Wall clock time and date at job start Mon Mar 30 2020 04:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47280 * 2 1 4 4 C 1.53003 * 109.46998 * 239.99367 * 2 1 3 5 5 C 1.50703 * 109.46934 * 176.08140 * 4 2 1 6 6 H 1.07995 * 119.99798 * 355.06421 * 5 4 2 7 7 C 1.37875 * 119.99727 * 175.06726 * 5 4 2 8 8 N 1.31518 * 119.99602 * 180.02562 * 7 5 4 9 9 Si 1.86791 * 120.00192 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47434 * 270.00138 * 9 7 5 11 11 H 1.48501 * 109.47090 * 30.00394 * 9 7 5 12 12 H 1.48504 * 109.47296 * 150.00407 * 9 7 5 13 13 N 1.46904 * 109.46901 * 119.99689 * 2 1 3 14 14 C 1.46898 * 111.00085 * 288.69250 * 13 2 1 15 15 C 1.46900 * 110.99988 * 52.64966 * 13 2 1 16 16 C 1.53002 * 109.47178 * 169.99757 * 15 13 2 17 17 H 1.09003 * 109.50193 * 60.08418 * 16 15 13 18 18 C 1.53096 * 109.50749 * 180.21731 * 16 15 13 19 19 N 1.47010 * 109.25687 * 176.78638 * 18 16 15 20 20 C 1.47008 * 110.75383 * 301.38297 * 19 18 16 21 21 C 1.53096 * 109.25839 * 58.61762 * 20 19 18 22 22 O 1.43014 * 109.50767 * 300.00092 * 16 15 13 23 23 H 1.08994 * 109.47073 * 60.00644 * 1 2 3 24 24 H 1.09004 * 109.47465 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47391 * 300.00323 * 1 2 3 26 26 H 1.09001 * 109.46743 * 56.08100 * 4 2 1 27 27 H 1.08998 * 109.47220 * 296.07965 * 4 2 1 28 28 H 0.97003 * 119.99394 * 180.02562 * 8 7 5 29 29 H 1.09008 * 109.46870 * 59.13862 * 14 13 2 30 30 H 1.08998 * 109.47034 * 179.13607 * 14 13 2 31 31 H 1.08999 * 109.47444 * 299.13605 * 14 13 2 32 32 H 1.08996 * 109.47175 * 289.99637 * 15 13 2 33 33 H 1.09003 * 109.47098 * 50.00029 * 15 13 2 34 34 H 1.09000 * 109.50478 * 296.71740 * 18 16 15 35 35 H 1.08996 * 109.50989 * 56.84732 * 18 16 15 36 36 H 1.00898 * 111.00294 * 65.16006 * 19 18 16 37 37 H 1.09010 * 109.50365 * 298.68147 * 20 19 18 38 38 H 1.09001 * 109.54354 * 178.57522 * 20 19 18 39 39 H 1.09002 * 109.50647 * 183.21839 * 21 20 19 40 40 H 1.08996 * 109.51104 * 63.09015 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5439 -0.6379 -1.2987 6 1 4.0768 -0.0551 -0.5621 7 6 4.2393 -1.3054 -2.2845 8 7 5.5518 -1.2329 -2.3273 9 14 3.3174 -2.3139 -3.5581 10 1 3.1634 -3.7076 -3.0692 11 1 1.9764 -1.7180 -3.7853 12 1 4.0797 -2.3180 -4.8326 13 7 2.0196 -0.6925 1.1995 14 6 1.7807 0.1112 2.4057 15 6 1.4106 -2.0234 1.3245 16 6 2.1202 -2.8072 2.4305 17 1 2.0208 -2.2736 3.3758 18 6 1.4897 -4.1964 2.5578 19 7 2.2246 -4.9717 3.5677 20 6 3.6428 -5.0936 3.2005 21 6 4.2518 -3.6954 3.0668 22 8 3.5056 -2.9460 2.1039 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6204 -0.2498 -2.1378 27 1 1.7352 -1.7673 -1.2147 28 1 6.0409 -1.7023 -3.0211 29 1 0.7126 0.3028 2.5090 30 1 2.1388 -0.4314 3.2806 31 1 2.3134 1.0585 2.3226 32 1 0.3549 -1.9179 1.5740 33 1 1.5091 -2.5582 0.3798 34 1 0.4479 -4.0968 2.8625 35 1 1.5411 -4.7089 1.5972 36 1 2.1223 -4.5612 4.4837 37 1 3.7287 -5.6205 2.2501 38 1 4.1733 -5.6492 3.9738 39 1 5.2879 -3.7794 2.7390 40 1 4.2145 -3.1883 4.0309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695840012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:13 Heat of formation + Delta-G solvation = -31.877196 kcal Electronic energy + Delta-G solvation = -18961.657225 eV Core-core repulsion = 16197.742190 eV Total energy + Delta-G solvation = -2763.915036 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.53852 -37.66588 -34.23676 -32.98674 -31.90005 -30.46956 -27.81358 -27.38007 -25.41360 -24.15471 -22.69748 -21.70915 -20.73714 -18.69254 -16.50428 -16.27933 -16.16153 -15.63645 -15.11775 -14.74532 -14.34712 -14.16865 -13.77339 -13.37340 -12.92572 -12.45258 -12.39861 -12.14659 -11.96847 -11.77826 -11.56751 -11.28956 -11.23763 -11.00285 -10.90762 -10.69754 -10.64138 -10.06427 -9.74171 -9.61596 -9.46623 -8.93791 -8.31735 -8.14854 -7.43392 -5.80670 -3.73025 3.41630 3.48518 3.50429 4.06445 4.17113 4.46719 4.62605 4.96245 5.13341 5.15754 5.26394 5.32658 5.47616 5.52466 5.56662 5.61314 5.72584 5.75831 5.80962 5.89505 5.93040 5.96716 6.01178 6.05475 6.28866 6.31709 6.44957 6.56855 6.79867 6.82798 7.18655 7.22935 7.36340 7.56857 7.85525 7.88763 8.04642 8.81866 9.32358 9.82580 11.33930 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.009009 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.607211 B = 3107.370382 C = 3859.109653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.095 3.905 3 H 0.075 0.925 4 C -0.005 4.005 5 C -0.481 4.481 6 H 0.077 0.923 7 C 0.063 3.937 8 N -0.908 5.908 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.270 1.270 12 H -0.291 1.291 13 N -0.501 5.501 14 C 0.023 3.977 15 C 0.066 3.934 16 C 0.059 3.941 17 H 0.049 0.951 18 C 0.024 3.976 19 N -0.683 5.683 20 C 0.018 3.982 21 C 0.020 3.980 22 O -0.334 6.334 23 H 0.057 0.943 24 H 0.051 0.949 25 H 0.043 0.957 26 H 0.015 0.985 27 H 0.012 0.988 28 H 0.257 0.743 29 H 0.014 0.986 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.336 0.664 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.024 -4.031 12.112 15.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.013 4.013 3 H 0.093 0.907 4 C -0.042 4.042 5 C -0.519 4.519 6 H 0.095 0.905 7 C -0.136 4.136 8 N -0.549 5.549 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.195 1.195 12 H -0.218 1.218 13 N -0.223 5.223 14 C -0.125 4.125 15 C -0.063 4.063 16 C -0.001 4.001 17 H 0.067 0.933 18 C -0.106 4.106 19 N -0.311 5.311 20 C -0.111 4.111 21 C -0.060 4.060 22 O -0.251 6.251 23 H 0.076 0.924 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.033 0.967 27 H 0.030 0.970 28 H 0.067 0.933 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.153 0.847 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.451 -4.704 11.515 15.038 hybrid contribution -0.978 0.272 -0.155 1.027 sum -9.429 -4.432 11.360 15.414 Atomic orbital electron populations 1.22574 0.99816 1.01261 1.01018 1.21723 0.89714 0.98499 0.91402 0.90657 1.19670 0.98215 0.94825 0.91500 1.20974 0.89026 1.29712 1.12190 0.90479 1.24965 0.94612 0.96546 0.97524 1.69917 1.06072 1.44447 1.34474 0.86937 0.80281 0.81257 0.81631 1.20621 1.19487 1.21760 1.61972 1.57691 1.01175 1.01471 1.22415 0.97848 0.98492 0.93770 1.22049 0.93684 0.91320 0.99243 1.22828 0.84106 0.95109 0.98076 0.93303 1.22697 0.97762 0.92859 0.97325 1.60918 1.11046 1.53978 1.05200 1.22701 0.88442 0.97183 1.02799 1.23222 0.97522 0.92040 0.93166 1.88484 1.18461 1.72812 1.45369 0.92435 0.92979 0.93761 0.96709 0.97009 0.93267 0.96755 0.92542 0.91752 0.94417 0.89164 0.90121 0.89670 0.84726 0.89794 0.90099 0.88405 0.94067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.02 8.44 37.16 0.31 -2.71 16 2 C 0.09 1.90 2.26 -67.71 -0.15 1.74 16 3 H 0.08 1.56 8.05 -51.93 -0.42 1.14 16 4 C 0.00 -0.11 3.45 -27.88 -0.10 -0.21 16 5 C -0.48 -14.02 9.36 -34.44 -0.32 -14.34 16 6 H 0.08 2.48 7.99 -52.49 -0.42 2.06 16 7 C 0.06 1.88 5.47 -17.82 -0.10 1.79 16 8 N -0.91 -29.05 13.96 55.43 0.77 -28.27 16 9 Si 0.87 22.49 27.37 -169.99 -4.65 17.84 16 10 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 11 H -0.27 -6.66 6.69 56.52 0.38 -6.28 16 12 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 13 N -0.50 -9.67 4.26 -234.88 -1.00 -10.67 16 14 C 0.02 0.37 9.21 60.06 0.55 0.92 16 15 C 0.07 1.13 3.56 -3.82 -0.01 1.12 16 16 C 0.06 0.92 2.68 -26.68 -0.07 0.85 16 17 H 0.05 0.71 6.46 -51.93 -0.34 0.37 16 18 C 0.02 0.32 6.05 -3.71 -0.02 0.29 16 19 N -0.68 -8.30 6.93 -113.50 -0.79 -9.09 16 20 C 0.02 0.23 6.76 -3.72 -0.03 0.20 16 21 C 0.02 0.28 7.01 37.21 0.26 0.55 16 22 O -0.33 -6.40 10.33 -35.23 -0.36 -6.76 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.05 0.81 6.54 -51.93 -0.34 0.47 16 25 H 0.04 0.63 6.72 -51.93 -0.35 0.28 16 26 H 0.01 0.36 7.54 -51.93 -0.39 -0.03 16 27 H 0.01 0.29 5.41 -51.93 -0.28 0.01 16 28 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 29 H 0.01 0.20 6.64 -51.92 -0.34 -0.15 16 30 H 0.06 0.83 6.27 -51.93 -0.33 0.51 16 31 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 32 H 0.04 0.56 6.82 -51.93 -0.35 0.21 16 33 H 0.09 1.79 6.09 -51.93 -0.32 1.47 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.34 3.47 8.89 -39.29 -0.35 3.13 16 37 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 304.86 15.07 4.59 4.59 Total: -1.00 -32.93 304.86 -7.87 -40.80 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.76 Total: 1.35 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 0.33 Total: -9.79 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -1.01 Total: -48.03 kcal Atomic # 8 Polarization: -6.40 SS G_CDS: -0.36 Total: -6.76 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.65 Total: 17.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.93 -7.87 -40.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.926 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds