Wall clock time and date at job start Mon Mar 30 2020 04:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47280 * 2 1 4 4 C 1.53003 * 109.46998 * 239.99367 * 2 1 3 5 5 C 1.50703 * 109.46934 * 176.08140 * 4 2 1 6 6 H 1.07995 * 119.99798 * 355.06421 * 5 4 2 7 7 C 1.37875 * 119.99727 * 175.06726 * 5 4 2 8 8 N 1.31518 * 119.99602 * 180.02562 * 7 5 4 9 9 Si 1.86791 * 120.00192 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.47434 * 270.00138 * 9 7 5 11 11 H 1.48501 * 109.47090 * 30.00394 * 9 7 5 12 12 H 1.48504 * 109.47296 * 150.00407 * 9 7 5 13 13 N 1.46904 * 109.46901 * 119.99689 * 2 1 3 14 14 C 1.46898 * 111.00085 * 288.69250 * 13 2 1 15 15 C 1.46900 * 110.99988 * 52.64966 * 13 2 1 16 16 C 1.53002 * 109.47178 * 169.99757 * 15 13 2 17 17 H 1.09003 * 109.50193 * 60.08418 * 16 15 13 18 18 C 1.53096 * 109.50749 * 180.21731 * 16 15 13 19 19 N 1.47010 * 109.25687 * 176.78638 * 18 16 15 20 20 C 1.47008 * 110.75383 * 301.38297 * 19 18 16 21 21 C 1.53096 * 109.25839 * 58.61762 * 20 19 18 22 22 O 1.43014 * 109.50767 * 300.00092 * 16 15 13 23 23 H 1.08994 * 109.47073 * 60.00644 * 1 2 3 24 24 H 1.09004 * 109.47465 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47391 * 300.00323 * 1 2 3 26 26 H 1.09001 * 109.46743 * 56.08100 * 4 2 1 27 27 H 1.08998 * 109.47220 * 296.07965 * 4 2 1 28 28 H 0.97003 * 119.99394 * 180.02562 * 8 7 5 29 29 H 1.09008 * 109.46870 * 59.13862 * 14 13 2 30 30 H 1.08998 * 109.47034 * 179.13607 * 14 13 2 31 31 H 1.08999 * 109.47444 * 299.13605 * 14 13 2 32 32 H 1.08996 * 109.47175 * 289.99637 * 15 13 2 33 33 H 1.09003 * 109.47098 * 50.00029 * 15 13 2 34 34 H 1.09000 * 109.50478 * 296.71740 * 18 16 15 35 35 H 1.08996 * 109.50989 * 56.84732 * 18 16 15 36 36 H 1.00898 * 111.00294 * 65.16006 * 19 18 16 37 37 H 1.09010 * 109.50365 * 298.68147 * 20 19 18 38 38 H 1.09001 * 109.54354 * 178.57522 * 20 19 18 39 39 H 1.09002 * 109.50647 * 183.21839 * 21 20 19 40 40 H 1.08996 * 109.51104 * 63.09015 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5439 -0.6379 -1.2987 6 1 4.0768 -0.0551 -0.5621 7 6 4.2393 -1.3054 -2.2845 8 7 5.5518 -1.2329 -2.3273 9 14 3.3174 -2.3139 -3.5581 10 1 3.1634 -3.7076 -3.0692 11 1 1.9764 -1.7180 -3.7853 12 1 4.0797 -2.3180 -4.8326 13 7 2.0196 -0.6925 1.1995 14 6 1.7807 0.1112 2.4057 15 6 1.4106 -2.0234 1.3245 16 6 2.1202 -2.8072 2.4305 17 1 2.0208 -2.2736 3.3758 18 6 1.4897 -4.1964 2.5578 19 7 2.2246 -4.9717 3.5677 20 6 3.6428 -5.0936 3.2005 21 6 4.2518 -3.6954 3.0668 22 8 3.5056 -2.9460 2.1039 23 1 -0.3633 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.6204 -0.2498 -2.1378 27 1 1.7352 -1.7673 -1.2147 28 1 6.0409 -1.7023 -3.0211 29 1 0.7126 0.3028 2.5090 30 1 2.1388 -0.4314 3.2806 31 1 2.3134 1.0585 2.3226 32 1 0.3549 -1.9179 1.5740 33 1 1.5091 -2.5582 0.3798 34 1 0.4479 -4.0968 2.8625 35 1 1.5411 -4.7089 1.5972 36 1 2.1223 -4.5612 4.4837 37 1 3.7287 -5.6205 2.2501 38 1 4.1733 -5.6492 3.9738 39 1 5.2879 -3.7794 2.7390 40 1 4.2145 -3.1883 4.0309 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695840012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:12 Heat of formation + Delta-G solvation = -58.437698 kcal Electronic energy + Delta-G solvation = -18962.808975 eV Core-core repulsion = 16197.742190 eV Total energy + Delta-G solvation = -2765.066785 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.74961 -39.07809 -35.39584 -34.96333 -33.48128 -31.98037 -29.52700 -28.64017 -26.66871 -25.46411 -24.31080 -23.21981 -21.93334 -20.23209 -18.75657 -17.47607 -17.33219 -16.92460 -16.52709 -16.16648 -15.79717 -15.52356 -15.33047 -14.64006 -14.58400 -14.15951 -13.88600 -13.51953 -13.43953 -13.17267 -12.95282 -12.67249 -12.57679 -12.37575 -12.25870 -12.05992 -11.97013 -11.77240 -11.65368 -11.34686 -11.13461 -10.85719 -10.63095 -9.21883 -8.79335 -8.14056 -6.11111 1.35409 1.37002 1.47605 2.43164 2.88794 3.08061 3.21848 3.28713 3.85068 3.95605 4.04818 4.13229 4.17382 4.25603 4.36853 4.40960 4.46309 4.55777 4.58697 4.64750 4.69797 4.79460 4.83776 4.92941 5.00951 5.05311 5.11758 5.15072 5.21215 5.29081 5.54985 5.77251 5.78865 6.33510 6.36817 6.40568 6.56028 6.58284 6.94961 7.47939 9.04230 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.009009 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.607211 B = 3107.370382 C = 3859.109653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.097 3.903 3 H 0.058 0.942 4 C -0.002 4.002 5 C -0.479 4.479 6 H 0.028 0.972 7 C -0.004 4.004 8 N -0.960 5.960 9 Si 0.942 3.058 10 H -0.276 1.276 11 H -0.246 1.246 12 H -0.288 1.288 13 N -0.538 5.538 14 C 0.029 3.971 15 C 0.068 3.932 16 C 0.060 3.940 17 H 0.065 0.935 18 C 0.032 3.968 19 N -0.678 5.678 20 C 0.027 3.973 21 C 0.015 3.985 22 O -0.387 6.387 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.019 0.981 27 H 0.015 0.985 28 H 0.258 0.742 29 H 0.041 0.959 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.351 0.649 37 H 0.064 0.936 38 H 0.110 0.890 39 H 0.087 0.913 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.887 -4.914 13.175 18.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.012 4.012 3 H 0.077 0.923 4 C -0.039 4.039 5 C -0.517 4.517 6 H 0.047 0.953 7 C -0.198 4.198 8 N -0.603 5.603 9 Si 0.767 3.233 10 H -0.201 1.201 11 H -0.169 1.169 12 H -0.214 1.214 13 N -0.261 5.261 14 C -0.119 4.119 15 C -0.060 4.060 16 C 0.000 4.000 17 H 0.082 0.918 18 C -0.099 4.099 19 N -0.307 5.307 20 C -0.103 4.103 21 C -0.063 4.063 22 O -0.306 6.306 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.037 0.963 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.169 0.831 37 H 0.083 0.917 38 H 0.128 0.872 39 H 0.105 0.895 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.344 -5.578 12.608 17.853 hybrid contribution 0.002 0.613 -0.393 0.728 sum -11.341 -4.965 12.215 17.392 Atomic orbital electron populations 1.22411 0.96097 1.02289 1.02587 1.21508 0.92590 0.96879 0.90199 0.92346 1.19611 0.94606 0.95624 0.94090 1.21204 0.91812 1.28223 1.10494 0.95327 1.25914 0.95460 0.98195 1.00259 1.70097 1.08141 1.46193 1.35835 0.85782 0.79782 0.79386 0.78342 1.20130 1.16935 1.21438 1.61827 1.59426 1.02516 1.02355 1.22380 0.99395 0.97635 0.92517 1.22048 0.95548 0.90037 0.98377 1.22955 0.82671 0.96467 0.97897 0.91763 1.22623 0.99156 0.91147 0.96951 1.60912 1.10445 1.53669 1.05717 1.22628 0.88987 0.95787 1.02917 1.23372 0.96807 0.93190 0.92973 1.88401 1.20609 1.73959 1.47598 0.91739 0.92125 0.91374 0.96325 0.96720 0.93290 0.94118 0.91605 0.92758 0.91280 0.92421 0.87286 0.91669 0.83081 0.91717 0.87213 0.89516 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.08 8.44 71.98 0.61 -4.48 16 2 C 0.10 3.80 2.26 44.92 0.10 3.90 16 3 H 0.06 2.44 8.05 -2.39 -0.02 2.42 16 4 C 0.00 -0.09 3.45 29.85 0.10 0.01 16 5 C -0.48 -28.91 9.36 25.60 0.24 -28.67 16 6 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 7 C 0.00 -0.25 5.47 84.65 0.46 0.21 16 8 N -0.96 -63.80 13.96 21.45 0.30 -63.50 16 9 Si 0.94 46.96 27.37 68.60 1.88 48.84 16 10 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 11 H -0.25 -11.20 6.69 99.48 0.67 -10.53 16 12 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 13 N -0.54 -20.45 4.26 -897.02 -3.82 -24.27 16 14 C 0.03 0.85 9.21 127.69 1.18 2.03 16 15 C 0.07 2.25 3.56 86.30 0.31 2.56 16 16 C 0.06 1.78 2.68 30.63 0.08 1.86 16 17 H 0.06 1.69 6.46 -2.39 -0.02 1.68 16 18 C 0.03 0.77 6.05 86.31 0.52 1.29 16 19 N -0.68 -14.75 6.93 -513.01 -3.55 -18.30 16 20 C 0.03 0.63 6.76 86.31 0.58 1.21 16 21 C 0.02 0.43 7.01 72.01 0.50 0.94 16 22 O -0.39 -15.02 10.33 -148.98 -1.54 -16.56 16 23 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 24 H 0.06 1.66 6.54 -2.38 -0.02 1.65 16 25 H 0.07 1.67 6.72 -2.39 -0.02 1.65 16 26 H 0.02 0.88 7.54 -2.39 -0.02 0.86 16 27 H 0.01 0.70 5.41 -2.39 -0.01 0.69 16 28 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 29 H 0.04 0.99 6.64 -2.38 -0.02 0.98 16 30 H 0.07 1.81 6.27 -2.39 -0.01 1.80 16 31 H 0.05 1.69 8.13 -2.39 -0.02 1.67 16 32 H 0.07 1.81 6.82 -2.39 -0.02 1.79 16 33 H 0.06 2.26 6.09 -2.39 -0.01 2.24 16 34 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.35 6.05 8.89 -89.70 -0.80 5.25 16 37 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 38 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -74.50 304.86 -1.87 -76.37 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.17 Total: 16.56 kcal Atomic # 6 Polarization: -23.83 SS G_CDS: 4.69 Total: -19.14 kcal Atomic # 7 Polarization: -99.01 SS G_CDS: -7.07 Total: -106.08 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -1.54 Total: -16.56 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.88 Total: 48.84 kcal Total: -74.50 -1.87 -76.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.933 kcal (2) G-P(sol) polarization free energy of solvation -74.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds