Wall clock time and date at job start Mon Mar 30 2020 04:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46908 * 110.99561 * 2 1 4 4 C 1.53002 * 109.46811 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.54592 * 59.88808 * 4 3 2 6 6 C 1.53096 * 109.50411 * 180.02562 * 4 3 2 7 7 N 1.47016 * 109.25899 * 176.78355 * 6 4 3 8 8 C 1.46900 * 111.00239 * 177.60610 * 7 6 4 9 9 H 1.09000 * 109.47150 * 300.00082 * 8 7 6 10 10 C 1.53007 * 109.46816 * 59.99864 * 8 7 6 11 11 C 1.53002 * 109.47123 * 179.97438 * 8 7 6 12 12 C 1.50698 * 109.46737 * 65.00248 * 11 8 7 13 13 H 1.08005 * 120.00331 * 359.97438 * 12 11 8 14 14 C 1.37877 * 119.99973 * 179.97438 * 12 11 8 15 15 N 1.31517 * 120.00178 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00166 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46868 * 89.99989 * 16 14 12 18 18 H 1.48499 * 109.47419 * 209.99839 * 16 14 12 19 19 H 1.48497 * 109.47156 * 330.00231 * 16 14 12 20 20 C 1.47015 * 110.75095 * 301.38372 * 7 6 4 21 21 C 1.53097 * 109.26158 * 58.61128 * 20 7 6 22 22 O 1.43013 * 109.25870 * 303.15664 * 21 20 7 23 23 H 1.08992 * 109.47231 * 59.99950 * 1 2 3 24 24 H 1.09002 * 109.46319 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47136 * 300.00114 * 1 2 3 26 26 H 1.00897 * 111.00059 * 236.05076 * 2 1 3 27 27 H 1.09000 * 109.47191 * 60.00167 * 3 2 1 28 28 H 1.08998 * 109.47238 * 299.99767 * 3 2 1 29 29 H 1.09004 * 109.51061 * 56.84979 * 6 4 3 30 30 H 1.08999 * 109.51030 * 296.71322 * 6 4 3 31 31 H 1.09000 * 109.47083 * 60.00178 * 10 8 7 32 32 H 1.09003 * 109.46622 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.46963 * 299.99799 * 10 8 7 34 34 H 1.09001 * 109.46941 * 184.99581 * 11 8 7 35 35 H 1.08992 * 109.47211 * 305.00171 * 11 8 7 36 36 H 0.97000 * 120.00365 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.50762 * 178.55392 * 20 7 6 38 38 H 1.09010 * 109.50807 * 298.67740 * 20 7 6 39 39 H 1.08991 * 109.51223 * 183.21641 * 21 20 7 40 40 H 1.09002 * 109.50310 * 63.08603 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5249 1.3308 -0.0006 5 1 3.8753 0.8061 -0.8894 6 6 4.0743 2.7597 0.0000 7 7 5.5417 2.7150 0.0772 8 6 6.1133 4.0672 0.0232 9 1 5.8271 4.5454 -0.9135 10 6 5.5850 4.8915 1.1990 11 6 7.6385 3.9799 0.1066 12 6 8.1687 3.2738 -1.1146 13 1 7.4861 2.9221 -1.8741 14 6 9.5253 3.0768 -1.2624 15 7 10.3567 3.5055 -0.3379 16 14 10.1826 2.2010 -2.7758 17 1 10.4626 3.1967 -3.8413 18 1 11.4351 1.4832 -2.4276 19 1 9.1725 1.2269 -3.2617 20 6 5.9782 2.0066 1.2893 21 6 5.4096 0.5852 1.2758 22 8 3.9849 0.6480 1.1688 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8306 -0.5260 -0.7814 27 1 1.6459 1.8949 0.8900 28 1 1.6459 1.8949 -0.8900 29 1 3.6809 3.3006 0.8607 30 1 3.7735 3.2658 -0.9173 31 1 5.8712 4.4132 2.1357 32 1 6.0095 5.8947 1.1591 33 1 4.4984 4.9537 1.1399 34 1 8.0578 4.9848 0.1559 35 1 7.9223 3.4235 0.9999 36 1 11.3111 3.3672 -0.4420 37 1 7.0670 1.9629 1.3132 38 1 5.6152 2.5355 2.1707 39 1 5.6831 0.0750 2.1993 40 1 5.8148 0.0392 0.4239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695838052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:43 Heat of formation + Delta-G solvation = -40.165601 kcal Electronic energy + Delta-G solvation = -18511.176277 eV Core-core repulsion = 15746.901829 eV Total energy + Delta-G solvation = -2764.274448 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.50341 -36.70157 -35.59875 -32.82089 -31.49620 -30.64839 -27.82843 -27.12680 -25.40358 -23.67111 -22.94509 -22.24185 -20.44211 -18.66784 -16.66336 -16.21961 -15.82511 -15.25325 -15.08540 -14.56811 -14.41341 -14.36845 -13.82198 -13.54939 -13.18914 -12.92119 -12.30027 -12.13123 -11.94577 -11.80374 -11.64014 -11.42126 -11.07322 -11.02599 -10.77139 -10.60039 -10.40314 -10.01101 -9.94063 -9.31899 -9.06411 -8.96893 -8.51184 -8.28938 -7.53874 -5.92055 -3.90617 3.36955 3.43463 3.48236 3.96613 4.11506 4.52234 4.56132 5.06703 5.13146 5.28504 5.34341 5.38057 5.44870 5.49213 5.57017 5.64519 5.71770 5.72315 5.83045 5.86789 5.94585 5.97314 6.04312 6.20609 6.37443 6.43555 6.61071 6.70309 6.85228 6.92472 7.25048 7.48056 7.56587 7.65039 7.85088 7.95404 8.09035 8.53683 9.15755 9.71729 11.19712 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028753 B = 0.005865 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.594519 B = 4772.771927 C = 5172.062087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.685 5.685 3 C 0.068 3.932 4 C 0.098 3.902 5 H 0.062 0.938 6 C 0.021 3.979 7 N -0.509 5.509 8 C 0.086 3.914 9 H 0.071 0.929 10 C -0.185 4.185 11 C 0.027 3.973 12 C -0.494 4.494 13 H 0.060 0.940 14 C 0.052 3.948 15 N -0.903 5.903 16 Si 0.889 3.111 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.274 1.274 20 C 0.017 3.983 21 C 0.064 3.936 22 O -0.371 6.371 23 H 0.018 0.982 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.341 0.659 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.019 0.981 35 H 0.021 0.979 36 H 0.258 0.742 37 H 0.104 0.896 38 H 0.032 0.968 39 H 0.091 0.909 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.618 -3.735 1.532 16.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.316 5.316 3 C -0.062 4.062 4 C 0.039 3.961 5 H 0.080 0.920 6 C -0.108 4.108 7 N -0.233 5.233 8 C -0.021 4.021 9 H 0.089 0.911 10 C -0.243 4.243 11 C -0.010 4.010 12 C -0.532 4.532 13 H 0.079 0.921 14 C -0.148 4.148 15 N -0.544 5.544 16 Si 0.718 3.282 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.111 4.111 21 C -0.013 4.013 22 O -0.290 6.290 23 H 0.037 0.963 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.159 0.841 27 H 0.096 0.904 28 H 0.061 0.939 29 H 0.056 0.944 30 H 0.094 0.906 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.039 0.961 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.050 0.950 39 H 0.109 0.891 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.339 -4.147 1.982 16.013 hybrid contribution 0.223 0.485 -1.208 1.321 sum -15.115 -3.662 0.774 15.572 Atomic orbital electron populations 1.22190 0.88069 1.01712 1.00155 1.60269 1.07151 1.14013 1.50155 1.21988 0.93276 0.89949 1.00992 1.22063 0.92493 0.92230 0.89287 0.92009 1.22725 0.90725 0.96319 1.01070 1.62345 1.05034 1.18368 1.37506 1.21936 0.98802 0.85535 0.95877 0.91120 1.22519 0.99689 1.01326 1.00810 1.19267 0.86702 0.97253 0.97821 1.21172 0.91336 1.35534 1.05169 0.92129 1.25006 0.97256 0.96216 0.96308 1.69962 1.02683 1.47701 1.34013 0.86634 0.78281 0.79832 0.83474 1.20979 1.21516 1.19911 1.22823 1.02993 0.94183 0.91101 1.22681 0.80562 0.96332 1.01768 1.88006 1.21261 1.76831 1.42914 0.96344 0.91528 0.91812 0.84129 0.90447 0.93916 0.94439 0.90650 0.92974 0.92473 0.93968 0.96242 0.96073 0.93257 0.87818 0.95014 0.89139 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.70 60.07 0.64 0.90 16 2 N -0.69 -7.97 6.73 -121.13 -0.81 -8.78 16 3 C 0.07 0.82 5.38 -3.82 -0.02 0.80 16 4 C 0.10 1.44 3.01 -26.68 -0.08 1.36 16 5 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 6 C 0.02 0.33 4.48 -3.71 -0.02 0.31 16 7 N -0.51 -9.73 4.47 -226.32 -1.01 -10.74 16 8 C 0.09 1.76 2.37 -67.71 -0.16 1.59 16 9 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 10 C -0.18 -3.22 8.49 37.16 0.32 -2.90 16 11 C 0.03 0.66 4.14 -27.88 -0.12 0.55 16 12 C -0.49 -13.64 8.84 -34.44 -0.30 -13.95 16 13 H 0.06 1.68 7.74 -52.48 -0.41 1.28 16 14 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 15 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 16 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 C 0.02 0.31 4.88 -3.71 -0.02 0.30 16 21 C 0.06 1.05 7.01 37.21 0.26 1.31 16 22 O -0.37 -6.15 10.34 -35.23 -0.36 -6.52 16 23 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.34 3.64 8.81 -39.29 -0.35 3.30 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.04 0.59 6.44 -51.93 -0.33 0.25 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.92 6.54 -51.93 -0.34 0.58 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.04 0.65 6.46 -51.93 -0.34 0.32 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.02 0.56 6.02 -51.93 -0.31 0.24 16 36 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 37 H 0.10 2.18 6.00 -51.93 -0.31 1.87 16 38 H 0.03 0.57 6.52 -51.92 -0.34 0.23 16 39 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -30.18 311.00 -8.32 -38.50 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -6.93 Total: 0.55 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 0.41 Total: -8.35 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: -1.09 Total: -45.68 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.36 Total: -6.52 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.18 -8.32 -38.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.668 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds