5.90706 -3.88943 3.39051 3.45044 3.49471 3.95868 4.06959 4.52220 4.56397 5.04318 5.21080 5.26435 5.36162 5.37298 5.45381 5.47894 5.59236 5.60729 5.69544 5.71086 5.79013 5.88453 5.92171 5.94046 6.01912 6.20453 6.32893 6.40936 6.56088 6.67371 6.86425 6.93361 7.29413 7.43585 7.47782 7.62757 7.84331 7.95602 8.10205 8.55277 9.17299 9.73302 11.21160 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.005924 C = 0.005442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.363001 B = 4725.521014 C = 5144.116843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.069 3.931 4 C 0.096 3.904 5 H 0.075 0.925 6 C 0.023 3.977 7 N -0.507 5.507 8 C 0.086 3.914 9 H 0.071 0.929 10 C -0.184 4.184 11 C 0.029 3.971 12 C -0.492 4.492 13 H 0.061 0.939 14 C 0.051 3.949 15 N -0.904 5.904 16 Si 0.890 3.110 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.275 1.275 20 C 0.017 3.983 21 C 0.068 3.932 22 O -0.392 6.392 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.019 0.981 26 H 0.350 0.650 27 H 0.034 0.966 28 H 0.084 0.916 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.040 0.960 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.020 0.980 35 H 0.019 0.981 36 H 0.258 0.742 37 H 0.032 0.968 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.405 -3.475 -4.366 16.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.324 5.324 3 C -0.061 4.061 4 C 0.037 3.963 5 H 0.093 0.907 6 C -0.107 4.107 7 N -0.231 5.231 8 C -0.022 4.022 9 H 0.089 0.911 10 C -0.243 4.243 11 C -0.008 4.008 12 C -0.531 4.531 13 H 0.079 0.921 14 C -0.148 4.148 15 N -0.545 5.545 16 Si 0.719 3.281 17 H -0.209 1.209 18 H -0.216 1.216 19 H -0.200 1.200 20 C -0.111 4.111 21 C -0.009 4.009 22 O -0.312 6.312 23 H 0.085 0.915 24 H 0.082 0.918 25 H 0.038 0.962 26 H 0.168 0.832 27 H 0.053 0.947 28 H 0.102 0.898 29 H 0.052 0.948 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.038 0.962 36 H 0.067 0.933 37 H 0.050 0.950 38 H 0.119 0.881 39 H 0.108 0.892 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.122 -3.900 -3.451 15.994 hybrid contribution 0.139 0.458 -0.608 0.773 sum -14.983 -3.441 -4.059 15.900 Atomic orbital electron populations 1.22185 0.88124 1.01713 1.00189 1.60372 1.07299 1.14092 1.50652 1.21970 0.93083 0.90053 1.00945 1.22151 0.92564 0.93647 0.87918 0.90669 1.22709 0.90561 0.96189 1.01206 1.62345 1.05085 1.22764 1.32911 1.21943 0.99321 0.85136 0.95752 0.91077 1.22516 0.99678 1.01259 1.00871 1.19228 0.86658 0.97183 0.97758 1.21173 0.91356 1.32754 1.07791 0.92118 1.25004 0.96939 0.96277 0.96598 1.69965 1.00679 1.46785 1.37031 0.86622 0.77657 0.80247 0.83605 1.20872 1.21608 1.19996 1.22800 1.02766 0.94793 0.90704 1.22657 0.79889 0.96589 1.01763 1.87814 1.22227 1.82300 1.38828 0.91526 0.91836 0.96236 0.83202 0.94734 0.89777 0.94800 0.90348 0.94103 0.92439 0.92909 0.96234 0.96246 0.93289 0.94956 0.88103 0.89161 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.70 60.07 0.64 0.90 16 2 N -0.69 -8.13 6.86 -121.13 -0.83 -8.96 16 3 C 0.07 0.85 5.39 -3.82 -0.02 0.83 16 4 C 0.10 1.41 3.04 -26.68 -0.08 1.33 16 5 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 6 C 0.02 0.36 4.59 -3.71 -0.02 0.34 16 7 N -0.51 -9.66 4.43 -226.33 -1.00 -10.66 16 8 C 0.09 1.75 2.30 -67.71 -0.16 1.60 16 9 H 0.07 1.47 8.12 -51.93 -0.42 1.05 16 10 C -0.18 -3.19 8.49 37.15 0.32 -2.88 16 11 C 0.03 0.72 4.27 -27.88 -0.12 0.60 16 12 C -0.49 -13.67 8.84 -34.44 -0.30 -13.97 16 13 H 0.06 1.70 7.74 -52.49 -0.41 1.29 16 14 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 15 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 16 Si 0.89 22.00 29.54 -169.99 -5.02 16.98 16 17 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 20 C 0.02 0.31 4.87 -3.70 -0.02 0.30 16 21 C 0.07 1.07 7.01 37.21 0.26 1.33 16 22 O -0.39 -6.10 10.00 -35.23 -0.35 -6.46 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 26 H 0.35 4.12 8.38 -39.29 -0.33 3.79 16 27 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.03 0.53 6.56 -51.93 -0.34 0.19 16 30 H 0.08 1.18 8.13 -51.93 -0.42 0.76 16 31 H 0.04 0.63 6.58 -51.93 -0.34 0.29 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.92 6.44 -51.93 -0.33 0.58 16 34 H 0.02 0.52 6.14 -51.93 -0.32 0.20 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 38 H 0.10 2.05 6.12 -51.93 -0.32 1.73 16 39 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 310.74 15.07 4.68 4.68 Total: -1.00 -29.78 310.74 -8.31 -38.09 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -6.93 Total: 0.89 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 0.41 Total: -8.27 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: -1.10 Total: -45.91 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.35 Total: -6.46 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.78 -8.31 -38.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838048.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.230 kcal (2) G-P(sol) polarization free energy of solvation -29.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds