Wall clock time and date at job start Mon Mar 30 2020 04:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47293 * 2 1 4 4 C 1.52997 * 109.47181 * 239.99969 * 2 1 3 5 5 C 1.50696 * 109.47396 * 65.12139 * 4 2 1 6 6 H 1.07998 * 119.99754 * 5.08967 * 5 4 2 7 7 C 1.37873 * 120.00280 * 185.07944 * 5 4 2 8 8 N 1.31515 * 119.99967 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00240 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47063 * 120.00282 * 9 7 5 12 12 H 1.48501 * 109.47424 * 240.00578 * 9 7 5 13 13 N 1.46903 * 109.47208 * 119.99509 * 2 1 3 14 14 C 1.46900 * 111.00144 * 179.72813 * 13 2 1 15 15 C 1.46896 * 111.00299 * 303.68639 * 13 2 1 16 16 C 1.52995 * 109.47245 * 163.28334 * 15 13 2 17 17 H 1.09000 * 109.50424 * 302.76920 * 16 15 13 18 18 C 1.53097 * 109.50730 * 182.64089 * 16 15 13 19 19 N 1.47009 * 109.29507 * 183.23326 * 18 16 15 20 20 C 1.47016 * 110.75046 * 58.55147 * 19 18 16 21 21 C 1.53095 * 109.29241 * 301.44805 * 20 19 18 22 22 O 1.43011 * 109.50924 * 62.85714 * 16 15 13 23 23 H 1.08996 * 109.47164 * 60.00131 * 1 2 3 24 24 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00217 * 1 2 3 26 26 H 1.09002 * 109.47165 * 185.12597 * 4 2 1 27 27 H 1.08998 * 109.47228 * 305.11860 * 4 2 1 28 28 H 0.97001 * 120.00039 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47261 * 189.90261 * 14 13 2 30 30 H 1.09007 * 109.46938 * 309.89615 * 14 13 2 31 31 H 1.08997 * 109.46907 * 69.89322 * 14 13 2 32 32 H 1.09004 * 109.47181 * 43.27495 * 15 13 2 33 33 H 1.09008 * 109.46816 * 283.27831 * 15 13 2 34 34 H 1.09004 * 109.50947 * 303.15339 * 18 16 15 35 35 H 1.09009 * 109.50536 * 63.27765 * 18 16 15 36 36 H 1.00893 * 110.97046 * 294.79777 * 19 18 16 37 37 H 1.09004 * 109.51047 * 181.49020 * 20 19 18 38 38 H 1.09003 * 109.50824 * 61.40459 * 20 19 18 39 39 H 1.08998 * 109.50702 * 176.75596 * 21 20 19 40 40 H 1.08993 * 109.51181 * 296.89394 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6439 0.0585 -2.4764 6 1 1.1570 1.0170 -2.3733 7 6 1.9033 -0.4515 -3.7308 8 7 2.4960 -1.6188 -3.8564 9 14 1.4117 0.5148 -5.2520 10 1 0.7651 1.7873 -4.8425 11 1 2.6206 0.8124 -6.0614 12 1 0.4591 -0.2869 -6.0613 13 7 2.0196 -0.6924 1.1995 14 6 3.4881 -0.7176 1.2302 15 6 1.4780 -0.0790 2.4195 16 6 1.6533 -1.0419 3.5955 17 1 1.1620 -1.9878 3.3677 18 6 1.0303 -0.4311 4.8535 19 7 1.2691 -1.3242 5.9965 20 6 2.7096 -1.5372 6.1990 21 6 3.3158 -2.1370 4.9276 22 8 3.0468 -1.2700 3.8224 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.1261 -0.8014 -1.2045 27 1 1.6037 -1.7190 -1.2962 28 1 2.6781 -1.9778 -4.7389 29 1 3.8235 -1.3815 2.0270 30 1 3.8653 -1.0789 0.2734 31 1 3.8650 0.2887 1.4128 32 1 0.4183 0.1343 2.2793 33 1 2.0111 0.8489 2.6271 34 1 1.4845 0.5401 5.0500 35 1 -0.0427 -0.3084 4.7054 36 1 0.7872 -2.2023 5.8755 37 1 2.8626 -2.2220 7.0332 38 1 3.1913 -0.5842 6.4174 39 1 4.3933 -2.2429 5.0530 40 1 2.8728 -3.1148 4.7392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695840013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:18 Heat of formation + Delta-G solvation = -39.275036 kcal Electronic energy + Delta-G solvation = -18342.472842 eV Core-core repulsion = 15578.237012 eV Total energy + Delta-G solvation = -2764.235830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.78484 -37.40622 -34.57461 -33.34913 -31.97921 -30.40286 -28.21935 -26.82428 -25.01092 -24.05002 -23.31079 -21.72125 -20.88542 -18.88773 -16.73891 -16.56414 -16.28328 -15.66236 -15.06362 -14.93196 -14.44054 -14.37972 -13.90619 -13.26010 -13.11366 -12.72659 -12.28708 -12.02558 -11.79923 -11.48359 -11.39501 -11.35862 -11.29929 -11.17463 -10.86388 -10.61960 -10.38012 -10.26696 -10.07891 -9.77861 -9.21581 -9.03118 -8.36571 -8.29443 -7.59703 -5.97027 -3.98409 3.32142 3.39717 3.43333 3.72753 3.98351 4.35251 4.51649 4.75655 4.90412 5.01865 5.07737 5.18173 5.30937 5.38508 5.46804 5.51418 5.68887 5.74738 5.80292 5.95318 6.02771 6.09589 6.28295 6.35704 6.42613 6.61438 6.74648 6.80495 6.95872 7.03971 7.14251 7.18433 7.61571 7.70630 7.87293 7.93399 8.13428 8.47854 9.08405 9.64466 11.14418 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.054859 B = 0.004607 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.272588 B = 6076.430084 C = 6386.998144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.082 3.918 3 H 0.025 0.975 4 C 0.031 3.969 5 C -0.516 4.516 6 H 0.055 0.945 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.534 5.534 14 C 0.023 3.977 15 C 0.058 3.942 16 C 0.060 3.940 17 H 0.065 0.935 18 C 0.026 3.974 19 N -0.684 5.684 20 C 0.020 3.980 21 C 0.018 3.982 22 O -0.364 6.364 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.032 0.968 26 H 0.017 0.983 27 H 0.027 0.973 28 H 0.259 0.741 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.011 0.989 32 H 0.091 0.909 33 H 0.034 0.966 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.340 0.660 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.255 0.118 18.069 18.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.025 4.025 3 H 0.043 0.957 4 C -0.006 4.006 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.718 3.282 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 N -0.259 5.259 14 C -0.125 4.125 15 C -0.071 4.071 16 C 0.001 3.999 17 H 0.083 0.917 18 C -0.104 4.104 19 N -0.312 5.312 20 C -0.109 4.109 21 C -0.060 4.060 22 O -0.283 6.283 23 H 0.085 0.915 24 H 0.073 0.927 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.030 0.970 32 H 0.109 0.891 33 H 0.052 0.948 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.158 0.842 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.269 0.114 18.285 18.330 hybrid contribution 0.164 0.555 -1.479 1.588 sum -1.105 0.669 16.807 16.856 Atomic orbital electron populations 1.21821 0.95587 1.01549 1.00017 1.21852 0.94746 0.95297 0.90565 0.95740 1.19190 0.96158 0.96155 0.89097 1.21240 1.38649 1.04658 0.90898 0.92704 1.24987 0.95362 0.94979 0.99014 1.69985 1.42415 1.17769 1.23130 0.86578 0.78222 0.80138 0.83310 1.19794 1.21097 1.21037 1.62065 1.08795 1.53784 1.01222 1.22607 0.87321 0.99479 1.03078 1.22189 1.01023 0.94397 0.89531 1.22919 0.82847 0.99304 0.94875 0.91723 1.22679 1.01671 0.97404 0.88675 1.60915 1.09713 1.18749 1.41853 1.22663 0.88722 1.02178 0.97386 1.23237 1.01821 0.93249 0.87735 1.88209 1.23916 1.67778 1.48396 0.91455 0.92679 0.94936 0.96499 0.95454 0.93120 0.90310 0.90770 0.97042 0.89090 0.94813 0.90098 0.89578 0.84234 0.89952 0.90104 0.88692 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 8.73 37.15 0.32 -2.22 16 2 C 0.08 1.77 2.09 -67.72 -0.14 1.63 16 3 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.03 0.82 4.38 -27.89 -0.12 0.70 16 5 C -0.52 -14.54 8.31 -34.44 -0.29 -14.82 16 6 H 0.05 1.51 7.26 -52.49 -0.38 1.12 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.89 -27.02 13.29 55.43 0.74 -26.28 16 9 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.53 -10.15 4.58 -234.89 -1.08 -11.23 16 14 C 0.02 0.43 8.89 60.06 0.53 0.97 16 15 C 0.06 0.88 4.67 -3.83 -0.02 0.86 16 16 C 0.06 0.79 3.04 -26.68 -0.08 0.71 16 17 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 18 C 0.03 0.28 6.04 -3.71 -0.02 0.25 16 19 N -0.68 -6.69 6.93 -113.49 -0.79 -7.48 16 20 C 0.02 0.18 6.76 -3.71 -0.03 0.16 16 21 C 0.02 0.19 7.01 37.21 0.26 0.45 16 22 O -0.36 -5.07 7.33 -35.23 -0.26 -5.33 16 23 H 0.07 1.36 7.07 -51.93 -0.37 1.00 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.03 0.52 6.01 -51.93 -0.31 0.20 16 26 H 0.02 0.47 5.95 -51.93 -0.31 0.16 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.05 16 29 H 0.08 1.40 5.54 -51.93 -0.29 1.11 16 30 H 0.07 1.56 5.73 -51.92 -0.30 1.26 16 31 H 0.01 0.21 7.99 -51.93 -0.41 -0.21 16 32 H 0.09 1.29 5.45 -51.93 -0.28 1.01 16 33 H 0.03 0.53 7.93 -51.92 -0.41 0.12 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 36 H 0.34 2.94 8.89 -39.30 -0.35 2.59 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -30.67 305.90 -8.25 -38.91 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.78 Total: -0.15 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: 0.32 Total: -9.76 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -1.13 Total: -44.99 kcal Atomic # 8 Polarization: -5.07 SS G_CDS: -0.26 Total: -5.33 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.67 -8.25 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.364 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds