Wall clock time and date at job start Mon Mar 30 2020 04:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00041 * 2 1 4 4 C 1.53003 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.09010 * 109.50351 * 60.09095 * 4 3 2 6 6 C 1.53091 * 109.54350 * 180.19709 * 4 3 2 7 7 N 1.47007 * 109.25863 * 176.80718 * 6 4 3 8 8 C 1.46902 * 110.99988 * 177.60903 * 7 6 4 9 9 H 1.08994 * 109.47314 * 58.65130 * 8 7 6 10 10 C 1.52998 * 109.47196 * 298.65249 * 8 7 6 11 11 C 1.53003 * 109.47248 * 178.65166 * 8 7 6 12 12 C 1.50701 * 109.47253 * 182.86625 * 11 8 7 13 13 H 1.07997 * 120.00255 * 5.56206 * 12 11 8 14 14 C 1.37880 * 119.99845 * 185.56222 * 12 11 8 15 15 N 1.31516 * 119.99822 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00129 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46910 * 89.99881 * 16 14 12 18 18 H 1.48500 * 109.47243 * 209.99896 * 16 14 12 19 19 H 1.48496 * 109.47178 * 330.00122 * 16 14 12 20 20 C 1.47013 * 110.75471 * 301.38489 * 7 6 4 21 21 C 1.53102 * 109.25557 * 58.61721 * 20 7 6 22 22 O 1.43010 * 109.25709 * 303.15008 * 21 20 7 23 23 H 1.09000 * 109.47767 * 59.99610 * 1 2 3 24 24 H 1.09004 * 109.47052 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46941 * 299.99712 * 1 2 3 26 26 H 1.00904 * 111.00037 * 236.04917 * 2 1 3 27 27 H 1.09001 * 109.46820 * 60.00175 * 3 2 1 28 28 H 1.08997 * 109.47164 * 300.00440 * 3 2 1 29 29 H 1.09001 * 109.51228 * 296.74560 * 6 4 3 30 30 H 1.09003 * 109.50402 * 56.82794 * 6 4 3 31 31 H 1.08999 * 109.47457 * 60.00106 * 10 8 7 32 32 H 1.09004 * 109.47434 * 180.02562 * 10 8 7 33 33 H 1.09006 * 109.46970 * 299.99727 * 10 8 7 34 34 H 1.08998 * 109.47340 * 302.87111 * 11 8 7 35 35 H 1.08999 * 109.46892 * 62.86710 * 11 8 7 36 36 H 0.97000 * 119.99817 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.50745 * 298.67988 * 20 7 6 38 38 H 1.08999 * 109.50704 * 178.54701 * 20 7 6 39 39 H 1.08995 * 109.50210 * 183.21691 * 21 20 7 40 40 H 1.09001 * 109.50715 * 63.08901 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5249 1.3307 0.0006 5 1 3.8754 0.8086 -0.8898 6 6 4.0753 2.7592 0.0056 7 7 5.5426 2.7132 0.0835 8 6 6.1151 4.0652 0.0336 9 1 5.7202 4.6576 0.8589 10 6 5.7425 4.7281 -1.2940 11 6 7.6381 3.9788 0.1508 12 6 8.2201 5.3687 0.1704 13 1 7.5661 6.2277 0.1965 14 6 9.5877 5.5437 0.1550 15 7 10.0956 6.7567 0.1717 16 14 10.7190 4.0580 0.1092 17 1 10.9994 3.6928 -1.3026 18 1 11.9932 4.3846 0.7984 19 1 10.0638 2.9156 0.7952 20 6 5.9780 2.0011 1.2937 21 6 5.4085 0.5800 1.2758 22 8 3.9839 0.6442 1.1683 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8305 -0.5261 -0.7814 27 1 1.6459 1.8948 0.8900 28 1 1.6459 1.8948 -0.8899 29 1 3.7752 3.2682 -0.9104 30 1 3.6811 3.2981 0.8672 31 1 4.6574 4.7897 -1.3775 32 1 6.1676 5.7311 -1.3313 33 1 6.1374 4.1356 -2.1194 34 1 7.9029 3.4609 1.0726 35 1 8.0375 3.4296 -0.7019 36 1 11.0577 6.8799 0.1605 37 1 5.6149 2.5276 2.1763 38 1 7.0668 1.9565 1.3179 39 1 5.6812 0.0670 2.1980 40 1 5.8138 0.0362 0.4225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695838051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:39 Heat of formation + Delta-G solvation = -40.371158 kcal Electronic energy + Delta-G solvation = -18279.923143 eV Core-core repulsion = 15515.639781 eV Total energy + Delta-G solvation = -2764.283361 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.61511 -36.74212 -35.74707 -33.01629 -31.68132 -31.16311 -28.31876 -26.90530 -25.87648 -23.88258 -22.46767 -22.17246 -20.38885 -19.10978 -17.18263 -16.66369 -15.95619 -15.43675 -15.08364 -14.75536 -14.52431 -14.22112 -13.76839 -13.59677 -13.52635 -13.14475 -12.62306 -12.33333 -12.13420 -11.86171 -11.71316 -11.41366 -11.21508 -11.03779 -10.91213 -10.84361 -10.29295 -10.00384 -9.83276 -9.65157 -9.27729 -9.15144 -8.60903 -8.54100 -7.90782 -6.06115 -4.03797 3.30497 3.37960 3.41537 3.80017 3.95642 4.33256 4.44076 4.93124 5.00420 5.16069 5.21051 5.24733 5.27539 5.30284 5.41076 5.45939 5.59016 5.65402 5.66022 5.73866 5.88241 5.99586 6.04704 6.18747 6.20263 6.24113 6.58950 6.72360 6.74698 7.00201 7.08909 7.14755 7.27870 7.37217 7.52003 7.58939 7.82829 8.51230 8.97695 9.56265 11.07052 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045458 B = 0.005069 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.805323 B = 5522.590698 C = 5939.241993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.686 5.686 3 C 0.067 3.933 4 C 0.098 3.902 5 H 0.062 0.938 6 C 0.022 3.978 7 N -0.535 5.535 8 C 0.094 3.906 9 H 0.034 0.966 10 C -0.131 4.131 11 C -0.004 4.004 12 C -0.517 4.517 13 H 0.073 0.927 14 C 0.067 3.933 15 N -0.903 5.903 16 Si 0.880 3.120 17 H -0.277 1.277 18 H -0.289 1.289 19 H -0.267 1.267 20 C 0.013 3.987 21 C 0.064 3.936 22 O -0.368 6.368 23 H 0.019 0.981 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.340 0.660 27 H 0.079 0.921 28 H 0.045 0.955 29 H 0.084 0.916 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.015 0.985 35 H 0.021 0.979 36 H 0.263 0.737 37 H 0.038 0.962 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.086 -12.390 -1.207 19.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.316 5.316 3 C -0.063 4.063 4 C 0.039 3.961 5 H 0.080 0.920 6 C -0.107 4.107 7 N -0.261 5.261 8 C -0.013 4.013 9 H 0.052 0.948 10 C -0.188 4.188 11 C -0.042 4.042 12 C -0.555 4.555 13 H 0.091 0.909 14 C -0.134 4.134 15 N -0.542 5.542 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.115 4.115 21 C -0.013 4.013 22 O -0.287 6.287 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.158 0.842 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.103 0.897 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.033 0.967 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.827 -12.690 -0.790 19.532 hybrid contribution 0.481 0.275 -0.419 0.695 sum -14.346 -12.415 -1.209 19.010 Atomic orbital electron populations 1.22195 0.87911 1.01783 1.00273 1.60269 1.07307 1.13929 1.50078 1.21991 0.93009 0.90065 1.01254 1.22095 0.92828 0.92029 0.89136 0.92040 1.22729 0.89737 0.96444 1.01773 1.62332 1.06473 1.19646 1.37606 1.21643 0.97354 0.85374 0.96930 0.94830 1.21761 0.98362 1.01801 0.96907 1.19670 0.89984 0.97996 0.96556 1.21060 0.92162 0.91487 1.50824 0.90933 1.24993 0.98193 0.95613 0.94569 1.69910 1.12302 1.20886 1.51110 0.86770 0.80192 0.83698 0.78551 1.20253 1.21490 1.19139 1.22845 1.02163 0.94762 0.91707 1.22674 0.81016 0.95828 1.01784 1.88040 1.20870 1.76587 1.43192 0.96257 0.91475 0.91725 0.84211 0.90271 0.93736 0.89735 0.94424 0.94823 0.90808 0.92723 0.96661 0.96043 0.92728 0.94329 0.88775 0.88855 0.92723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.70 60.06 0.64 0.88 16 2 N -0.69 -7.21 6.72 -121.13 -0.81 -8.02 16 3 C 0.07 0.73 5.38 -3.82 -0.02 0.71 16 4 C 0.10 1.29 3.01 -26.68 -0.08 1.21 16 5 H 0.06 0.81 8.14 -51.92 -0.42 0.38 16 6 C 0.02 0.33 4.65 -3.72 -0.02 0.31 16 7 N -0.54 -9.34 4.59 -226.34 -1.04 -10.38 16 8 C 0.09 1.89 2.12 -67.71 -0.14 1.75 16 9 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 10 C -0.13 -2.45 8.79 37.16 0.33 -2.13 16 11 C 0.00 -0.11 3.25 -27.88 -0.09 -0.20 16 12 C -0.52 -14.44 8.83 -34.44 -0.30 -14.75 16 13 H 0.07 2.17 7.37 -52.49 -0.39 1.79 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.63 13.96 55.43 0.77 -26.86 16 16 Si 0.88 21.71 27.36 -169.99 -4.65 17.06 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.32 6.70 56.52 0.38 -5.94 16 20 C 0.01 0.22 5.22 -3.71 -0.02 0.20 16 21 C 0.06 0.91 7.01 37.21 0.26 1.17 16 22 O -0.37 -5.51 10.33 -35.23 -0.36 -5.88 16 23 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 24 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.34 3.19 8.82 -39.29 -0.35 2.84 16 27 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.08 1.16 6.22 -51.93 -0.32 0.84 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.03 0.53 6.38 -51.93 -0.33 0.20 16 32 H 0.07 1.52 6.92 -51.93 -0.36 1.16 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.02 0.36 5.56 -51.93 -0.29 0.08 16 35 H 0.02 0.52 7.26 -51.93 -0.38 0.14 16 36 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.09 1.66 6.03 -51.93 -0.31 1.34 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 308.89 15.07 4.65 4.65 Total: -1.00 -30.71 308.89 -7.94 -38.65 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -6.96 Total: -0.23 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 0.46 Total: -8.99 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -1.08 Total: -45.26 kcal Atomic # 8 Polarization: -5.51 SS G_CDS: -0.36 Total: -5.88 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.65 Total: 17.06 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.71 -7.94 -38.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.722 kcal (2) G-P(sol) polarization free energy of solvation -30.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds