Wall clock time and date at job start Mon Mar 30 2020 04:55:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47088 * 2 1 4 4 C 1.53003 * 109.47091 * 119.99418 * 2 1 3 5 5 C 1.50697 * 109.47480 * 182.93050 * 4 2 1 6 6 H 1.08000 * 119.99668 * 355.12781 * 5 4 2 7 7 C 1.37871 * 120.00392 * 175.13078 * 5 4 2 8 8 N 1.31514 * 119.99888 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 120.00163 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47000 * 90.00155 * 9 7 5 11 11 H 1.48500 * 109.46993 * 209.99923 * 9 7 5 12 12 H 1.48498 * 109.46874 * 329.99704 * 9 7 5 13 13 N 1.46893 * 109.47264 * 239.99662 * 2 1 3 14 14 C 1.46894 * 111.00143 * 72.78314 * 13 2 1 15 15 C 1.46901 * 111.00198 * 308.82524 * 13 2 1 16 16 C 1.52995 * 109.47483 * 189.99904 * 15 13 2 17 17 H 1.09005 * 109.50760 * 304.91760 * 16 15 13 18 18 C 1.53097 * 109.50649 * 184.78682 * 16 15 13 19 19 N 1.47022 * 109.29037 * 183.23993 * 18 16 15 20 20 C 1.47011 * 110.75174 * 58.55166 * 19 18 16 21 21 C 1.53100 * 109.29297 * 301.44815 * 20 19 18 22 22 O 1.43014 * 109.25822 * 56.82769 * 21 20 19 23 23 H 1.09004 * 109.47518 * 300.00490 * 1 2 3 24 24 H 1.08993 * 109.46977 * 60.00165 * 1 2 3 25 25 H 1.09006 * 109.46953 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47395 * 302.93046 * 4 2 1 27 27 H 1.09008 * 109.46913 * 62.92825 * 4 2 1 28 28 H 0.97004 * 120.00166 * 180.02562 * 8 7 5 29 29 H 1.08994 * 109.47543 * 289.88886 * 14 13 2 30 30 H 1.09003 * 109.46979 * 49.88494 * 14 13 2 31 31 H 1.09001 * 109.47620 * 169.88415 * 14 13 2 32 32 H 1.09008 * 109.46561 * 69.99943 * 15 13 2 33 33 H 1.08991 * 109.47407 * 310.00500 * 15 13 2 34 34 H 1.08995 * 109.50562 * 303.14907 * 18 16 15 35 35 H 1.09000 * 109.50966 * 63.28593 * 18 16 15 36 36 H 1.00894 * 110.96576 * 294.79956 * 19 18 16 37 37 H 1.08998 * 109.50898 * 181.49669 * 20 19 18 38 38 H 1.08999 * 109.50861 * 61.40156 * 20 19 18 39 39 H 1.08995 * 109.50848 * 176.76362 * 21 20 19 40 40 H 1.09001 * 109.50580 * 296.89642 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5452 -0.6586 1.2863 6 1 4.0880 -0.2246 0.4596 7 6 4.2294 -1.1554 2.3753 8 7 3.5684 -1.6843 3.3817 9 14 6.0953 -1.0785 2.4207 10 1 6.5230 0.1980 3.0477 11 1 6.6185 -2.2194 3.2142 12 1 6.6275 -1.1529 1.0364 13 7 2.0197 -0.6925 -1.1993 14 6 1.8125 0.1260 -2.4014 15 6 1.3846 -2.0093 -1.3431 16 6 2.0910 -2.7985 -2.4472 17 1 2.0919 -2.2152 -3.3680 18 6 1.3566 -4.1215 -2.6798 19 7 2.0831 -4.9100 -3.6858 20 6 3.4626 -5.1684 -3.2484 21 6 4.1759 -3.8348 -3.0100 22 8 3.4386 -3.0700 -2.0525 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.6344 -0.2385 2.1386 27 1 1.7201 -1.7629 1.2235 28 1 4.0497 -2.0335 4.1481 29 1 0.7473 0.1782 -2.6262 30 1 2.1967 1.1311 -2.2272 31 1 2.3398 -0.3238 -3.2426 32 1 0.3343 -1.8795 -1.6045 33 1 1.4601 -2.5539 -0.4020 34 1 1.3089 -4.6805 -1.7453 35 1 0.3464 -3.9194 -3.0358 36 1 2.0686 -4.4504 -4.5839 37 1 3.9897 -5.7303 -4.0194 38 1 3.4492 -5.7444 -2.3231 39 1 5.1804 -4.0220 -2.6306 40 1 4.2373 -3.2823 -3.9476 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695840015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:22 Heat of formation + Delta-G solvation = -62.423760 kcal Electronic energy + Delta-G solvation = -18871.889055 eV Core-core repulsion = 16106.649421 eV Total energy + Delta-G solvation = -2765.239634 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.73576 -39.03991 -35.39655 -35.03130 -33.38382 -31.78154 -29.15469 -28.63155 -26.62516 -25.49799 -24.58322 -23.29560 -21.92671 -20.25332 -18.33475 -17.47700 -17.31979 -16.86720 -16.56053 -16.26024 -15.81041 -15.48100 -15.27274 -14.69030 -14.43663 -13.98784 -13.66100 -13.49952 -13.31967 -13.10683 -12.98306 -12.66147 -12.51676 -12.42004 -12.33973 -12.20155 -12.05541 -11.93551 -11.69707 -11.09447 -11.07529 -10.84324 -10.45128 -9.21336 -8.82916 -8.07612 -6.10383 1.38875 1.40970 1.52898 2.48794 2.89177 3.08932 3.24487 3.29943 3.86475 3.98534 4.06216 4.17177 4.20084 4.28272 4.37817 4.42747 4.48847 4.55998 4.60494 4.65664 4.73711 4.80450 4.86467 4.95208 5.02932 5.06327 5.15810 5.22180 5.26142 5.50885 5.73196 5.78874 5.92180 6.31830 6.37373 6.38499 6.55137 6.58766 7.02719 7.54505 9.04658 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018172 B = 0.008690 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.438586 B = 3221.178230 C = 4157.211901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.093 3.907 3 H 0.063 0.937 4 C 0.038 3.962 5 C -0.489 4.489 6 H 0.054 0.946 7 C -0.007 4.007 8 N -0.942 5.942 9 Si 0.954 3.046 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.534 5.534 14 C 0.028 3.972 15 C 0.071 3.929 16 C 0.064 3.936 17 H 0.067 0.933 18 C 0.032 3.968 19 N -0.679 5.679 20 C 0.025 3.975 21 C 0.015 3.985 22 O -0.389 6.389 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.052 0.948 26 H -0.007 1.007 27 H -0.010 1.010 28 H 0.257 0.743 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.106 0.894 36 H 0.351 0.649 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.578 -2.644 -16.741 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.015 4.015 3 H 0.081 0.919 4 C 0.001 3.999 5 C -0.527 4.527 6 H 0.072 0.928 7 C -0.202 4.202 8 N -0.585 5.585 9 Si 0.780 3.220 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.257 5.257 14 C -0.120 4.120 15 C -0.057 4.057 16 C 0.005 3.995 17 H 0.084 0.916 18 C -0.099 4.099 19 N -0.308 5.308 20 C -0.105 4.105 21 C -0.064 4.064 22 O -0.308 6.308 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.011 0.989 27 H 0.008 0.992 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.111 0.889 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.203 -3.352 -16.146 17.017 hybrid contribution 0.574 0.845 0.325 1.073 sum -3.628 -2.506 -15.820 16.423 Atomic orbital electron populations 1.22387 0.96876 1.01745 1.02124 1.21651 0.92262 0.96966 0.90649 0.91890 1.19028 0.95208 0.93957 0.91706 1.21441 0.93110 1.36394 1.01799 0.92796 1.25819 1.02693 0.95934 0.95784 1.70092 1.36797 1.43054 1.08530 0.85610 0.81067 0.77486 0.77819 1.19943 1.21261 1.19657 1.61861 1.58700 1.02743 1.02433 1.22410 0.99451 0.97639 0.92532 1.21998 0.95193 0.90343 0.98212 1.22880 0.83354 0.95958 0.97321 0.91571 1.22608 0.98546 0.91934 0.96808 1.60924 1.14348 1.49886 1.05645 1.22651 0.89026 0.96330 1.02457 1.23400 0.96646 0.93047 0.93270 1.88350 1.24281 1.73313 1.44838 0.92548 0.91240 0.92852 0.98871 0.99173 0.93443 0.94477 0.92003 0.91610 0.91811 0.93050 0.91795 0.87593 0.83091 0.87162 0.91637 0.88947 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.69 8.41 71.98 0.61 -5.09 16 2 C 0.09 3.86 2.27 44.92 0.10 3.97 16 3 H 0.06 2.66 7.87 -2.39 -0.02 2.64 16 4 C 0.04 2.06 4.40 29.85 0.13 2.19 16 5 C -0.49 -29.10 8.80 25.60 0.23 -28.87 16 6 H 0.05 3.23 7.69 -2.91 -0.02 3.20 16 7 C -0.01 -0.42 5.46 84.65 0.46 0.04 16 8 N -0.94 -59.88 13.29 21.44 0.28 -59.60 16 9 Si 0.95 47.75 29.54 68.60 2.03 49.78 16 10 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 12 H -0.27 -13.39 7.11 99.48 0.71 -12.68 16 13 N -0.53 -20.39 4.25 -897.09 -3.82 -24.21 16 14 C 0.03 0.80 8.88 127.69 1.13 1.93 16 15 C 0.07 2.46 3.48 86.30 0.30 2.76 16 16 C 0.06 1.93 2.75 30.63 0.08 2.01 16 17 H 0.07 1.74 6.47 -2.38 -0.02 1.72 16 18 C 0.03 0.78 6.05 86.31 0.52 1.30 16 19 N -0.68 -14.58 6.93 -512.98 -3.56 -18.14 16 20 C 0.03 0.56 6.76 86.32 0.58 1.15 16 21 C 0.01 0.39 7.01 72.02 0.50 0.90 16 22 O -0.39 -14.49 10.42 -148.98 -1.55 -16.04 16 23 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.07 1.88 7.02 -2.39 -0.02 1.86 16 25 H 0.05 1.74 6.54 -2.38 -0.02 1.72 16 26 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 27 H -0.01 -0.58 6.36 -2.38 -0.02 -0.60 16 28 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.04 0.90 7.09 -2.39 -0.02 0.89 16 30 H 0.06 1.78 7.89 -2.39 -0.02 1.77 16 31 H 0.07 1.76 6.67 -2.39 -0.02 1.74 16 32 H 0.06 1.84 6.77 -2.38 -0.02 1.82 16 33 H 0.05 2.22 6.18 -2.39 -0.01 2.21 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.35 5.94 8.89 -89.70 -0.80 5.15 16 37 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -71.19 308.90 -1.75 -72.94 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.21 Total: 12.98 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 4.65 Total: -17.71 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -7.09 Total: -101.94 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.55 Total: -16.04 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.03 Total: 49.78 kcal Total: -71.19 -1.75 -72.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695840015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.514 kcal (2) G-P(sol) polarization free energy of solvation -71.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds