Wall clock time and date at job start Mon Mar 30 2020 04:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47293 * 2 1 4 4 C 1.52997 * 109.47181 * 239.99969 * 2 1 3 5 5 C 1.50696 * 109.47396 * 65.12139 * 4 2 1 6 6 H 1.07998 * 119.99754 * 5.08967 * 5 4 2 7 7 C 1.37873 * 120.00280 * 185.07944 * 5 4 2 8 8 N 1.31515 * 119.99967 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 120.00240 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.46951 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47063 * 120.00282 * 9 7 5 12 12 H 1.48501 * 109.47424 * 240.00578 * 9 7 5 13 13 N 1.46903 * 109.47208 * 119.99509 * 2 1 3 14 14 C 1.46900 * 111.00144 * 179.72813 * 13 2 1 15 15 C 1.46896 * 111.00299 * 303.68639 * 13 2 1 16 16 C 1.52995 * 109.47245 * 163.28334 * 15 13 2 17 17 H 1.09000 * 109.50424 * 302.76920 * 16 15 13 18 18 C 1.53097 * 109.50730 * 182.64089 * 16 15 13 19 19 N 1.47009 * 109.29507 * 183.23326 * 18 16 15 20 20 C 1.47016 * 110.75046 * 58.55147 * 19 18 16 21 21 C 1.53095 * 109.29241 * 301.44805 * 20 19 18 22 22 O 1.43011 * 109.50924 * 62.85714 * 16 15 13 23 23 H 1.08996 * 109.47164 * 60.00131 * 1 2 3 24 24 H 1.09002 * 109.47293 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47359 * 300.00217 * 1 2 3 26 26 H 1.09002 * 109.47165 * 185.12597 * 4 2 1 27 27 H 1.08998 * 109.47228 * 305.11860 * 4 2 1 28 28 H 0.97001 * 120.00039 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47261 * 189.90261 * 14 13 2 30 30 H 1.09007 * 109.46938 * 309.89615 * 14 13 2 31 31 H 1.08997 * 109.46907 * 69.89322 * 14 13 2 32 32 H 1.09004 * 109.47181 * 43.27495 * 15 13 2 33 33 H 1.09008 * 109.46816 * 283.27831 * 15 13 2 34 34 H 1.09004 * 109.50947 * 303.15339 * 18 16 15 35 35 H 1.09009 * 109.50536 * 63.27765 * 18 16 15 36 36 H 1.00893 * 110.97046 * 294.79777 * 19 18 16 37 37 H 1.09004 * 109.51047 * 181.49020 * 20 19 18 38 38 H 1.09003 * 109.50824 * 61.40459 * 20 19 18 39 39 H 1.08998 * 109.50702 * 176.75596 * 21 20 19 40 40 H 1.08993 * 109.51181 * 296.89394 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.6439 0.0585 -2.4764 6 1 1.1570 1.0170 -2.3733 7 6 1.9033 -0.4515 -3.7308 8 7 2.4960 -1.6188 -3.8564 9 14 1.4117 0.5148 -5.2520 10 1 0.7651 1.7873 -4.8425 11 1 2.6206 0.8124 -6.0614 12 1 0.4591 -0.2869 -6.0613 13 7 2.0196 -0.6924 1.1995 14 6 3.4881 -0.7176 1.2302 15 6 1.4780 -0.0790 2.4195 16 6 1.6533 -1.0419 3.5955 17 1 1.1620 -1.9878 3.3677 18 6 1.0303 -0.4311 4.8535 19 7 1.2691 -1.3242 5.9965 20 6 2.7096 -1.5372 6.1990 21 6 3.3158 -2.1370 4.9276 22 8 3.0468 -1.2700 3.8224 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 3.1261 -0.8014 -1.2045 27 1 1.6037 -1.7190 -1.2962 28 1 2.6781 -1.9778 -4.7389 29 1 3.8235 -1.3815 2.0270 30 1 3.8653 -1.0789 0.2734 31 1 3.8650 0.2887 1.4128 32 1 0.4183 0.1343 2.2793 33 1 2.0111 0.8489 2.6271 34 1 1.4845 0.5401 5.0500 35 1 -0.0427 -0.3084 4.7054 36 1 0.7872 -2.2023 5.8755 37 1 2.8626 -2.2220 7.0332 38 1 3.1913 -0.5842 6.4174 39 1 4.3933 -2.2429 5.0530 40 1 2.8728 -3.1148 4.7392 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695840013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:16 Heat of formation + Delta-G solvation = -62.354786 kcal Electronic energy + Delta-G solvation = -18343.473655 eV Core-core repulsion = 15578.237012 eV Total energy + Delta-G solvation = -2765.236643 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -40.77590 -38.91205 -35.53495 -35.18850 -33.44080 -31.90885 -29.70497 -28.33365 -26.18925 -25.64358 -24.78553 -22.94093 -21.89430 -20.61000 -18.69656 -17.48999 -17.41931 -16.75316 -16.61905 -16.19296 -15.83442 -15.76731 -15.33417 -14.69791 -14.45939 -14.08339 -13.71526 -13.52907 -13.17973 -13.11271 -13.02119 -12.71308 -12.46863 -12.44336 -12.25956 -12.20193 -12.01114 -11.72803 -11.65964 -11.17724 -11.08327 -10.98913 -10.51109 -9.27475 -9.08773 -8.17895 -6.27692 1.40263 1.40361 1.53540 2.40967 2.78706 3.03418 3.15614 3.26147 3.86760 3.99247 4.08977 4.13361 4.27076 4.28387 4.35411 4.42718 4.47635 4.56144 4.65386 4.71054 4.75338 4.85418 4.91365 4.97160 5.06461 5.13232 5.23534 5.27374 5.42950 5.52749 5.72592 5.79421 5.84206 6.12210 6.24515 6.33492 6.36675 6.41425 6.88712 7.40440 8.94630 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.054859 B = 0.004607 C = 0.004383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.272588 B = 6076.430084 C = 6386.998144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.091 3.909 3 H 0.017 0.983 4 C 0.040 3.960 5 C -0.531 4.531 6 H 0.061 0.939 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.963 3.037 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.543 5.543 14 C 0.033 3.967 15 C 0.058 3.942 16 C 0.066 3.934 17 H 0.057 0.943 18 C 0.035 3.965 19 N -0.685 5.685 20 C 0.026 3.974 21 C 0.014 3.986 22 O -0.391 6.391 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.071 0.929 26 H -0.010 1.010 27 H -0.007 1.007 28 H 0.262 0.738 29 H 0.092 0.908 30 H 0.043 0.957 31 H 0.012 0.988 32 H 0.106 0.894 33 H 0.033 0.967 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.348 0.652 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.106 0.894 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.379 1.050 19.354 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.017 4.017 3 H 0.035 0.965 4 C 0.002 3.998 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.788 3.212 10 H -0.184 1.184 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.268 5.268 14 C -0.115 4.115 15 C -0.070 4.070 16 C 0.006 3.994 17 H 0.075 0.925 18 C -0.095 4.095 19 N -0.314 5.314 20 C -0.104 4.104 21 C -0.063 4.063 22 O -0.311 6.311 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.090 0.910 26 H 0.008 0.992 27 H 0.011 0.989 28 H 0.071 0.929 29 H 0.110 0.890 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.124 0.876 33 H 0.051 0.949 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.166 0.834 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.124 0.876 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.400 1.046 19.600 19.774 hybrid contribution 0.574 0.208 -1.804 1.905 sum -1.826 1.255 17.795 17.933 Atomic orbital electron populations 1.21724 0.93538 1.01546 1.01339 1.21588 0.96294 0.94043 0.89749 0.96522 1.19018 0.94331 0.94835 0.91585 1.21611 1.38497 1.05009 0.91850 0.92078 1.25936 0.95190 0.95962 1.02620 1.70127 1.43609 1.19591 1.24106 0.85425 0.77988 0.78959 0.78834 1.18440 1.20647 1.20376 1.62024 1.08692 1.54134 1.01908 1.22480 0.87591 0.99655 1.01746 1.22306 1.01489 0.94798 0.88415 1.22832 0.82910 0.98505 0.95133 0.92493 1.22586 1.02256 0.97096 0.87563 1.60934 1.10207 1.19217 1.41002 1.22663 0.88108 1.02354 0.97278 1.23426 1.02750 0.92826 0.87348 1.88126 1.24300 1.68613 1.50064 0.92686 0.93309 0.91027 0.99168 0.98876 0.92913 0.88990 0.93861 0.96906 0.87627 0.94868 0.90506 0.88051 0.83354 0.87699 0.90628 0.87625 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.64 8.73 71.98 0.63 -4.01 16 2 C 0.09 3.93 2.09 44.91 0.09 4.03 16 3 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 4 C 0.04 2.16 4.38 29.85 0.13 2.29 16 5 C -0.53 -30.46 8.31 25.60 0.21 -30.25 16 6 H 0.06 3.35 7.26 -2.91 -0.02 3.33 16 7 C 0.00 0.02 5.46 84.65 0.46 0.49 16 8 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 9 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 10 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.54 -20.64 4.58 -897.05 -4.11 -24.75 16 14 C 0.03 1.28 8.89 127.69 1.13 2.42 16 15 C 0.06 1.69 4.67 86.30 0.40 2.09 16 16 C 0.07 1.62 3.04 30.63 0.09 1.71 16 17 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 18 C 0.04 0.67 6.04 86.31 0.52 1.19 16 19 N -0.68 -11.58 6.93 -512.98 -3.56 -15.14 16 20 C 0.03 0.40 6.76 86.31 0.58 0.98 16 21 C 0.01 0.27 7.01 72.01 0.50 0.78 16 22 O -0.39 -10.41 7.33 -148.98 -1.09 -11.51 16 23 H 0.05 2.18 7.07 -2.39 -0.02 2.16 16 24 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.07 2.10 6.01 -2.39 -0.01 2.08 16 26 H -0.01 -0.58 5.95 -2.39 -0.01 -0.60 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 29 H 0.09 3.29 5.54 -2.39 -0.01 3.28 16 30 H 0.04 1.91 5.73 -2.38 -0.01 1.90 16 31 H 0.01 0.47 7.99 -2.39 -0.02 0.45 16 32 H 0.11 2.71 5.45 -2.38 -0.01 2.70 16 33 H 0.03 0.98 7.93 -2.38 -0.02 0.96 16 34 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 35 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.35 5.07 8.89 -89.70 -0.80 4.28 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -66.95 305.90 -1.46 -68.41 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.21 Total: 12.12 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: 4.77 Total: -18.28 kcal Atomic # 7 Polarization: -90.10 SS G_CDS: -7.38 Total: -97.48 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -1.09 Total: -11.51 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -66.95 -1.46 -68.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.055 kcal (2) G-P(sol) polarization free energy of solvation -66.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds