Wall clock time and date at job start Mon Mar 30 2020 04:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46908 * 110.99561 * 2 1 4 4 C 1.53002 * 109.46811 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.54592 * 59.88808 * 4 3 2 6 6 C 1.53096 * 109.50411 * 180.02562 * 4 3 2 7 7 N 1.47016 * 109.25899 * 176.78355 * 6 4 3 8 8 C 1.46900 * 111.00239 * 177.60610 * 7 6 4 9 9 H 1.09000 * 109.47150 * 300.00082 * 8 7 6 10 10 C 1.53007 * 109.46816 * 59.99864 * 8 7 6 11 11 C 1.53002 * 109.47123 * 179.97438 * 8 7 6 12 12 C 1.50698 * 109.46737 * 65.00248 * 11 8 7 13 13 H 1.08005 * 120.00331 * 359.97438 * 12 11 8 14 14 C 1.37877 * 119.99973 * 179.97438 * 12 11 8 15 15 N 1.31517 * 120.00178 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00166 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46868 * 89.99989 * 16 14 12 18 18 H 1.48499 * 109.47419 * 209.99839 * 16 14 12 19 19 H 1.48497 * 109.47156 * 330.00231 * 16 14 12 20 20 C 1.47015 * 110.75095 * 301.38372 * 7 6 4 21 21 C 1.53097 * 109.26158 * 58.61128 * 20 7 6 22 22 O 1.43013 * 109.25870 * 303.15664 * 21 20 7 23 23 H 1.08992 * 109.47231 * 59.99950 * 1 2 3 24 24 H 1.09002 * 109.46319 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47136 * 300.00114 * 1 2 3 26 26 H 1.00897 * 111.00059 * 236.05076 * 2 1 3 27 27 H 1.09000 * 109.47191 * 60.00167 * 3 2 1 28 28 H 1.08998 * 109.47238 * 299.99767 * 3 2 1 29 29 H 1.09004 * 109.51061 * 56.84979 * 6 4 3 30 30 H 1.08999 * 109.51030 * 296.71322 * 6 4 3 31 31 H 1.09000 * 109.47083 * 60.00178 * 10 8 7 32 32 H 1.09003 * 109.46622 * 179.97438 * 10 8 7 33 33 H 1.08995 * 109.46963 * 299.99799 * 10 8 7 34 34 H 1.09001 * 109.46941 * 184.99581 * 11 8 7 35 35 H 1.08992 * 109.47211 * 305.00171 * 11 8 7 36 36 H 0.97000 * 120.00365 * 180.02562 * 15 14 12 37 37 H 1.08996 * 109.50762 * 178.55392 * 20 7 6 38 38 H 1.09010 * 109.50807 * 298.67740 * 20 7 6 39 39 H 1.08991 * 109.51223 * 183.21641 * 21 20 7 40 40 H 1.09002 * 109.50310 * 63.08603 * 21 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5249 1.3308 -0.0006 5 1 3.8753 0.8061 -0.8894 6 6 4.0743 2.7597 0.0000 7 7 5.5417 2.7150 0.0772 8 6 6.1133 4.0672 0.0232 9 1 5.8271 4.5454 -0.9135 10 6 5.5850 4.8915 1.1990 11 6 7.6385 3.9799 0.1066 12 6 8.1687 3.2738 -1.1146 13 1 7.4861 2.9221 -1.8741 14 6 9.5253 3.0768 -1.2624 15 7 10.3567 3.5055 -0.3379 16 14 10.1826 2.2010 -2.7758 17 1 10.4626 3.1967 -3.8413 18 1 11.4351 1.4832 -2.4276 19 1 9.1725 1.2269 -3.2617 20 6 5.9782 2.0066 1.2893 21 6 5.4096 0.5852 1.2758 22 8 3.9849 0.6480 1.1688 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3632 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8306 -0.5260 -0.7814 27 1 1.6459 1.8949 0.8900 28 1 1.6459 1.8949 -0.8900 29 1 3.6809 3.3006 0.8607 30 1 3.7735 3.2658 -0.9173 31 1 5.8712 4.4132 2.1357 32 1 6.0095 5.8947 1.1591 33 1 4.4984 4.9537 1.1399 34 1 8.0578 4.9848 0.1559 35 1 7.9223 3.4235 0.9999 36 1 11.3111 3.3672 -0.4420 37 1 7.0670 1.9629 1.3132 38 1 5.6152 2.5355 2.1707 39 1 5.6831 0.0750 2.1993 40 1 5.8148 0.0392 0.4239 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695838052.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:42 Heat of formation + Delta-G solvation = -62.706064 kcal Electronic energy + Delta-G solvation = -18512.153705 eV Core-core repulsion = 15746.901829 eV Total energy + Delta-G solvation = -2765.251876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.85989 -38.05233 -36.65241 -34.86340 -32.77547 -32.21781 -29.46450 -28.53452 -26.63404 -25.10446 -24.55222 -23.43655 -21.79958 -20.22384 -18.36999 -17.79230 -17.23234 -16.56339 -16.34185 -16.23207 -15.78537 -15.61796 -15.00033 -14.74505 -14.66893 -14.21912 -13.94331 -13.67282 -13.26762 -13.15936 -12.86338 -12.84593 -12.66573 -12.43952 -12.37516 -12.21833 -12.00255 -11.88044 -11.32567 -11.09281 -11.02594 -10.48442 -10.44116 -9.33358 -9.01499 -8.10754 -6.16052 1.41993 1.42822 1.54078 2.46983 2.79665 2.96006 3.24043 3.38379 3.98433 4.04749 4.12693 4.19879 4.22709 4.29062 4.39096 4.50941 4.51692 4.57395 4.65242 4.67878 4.70483 4.71162 4.91431 4.98165 5.04988 5.06361 5.08361 5.16608 5.25557 5.48001 5.68462 5.88645 6.02220 6.22968 6.27274 6.37021 6.45756 6.49164 6.97706 7.50335 9.01125 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028753 B = 0.005865 C = 0.005412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.594519 B = 4772.771927 C = 5172.062087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.703 5.703 3 C 0.076 3.924 4 C 0.098 3.902 5 H 0.055 0.945 6 C 0.024 3.976 7 N -0.528 5.528 8 C 0.094 3.906 9 H 0.068 0.932 10 C -0.174 4.174 11 C 0.033 3.967 12 C -0.501 4.501 13 H 0.057 0.943 14 C -0.002 4.002 15 N -0.939 5.939 16 Si 0.955 3.045 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.268 1.268 20 C 0.023 3.977 21 C 0.071 3.929 22 O -0.378 6.378 23 H 0.029 0.971 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.345 0.655 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.067 0.933 34 H -0.008 1.008 35 H 0.001 0.999 36 H 0.259 0.741 37 H 0.070 0.930 38 H 0.036 0.964 39 H 0.110 0.890 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.496 -4.291 0.813 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.334 5.334 3 C -0.054 4.054 4 C 0.040 3.960 5 H 0.073 0.927 6 C -0.104 4.104 7 N -0.252 5.252 8 C -0.014 4.014 9 H 0.086 0.914 10 C -0.233 4.233 11 C -0.004 4.004 12 C -0.540 4.540 13 H 0.075 0.925 14 C -0.198 4.198 15 N -0.581 5.581 16 Si 0.781 3.219 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.192 1.192 20 C -0.105 4.105 21 C -0.006 4.006 22 O -0.296 6.296 23 H 0.048 0.952 24 H 0.095 0.905 25 H 0.081 0.919 26 H 0.163 0.837 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.106 0.894 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.011 0.989 35 H 0.020 0.980 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.054 0.946 39 H 0.128 0.872 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.243 -4.704 1.258 17.918 hybrid contribution 0.781 0.658 -0.976 1.412 sum -16.463 -4.046 0.282 16.955 Atomic orbital electron populations 1.22222 0.86500 1.02603 1.00634 1.60255 1.08728 1.13731 1.50697 1.21893 0.91044 0.90632 1.01797 1.22180 0.94315 0.91124 0.88408 0.92702 1.22787 0.88262 0.97425 1.01959 1.62252 1.07405 1.17543 1.37980 1.21657 0.95637 0.87064 0.97084 0.91363 1.22385 1.01170 1.00688 0.99058 1.19118 0.90292 0.94899 0.96132 1.21462 0.91537 1.35237 1.05738 0.92461 1.25824 0.97686 0.97061 0.99244 1.70087 1.02929 1.49089 1.35968 0.85593 0.77595 0.78799 0.79900 1.20186 1.21255 1.19221 1.22694 1.00986 0.95632 0.91177 1.22624 0.80736 0.94862 1.02417 1.88010 1.20805 1.77043 1.43769 0.95207 0.90517 0.91882 0.83722 0.90608 0.92027 0.93744 0.89371 0.93476 0.92226 0.91387 0.98932 0.98036 0.93227 0.91212 0.94569 0.87185 0.93418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.70 127.69 1.37 1.83 16 2 N -0.70 -14.67 6.73 -537.13 -3.61 -18.28 16 3 C 0.08 1.64 5.38 86.30 0.46 2.10 16 4 C 0.10 2.70 3.01 30.63 0.09 2.80 16 5 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 6 C 0.02 0.72 4.48 86.31 0.39 1.10 16 7 N -0.53 -19.86 4.47 -869.94 -3.89 -23.75 16 8 C 0.09 3.79 2.37 44.92 0.11 3.90 16 9 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 10 C -0.17 -5.87 8.49 71.98 0.61 -5.26 16 11 C 0.03 1.68 4.14 29.85 0.12 1.81 16 12 C -0.50 -28.15 8.84 25.60 0.23 -27.92 16 13 H 0.06 3.19 7.74 -2.91 -0.02 3.17 16 14 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 15 N -0.94 -57.10 13.29 21.45 0.28 -56.81 16 16 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 17 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 20 C 0.02 0.86 4.88 86.31 0.42 1.28 16 21 C 0.07 2.27 7.01 72.01 0.50 2.78 16 22 O -0.38 -11.88 10.34 -148.98 -1.54 -13.42 16 23 H 0.03 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.34 6.64 8.81 -89.70 -0.79 5.85 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 29 H 0.04 1.27 6.44 -2.39 -0.02 1.25 16 30 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.05 1.62 6.54 -2.39 -0.02 1.61 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.07 1.94 6.46 -2.39 -0.02 1.92 16 34 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.00 0.08 6.02 -2.39 -0.01 0.07 16 36 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 37 H 0.07 3.05 6.00 -2.39 -0.01 3.04 16 38 H 0.04 1.29 6.52 -2.38 -0.02 1.28 16 39 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 40 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -64.45 311.00 -1.75 -66.20 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 0.21 Total: 14.20 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.77 Total: -15.23 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -7.22 Total: -98.84 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -1.54 Total: -13.42 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -64.45 -1.75 -66.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695838052.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.493 kcal (2) G-P(sol) polarization free energy of solvation -64.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds