Wall clock time and date at job start Mon Mar 30 2020 04:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46904 * 111.00041 * 2 1 4 4 C 1.53003 * 109.47226 * 179.97438 * 3 2 1 5 5 H 1.09010 * 109.50351 * 60.09095 * 4 3 2 6 6 C 1.53091 * 109.54350 * 180.19709 * 4 3 2 7 7 N 1.47007 * 109.25863 * 176.80718 * 6 4 3 8 8 C 1.46902 * 110.99988 * 177.60903 * 7 6 4 9 9 H 1.08994 * 109.47314 * 58.65130 * 8 7 6 10 10 C 1.52998 * 109.47196 * 298.65249 * 8 7 6 11 11 C 1.53003 * 109.47248 * 178.65166 * 8 7 6 12 12 C 1.50701 * 109.47253 * 182.86625 * 11 8 7 13 13 H 1.07997 * 120.00255 * 5.56206 * 12 11 8 14 14 C 1.37880 * 119.99845 * 185.56222 * 12 11 8 15 15 N 1.31516 * 119.99822 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00129 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46910 * 89.99881 * 16 14 12 18 18 H 1.48500 * 109.47243 * 209.99896 * 16 14 12 19 19 H 1.48496 * 109.47178 * 330.00122 * 16 14 12 20 20 C 1.47013 * 110.75471 * 301.38489 * 7 6 4 21 21 C 1.53102 * 109.25557 * 58.61721 * 20 7 6 22 22 O 1.43010 * 109.25709 * 303.15008 * 21 20 7 23 23 H 1.09000 * 109.47767 * 59.99610 * 1 2 3 24 24 H 1.09004 * 109.47052 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46941 * 299.99712 * 1 2 3 26 26 H 1.00904 * 111.00037 * 236.04917 * 2 1 3 27 27 H 1.09001 * 109.46820 * 60.00175 * 3 2 1 28 28 H 1.08997 * 109.47164 * 300.00440 * 3 2 1 29 29 H 1.09001 * 109.51228 * 296.74560 * 6 4 3 30 30 H 1.09003 * 109.50402 * 56.82794 * 6 4 3 31 31 H 1.08999 * 109.47457 * 60.00106 * 10 8 7 32 32 H 1.09004 * 109.47434 * 180.02562 * 10 8 7 33 33 H 1.09006 * 109.46970 * 299.99727 * 10 8 7 34 34 H 1.08998 * 109.47340 * 302.87111 * 11 8 7 35 35 H 1.08999 * 109.46892 * 62.86710 * 11 8 7 36 36 H 0.97000 * 119.99817 * 180.02562 * 15 14 12 37 37 H 1.08998 * 109.50745 * 298.67988 * 20 7 6 38 38 H 1.08999 * 109.50704 * 178.54701 * 20 7 6 39 39 H 1.08995 * 109.50210 * 183.21691 * 21 20 7 40 40 H 1.09001 * 109.50715 * 63.08901 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5249 1.3307 0.0006 5 1 3.8754 0.8086 -0.8898 6 6 4.0753 2.7592 0.0056 7 7 5.5426 2.7132 0.0835 8 6 6.1151 4.0652 0.0336 9 1 5.7202 4.6576 0.8589 10 6 5.7425 4.7281 -1.2940 11 6 7.6381 3.9788 0.1508 12 6 8.2201 5.3687 0.1704 13 1 7.5661 6.2277 0.1965 14 6 9.5877 5.5437 0.1550 15 7 10.0956 6.7567 0.1717 16 14 10.7190 4.0580 0.1092 17 1 10.9994 3.6928 -1.3026 18 1 11.9932 4.3846 0.7984 19 1 10.0638 2.9156 0.7952 20 6 5.9780 2.0011 1.2937 21 6 5.4085 0.5800 1.2758 22 8 3.9839 0.6442 1.1683 23 1 -0.3635 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8305 -0.5261 -0.7814 27 1 1.6459 1.8948 0.8900 28 1 1.6459 1.8948 -0.8899 29 1 3.7752 3.2682 -0.9104 30 1 3.6811 3.2981 0.8672 31 1 4.6574 4.7897 -1.3775 32 1 6.1676 5.7311 -1.3313 33 1 6.1374 4.1356 -2.1194 34 1 7.9029 3.4609 1.0726 35 1 8.0375 3.4296 -0.7019 36 1 11.0577 6.8799 0.1605 37 1 5.6149 2.5276 2.1763 38 1 7.0668 1.9565 1.3179 39 1 5.6812 0.0670 2.1980 40 1 5.8138 0.0362 0.4225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695838051.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:39 Heat of formation + Delta-G solvation = -64.187088 kcal Electronic energy + Delta-G solvation = -18280.955879 eV Core-core repulsion = 15515.639781 eV Total energy + Delta-G solvation = -2765.316098 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83495 -38.04226 -36.70167 -34.99396 -32.96176 -32.68334 -29.87699 -28.22207 -27.10500 -25.08459 -24.03113 -23.25308 -21.60195 -20.73523 -19.17171 -17.70393 -17.28571 -16.61420 -16.41664 -16.02660 -15.81370 -15.53423 -15.19900 -14.97304 -14.58522 -14.49668 -14.39399 -13.61880 -13.33095 -13.13088 -12.96488 -12.74627 -12.67538 -12.50252 -12.35242 -12.14628 -11.93543 -11.77456 -11.51727 -11.25586 -11.12789 -10.74485 -10.49222 -9.36096 -9.31155 -8.28840 -6.31744 1.36127 1.36931 1.48992 2.36041 2.71385 2.87375 3.06647 3.32425 3.95592 3.97158 4.05470 4.13583 4.18167 4.23820 4.35939 4.44967 4.54487 4.58314 4.62083 4.65209 4.68527 4.70066 4.86603 4.94392 5.00252 5.05980 5.06468 5.12239 5.21590 5.34617 5.49867 5.63839 5.99265 6.03468 6.13311 6.29245 6.32174 6.49259 6.74663 7.31943 8.87586 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045458 B = 0.005069 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.805323 B = 5522.590698 C = 5939.241993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.701 5.701 3 C 0.073 3.927 4 C 0.101 3.899 5 H 0.067 0.933 6 C 0.023 3.977 7 N -0.536 5.536 8 C 0.100 3.900 9 H 0.016 0.984 10 C -0.124 4.124 11 C 0.002 3.998 12 C -0.521 4.521 13 H 0.036 0.964 14 C 0.007 3.993 15 N -0.950 5.950 16 Si 0.948 3.052 17 H -0.267 1.267 18 H -0.285 1.285 19 H -0.249 1.249 20 C 0.011 3.989 21 C 0.071 3.929 22 O -0.380 6.380 23 H 0.030 0.970 24 H 0.077 0.923 25 H 0.060 0.940 26 H 0.347 0.653 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.030 0.970 31 H 0.064 0.936 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.017 0.983 35 H 0.022 0.978 36 H 0.266 0.734 37 H 0.028 0.972 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.056 -14.854 -1.758 21.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.332 5.332 3 C -0.057 4.057 4 C 0.043 3.957 5 H 0.085 0.915 6 C -0.106 4.106 7 N -0.261 5.261 8 C -0.008 4.008 9 H 0.034 0.966 10 C -0.181 4.181 11 C -0.035 4.035 12 C -0.560 4.560 13 H 0.054 0.946 14 C -0.190 4.190 15 N -0.591 5.591 16 Si 0.771 3.229 17 H -0.192 1.192 18 H -0.211 1.211 19 H -0.173 1.173 20 C -0.117 4.117 21 C -0.006 4.006 22 O -0.299 6.299 23 H 0.048 0.952 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.165 0.835 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.101 0.899 39 H 0.131 0.869 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.828 -15.170 -1.342 21.965 hybrid contribution 0.701 1.102 -0.233 1.327 sum -15.127 -14.068 -1.575 20.718 Atomic orbital electron populations 1.22221 0.86613 1.02637 1.00568 1.60242 1.08639 1.13596 1.50736 1.21907 0.91371 0.90726 1.01715 1.22168 0.94174 0.90564 0.88800 0.91474 1.22827 0.87741 0.97936 1.02079 1.62299 1.08292 1.17475 1.38066 1.21405 0.95219 0.87083 0.97070 0.96647 1.21656 1.00327 0.99976 0.96151 1.19548 0.92422 0.95123 0.96434 1.21334 0.92048 0.92595 1.50000 0.94615 1.25925 1.00059 0.98723 0.94282 1.70057 1.12854 1.23423 1.52781 0.85695 0.77881 0.80129 0.79159 1.19229 1.21112 1.17273 1.22893 1.01608 0.96270 0.90934 1.22693 0.80673 0.94067 1.03190 1.88041 1.21120 1.76677 1.44056 0.95182 0.90401 0.92138 0.83503 0.91133 0.91918 0.88430 0.95140 0.91669 0.93587 0.92389 0.96489 0.95968 0.92539 0.95369 0.89926 0.86883 0.92013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.70 127.69 1.37 1.77 16 2 N -0.70 -12.95 6.72 -537.14 -3.61 -16.56 16 3 C 0.07 1.42 5.38 86.30 0.46 1.88 16 4 C 0.10 2.42 3.01 30.63 0.09 2.51 16 5 H 0.07 1.55 8.14 -2.38 -0.02 1.54 16 6 C 0.02 0.62 4.65 86.31 0.40 1.03 16 7 N -0.54 -17.91 4.59 -870.00 -4.00 -21.91 16 8 C 0.10 4.00 2.12 44.92 0.10 4.10 16 9 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 10 C -0.12 -4.56 8.79 71.98 0.63 -3.93 16 11 C 0.00 0.11 3.25 29.85 0.10 0.21 16 12 C -0.52 -29.84 8.83 25.60 0.23 -29.61 16 13 H 0.04 2.24 7.37 -2.91 -0.02 2.22 16 14 C 0.01 0.40 5.47 84.66 0.46 0.87 16 15 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 16 Si 0.95 44.51 27.36 68.60 1.88 46.39 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 19 H -0.25 -10.90 6.70 99.48 0.67 -10.23 16 20 C 0.01 0.36 5.22 86.32 0.45 0.81 16 21 C 0.07 1.83 7.01 72.02 0.50 2.34 16 22 O -0.38 -10.48 10.33 -148.98 -1.54 -12.02 16 23 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.35 5.55 8.82 -89.69 -0.79 4.76 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.10 2.40 6.22 -2.39 -0.01 2.39 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.06 1.96 6.38 -2.39 -0.02 1.94 16 32 H 0.05 1.93 6.92 -2.38 -0.02 1.92 16 33 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.02 0.80 5.56 -2.39 -0.01 0.78 16 35 H 0.02 1.04 7.26 -2.39 -0.02 1.02 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 38 H 0.08 2.80 6.03 -2.39 -0.01 2.79 16 39 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -66.30 308.89 -2.01 -68.30 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.17 Total: 13.12 kcal Atomic # 6 Polarization: -22.83 SS G_CDS: 4.79 Total: -18.03 kcal Atomic # 7 Polarization: -90.45 SS G_CDS: -7.31 Total: -97.76 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: -1.54 Total: -12.02 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 1.88 Total: 46.39 kcal Total: -66.30 -2.01 -68.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838051.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.113 kcal (2) G-P(sol) polarization free energy of solvation -66.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds